LOC110493441 (sox10)


Basic Information

Item Value
gene id LOC110493441
gene name sox10
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 21411626 ~ 21417430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567709.2
aaggaatgtagtaaaagtaaaagttgtaaaaaaaaatagaaatagtacagtacagataccccaaaaaacgtattaagtagtactttaaattatttttagGCCATAGACCTAATTCTTTCATTATTAATTTCCTGGGGTTAACGATGACCTAGATATAAGTAACATAGTCACTCATCAAATAGGGCCCACCAACTGTATAATGACGTTATAATGAATATAACGACGTTATGTATTTGAATCCCTTGGAGATTTTTCGTGAAATTTAGTGTACTTTGACCACAAATGTATTATCATGATTGTTTATTTATTCAATATAACATGTCAACACATCAAACAAAGCGGGCCTTATTTGGTTCCTAAATAGAGCCAGTGTAAAGTCACTTAAGCCACTCTGATGTAAAATCTCACCTCCTTTCATTGGAAATATTAGTGGTGACGGACGGACAGGCAATAACAGTAACCCCGTCGTCCAGTAAGAAAGCCGGAGAATATTAAATGACCAATAGGCGTCCGGCGTGTGCGCAAGAGGGTGGCGTCGACTCAGTGTTGGAATGCTGCCTCTCAGAATGTTTTCCACTTTCAATCACTTTTTTTCTCTCGTTCCTTCTCACAACGGCGCTCTTTAAGCTCCGGTGCGCGATACAGAGCGGCCATTCATTGAAGGGCAAACCAAACGAGGGGGCAGGGGACAGGGCGAGCGTCACACTGTTGGACAGGGGAACGCACGAACTCCCGTGTTGAACGGGCGACCTCCTAAACTCTGCATTGGCGACATCGGTGGAAGTGAATGGGAAGTGCAAAAGACAGGATTTGGGTACATTCGATTACGCACGAGTAGGCTATGGGTTTACGCGTGGCATATAGGAATAATTCCACATAAAGGAGCGAGTCCGGAGCACATCTCTCAGCTGTAGCTTAAAGTTTTGCATTCTCTGAACAAATTTAACAAATTTTCCTGCAaggatatttttttttgttgccaatcGATAATAGCCTATACATTAAAATGTCTGGAGAGGAGCACAGTCTATCCGAGGCAGAGTTGAGTCCCGGGGGCTCAGATGATGGTCACTCTCTGTCACCGGCACACTCCGGGGCCACCGGCGGCCGGGACTCCCCGCTCATCGGTCCGTCGCAGCAACTGACGGGGCTTTCTGGCGCAGATGGCGGCGGAGAGGACGGTGGACTAGTACCCAAGTCAGAGGTGGATATGGACCGGTTCCCCATCGGCATCCGCGAGGCGGTCAGCCAGGTGCTGGACGGATACGACTGGACGCTCGTGCCCATGCCCGTGCGCGTAAACAACGGGAACAAGAGCAAGCCGCACGTGAAGAGGCCGATGAACGCCTTCATGGTGTGGGCGCAGGCCGCGCGCCGTAAACTGGCGGACCAGTACCCTCACCTGCACAACGCGGAGCTCAGCAAGACACTCGGCAAACTGTGGAGGCTCCTGAATGAGAGTGACAAGAGGCCTTTCATTGAGGAGGCGGAGCGACTGCGGAAACAACATAAGAAGGACTACCCAGAGTACAAGTACCAGCCCCGCAGACGCAAGAACGGCAAGCTGGGGACCAAtggtgagggaggggagggagcagagggggatgGCAGCCACGCCCAGTCCCATTACAAGGCCCTCCACCTGGATGTGCACAGTACAGGGGCTGGGTCCCCCCTGGCCGacctccaccaccatcatcaccaccaccctgCAGGTCAGGGTCACAGCCCGCCAACACCCCCCACCACCCCAAAGACAGAGCTCCAGTCTGGAAAGATGacggaggggaagagggagggcgGAGGTGGCTCAGGATCCTCCCGTGGAGGAGGCCTGGGGGTTGGAGCAGAGGGGGCCTCCGGGGGCCATTCATCAGCGGGCGGGAAAccccacatcgacttctgcaccaTGGACATCGGCGAGATCAGCCACGACGTGATGGCCAACATCGAGCCCTTCGACGTCAACGAGTTTGACCAGTACTTGCCGCCCAACGGGCACCCAGGGGTTGGCCAGGGCGGCGCCGCCACATCAAGCTCCTCCGCTACATCCTACGCCTACGCCCTCGCTGCTGCCAGCGGCCACTCAGCCGCCTGGCTCTCCAAGCAGCATCAGCATCAACAGCCCTCCCCCTCAGCCTCAGACGCCACCAAGGCCCAGATCAAGAGTGAGTCCGGGGCCGGGAGCCACTACGcagagtcttcctcctcttcgtcaGGAACCCACGTCACCTACACCCCCCTCAGCCTCCCCCACTACGGATCAGCCTTCCCCTCGCTGCCCTCCAGGGCCCAGTTTGAGTACGGGGAGCACCAGGCTCCGGGGCCGTACTACGCCCACTCCAGCCAGGCCCCGGGGCTGTACTCAGCCTTCTCCTACAtggggcccagccagaggcccctTTACACTACCATCACTGACCCCTCCAGCGTGGCCCAGTCTCACAGTCCTACACATTGGGAGCAGCCAGTCTACACCACCCTGTCACGGCCATGAGAGACTGAGATGCATGGGatcggatgtgtgtgtgtgtgtgcgtctctacACCACCTTCTCACGACCCTGAGAAAGGGATAAAGAAAGACAAAGATTGGAAGGGTGTAGGGTGGctactgaatgtgtgtgtggcgGGTTAACAAAGGATGGATATCTTACTGATGTTGTATTGGGATTCATTGGGACTTGACAGTGTATCTCTACCCATGGAGTCCTTATAATattttactgtacagtatattttcTATCACAGCCAATGGTCAATAGCCAATCAGAATAAACCTTTAACCAATGTGTGCCATGTTTTAGTGTGTAAGGTCAGGATCCCAGCTGCCAGAGTGTCATAGTGTATAGTAAGAGGGCTTATTGTGATGATGAGCCCAGAGCACACATAACTAATACCGTAGTGGTAAGAAGGATACACACAGGGTTTCAAAATGCTGCTAACTtccccaaaattcccaggttttccagaaatcctatTTGGAAGTTCCTGGAattaggagggaataagcaggataTCCAGGAATCCTCTtactgggatttctggaaaactggggaatttggggaaagttaatGGAATTTTTCCAACCCTAGCTACCTATATAACAAGGTTTGAGTAACATTGCCGGCAAGGACTGGCTTTCAGCGGGTTTCGACAGGCTATCAGCCTAGGAAAAATACAACATGATGTTTATCAGAACTGGGTTGTTTTAGATTGAAATAATCCGAGTCTATTAACCAAACTAAAGGAAATGTTTGTGTGACTTAATTTTAGTAATTTTTTTTATGACTTAAGTGATGTATTTTGTGGTTATTTTTTATATGACTTTACACTCTGGTTCGATATTACACTGACATATCTCCACCACTGCTTTTGAAAGAAAGGTCAGTTTACCGGGTCAAAAACGTTATGCGTTGGTCTacgggcgtcaggtagcctagccgTTAAGTGCAttaggccagtaactgaaagctTGCCGGTTCGAAACCCTGAGCCGGCGTGGTGGAAAAATATTatattctgcccttgagcaaggcagttaacctgcaACAACTACTCCCCGGGCGCCATGGAcctcgattaaggcagcccccactGCACATCTCTGATTCAAAGGGTTTCTGTTAGATGTGGAAGACACGGTTGAATGCGTTcaagttgtgcaactgactaggtatcacctTCTGGGATGCTGCTTGACTCCTTATGTGTTGCGTTGTGCAAAACCAGAGTTGACGAGGAAAAAGGACAAAaaaaaggagggaaagagaattcCTGGAAACACTTTAGCATAGAGTTCTGGAAAGCAGCACATTACCTCAACTCAATGTACATGTGCCAATAACACTCTACTCTAATATCTTCGATGAGAATATATGGCACACATTTCGCTTATACTACTcataaataataaaacaattgTTGAAGtcactggatttttttttttattgatatgGATTGCATTTGTACGCTCTGGTTGCTTCTAATTCCATTTGTCTACCAAATTATCAAAGcaaaacaatctacatgactCAGCAAGTACAAAGTCGGTAAAATCCTTTTGTGAAGAATTCTCCAGCTTTAAACTAAAGATTTACTCTTAGTGAGAATTAGTGAGCTGTTTAGAACAAATGCCACATGCTATAGTTTACGTACAAAGGTTTCCCCTCTGCATCTCCCTTTTCTGTATCCTGTTTAATGTCCCTCTCGGCTCCCTCTGCAATGTGAATGATCACCACATGCCTCTTCTTCCATAGGTGATTTAGACGGGAGTCATTTTATACTGACCACCTCTGCTATGAAGTTTTTATCAAAAATAATTTCACGTTtagctttttttctctctccattttgTACATTCCTGGATAGTTTCTAAAACTTTGTATCCTACACATTTGATGTATCTGCTTTCTTCTACAAGAAACAACAATGTACAAATATTATTGATGTTGTCATTACGTCGTCATTCTATTAAAGCAATTTATTTATACAAAA

Function

symbol description
sox10 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in olfactory bulb development. Acts upstream of or within with a positive effect on iridophore differentiation; melanocyte differentiation; and xanthophore differentiation. Acts upstream of or within several processes, including nervous system development; neural crest cell migration; and sensory organ development. Predicted to be active in nucleus. Is expressed in several structures, including glioblast; head; iridoblast; nervous system; and neural crest. Used to study Hirschsprung's disease and Waardenburg's syndrome. Human ortholog(s) of this gene implicated in Kallmann syndrome; PCWH syndrome; Waardenburg syndrome type 2E; and Waardenburg syndrome type 4C. Orthologous to human SOX10 (SRY-box transcription factor 10).

NR:

description
transcription factor SOX-10-like

GO: NA

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567709.2 True 4496 mRNA 0.48 4 21411626 21417430
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493443 NA coding downstream 2379 21407072 ~ 21409247 (-)
LOC110493446 LOC106589449 coding downstream 25978 21377786 ~ 21385648 (-)
ntan1 ntan1 coding downstream 44248 21364150 ~ 21367378 (-)
LOC110493447 LOC106564561 coding downstream 51343 21353194 ~ 21360283 (-)
LOC110495100 LOC106589459 coding downstream 58955 21335261 ~ 21352671 (-)
LOC110493440 LOC106564549 coding upstream 11918 21429348 ~ 21439487 (-)
LOC110493454 NA coding upstream 45570 21463000 ~ 21465098 (-)
mb mb coding upstream 73804 21491234 ~ 21494421 (-)
LOC110493463 LOC106588978 coding upstream 368736 21786166 ~ 21790195 (-)
trnaa-ugc-129 NA coding upstream 413460 21830890 ~ 21830965 (-)
G1427871 NA non-coding downstream 11576 21399687 ~ 21400050 (-)
G1427872 LOC106589436 non-coding downstream 12399 21398487 ~ 21399227 (-)
G1427809 NA non-coding downstream 50571 21360552 ~ 21361055 (-)
G1427860 NA non-coding downstream 61634 21349720 ~ 21349992 (-)
G1427858 NA non-coding downstream 79158 21327500 ~ 21332468 (-)
G1427879 NA non-coding upstream 5235 21422665 ~ 21423590 (-)
G1427880 NA non-coding upstream 6182 21423612 ~ 21424091 (-)
G1427883 NA non-coding upstream 10941 21428371 ~ 21429168 (-)
G1427889 NA non-coding upstream 27113 21444543 ~ 21444831 (-)
G1427894 NA non-coding upstream 33544 21450974 ~ 21451202 (-)
G1427703 NA other downstream 400306 21007541 ~ 21032030 (-)
LOC110511666 LOC106589939 other downstream 624041 20785995 ~ 20787989 (-)
G1427608 NA other downstream 637251 20772526 ~ 20774375 (-)
G1427470 NA other downstream 854734 20553196 ~ 20556892 (-)
G1428161 LOC106564449 other upstream 209247 21626677 ~ 21627280 (-)
G1428291 LOC106588995 other upstream 386901 21804331 ~ 21804660 (-)
G1428740 NA other upstream 921949 22339379 ~ 22340563 (-)
G1429642 NA other upstream 1836892 23254322 ~ 23254592 (-)
G1429643 NA other upstream 1837463 23254893 ~ 23255180 (-)

Expression

LOC110493441(sox10) Expression in all Baseline Samples

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LOC110493441(sox10) Expression in each Bioproject

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LOC110493441(sox10) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network