XLOC_033222


Basic Information

Item Value
gene id XLOC_033222
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54747948 ~ 54754115 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065248
CTTGCTTGCATGCTAATAATGCTGTGGTTTTGAAAAGTTGTGCAGTTCATAGTAAAGTGTGACACAAACTAGTGCTGTTAAAACCTTTATTGAAACTTGTAACTGTAATGAAACATGACAAATTGATACACACCCTTAACGCAACAACCACAATGTTTGTAAAGTTGTACAGACGTCAACGAGCAATGGAAACTTCTTAGAATGAAttactggctgactgactgagaGATGCTGTATGTGATATCATATTTATATGGTCAGATAAACATATCACTTGctatataaaacattatatatatcaTGTTAAACTTGCACAAACAGCCCGTAACACTCGTACAAATCATTTTTACAATGATCCTAAATCCTTTCAGAACATAATAAACACAATTCCATATTCACTAACAACTGAATGAAAATACATTGTTGAGAAACAGAAACTAATgtatgcagtgtttgtgtttctcAACATAAAGCATCTACCGCCCCGAGAGAAATAAAAGCTCATTCTTACCATTACTTCTGCAAGACTTAACCAAAATTAATAAGCAATGCAATTTagatgcattttttaaagtgcttCTCAGTCAATAACCAGATGAGATTTGAAAGCTGCTGACGTCACTTCATTCACAAAGGACTTCTTTTTCATGCCATTCTTTCTTGGAAAGACCAGAGTTCAGGAAACCCACCAGCTGCGGCAGAGAC
>TCONS_00065249
ATCATATTTATATGGTCAGATAAACATATCACTTGctatataaaacattatatatatcaTGTTAAACTTGCACAAACAGCCCGTAACACTCGTACAAATCATTTTTACAATGATCCTAAATCCTTTCAGAACATAATAAACACAATTCCATATTCACTAACAACTGAATGAAAATACATTGTTGAGAAACAGAAACTAATgtatgcagtgtttgtgtttctcAACATAAAGCATCTACCGCCCCGAGAGAAATAAAAGCTCATTCTTACCATTACTTCTGCAAGACTTAACCAAAATTAATAAGCAATGCAATTTagatgcattttttaaagtgcttCTCAGTCAATAACCAGATGAGATTTGAAAGCTGCTGACGTCACTTCATTCACAAAGGACTTCTTTTTCATGCCATTCTTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065248 False 705 lncRNA 0.35 2 54747948 54754115
TCONS_00065249 True 418 lncRNA 0.32 2 54750932 54753873

Neighbor

gene id symbol gene type direction distance location
XLOC_033220 NA coding downstream 224497 54497804 ~ 54523451 (-)
XLOC_033221 dre-let-7a-6 coding downstream 241362 54506458 ~ 54506586 (-)
XLOC_033219 CR847944.1 coding downstream 261538 54481941 ~ 54486410 (-)
XLOC_033218 CR847944.2 coding downstream 282571 54459413 ~ 54465377 (-)
XLOC_033217 sys1 coding downstream 303019 54438355 ~ 54444929 (-)
XLOC_033223 tnnt2b coding upstream 7026 54761141 ~ 54796072 (-)
XLOC_033224 tnni1b coding upstream 51021 54805136 ~ 54826061 (-)
XLOC_033225 CU861466.1 coding upstream 60806 54814921 ~ 54815037 (-)
XLOC_033226 csrp1b coding upstream 84154 54838269 ~ 54845622 (-)
XLOC_033227 NA coding upstream 122062 54876177 ~ 54886711 (-)
XLOC_033212 NA non-coding downstream 573875 54164932 ~ 54174073 (-)
XLOC_033203 NA non-coding downstream 1489880 53252557 ~ 53258068 (-)
XLOC_033199 BX649282.4 non-coding downstream 1714837 53032996 ~ 53033111 (-)
XLOC_033228 NA non-coding upstream 268721 55022836 ~ 55028913 (-)
XLOC_033230 NA non-coding upstream 519891 55274006 ~ 55278163 (-)
XLOC_033236 CR847793.2 non-coding upstream 793020 55547135 ~ 55547270 (-)

Expression


Co-expression Network