LOC110493440 (LOC106564549)


Basic Information

Item Value
gene id LOC110493440
gene name LOC106564549
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 21429348 ~ 21439487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567707.2
TGAGTCAAGTGCGAGTCCAACAGAGAGAACGAATGCGAGCAGTTGAGTGGGATGCAAGGAAGCAATAAAACAGAACATTGGAAGAACATTAGGATTCAAAGACAAAAAGTTTCAAAATGAACGTTATGAGACAATGAAACGGGCTGCAAAAAGGAATtcgtagagagaggacagaacattaaggatgtgttttattttttattttggaaaGGATGTCAACGTTGTTTTTCAAGTAGCTAACAACATTGCCATTcaaaagGAAATGCATCAGAAGGAGGCAACGCTGATATCTCCAAGGGGTCCTTAGACCTGAGGCTGTTGTCCTCCTGCCCCTCTGCCCACAGCCTCCTACCAAGCTGGTCTCTTTTAATGGTTGGCACTGGCCACCGCGGCCCTGATTACTGCCCACACAGACACAGCCTGATGATCACTGGTGCCATGGGAGCGGTGCGAGTCAACAGATACAGCATTGTAGCCACCGATGAAGACCACTTCAAGATCTCCACCTTGGGCCTCCACAATGGCCATGGTCCCCTGATGCACCACAAtatgactgggaggggtatggggggcggaggaggtggtggtggtggaggaggaggagtgtcagaaggaggaggaggcggcAGCTCGCTAGCCCTGCGAGCAACAGAGCCTGTCCACAACGGCCGCCAGATCTCCACGACGGGGCCCAACCATGTCCGGAGCCGCTTCGTGAAGAAGAACGGCCAGTGCAACGTGGTTTTCCACAACATGGAAGACAAGACGAAACACTATCTGGCCGACATATTTACCACCTGCGTGGACATCCGCTGGCGTTACATGCTGCTCCTCTTCACCTCTACCTTCCTGCTCTCCTGGTTCCTCTTCGGGGTGGTCTTCTGGGGAGTGGCCCTGGCCCATGGGGACTTCGACCTTCGACCCGGCCTGGGAGAGGGGCCTCTGGCCGgcttggagggaggaggggtggagtggAAGCCCTGCATCCTACACGTCCAAGGCTTCGTAGGGGCGTTTCTCTTCTCCATAGAGACCCAGACCACCATTGGGTATGGGTTCCGCTGCGTCACCGAGGAGTGTCCGGCGGCGGTGGCTACGGTGGTGGTCCAGTCCATTGTGGGCTGTATCATCGACTCCTTCATGATCGGAACCATCATGGCCAAGATGGTTCGACCTAAGAAGCGGGCGCAGACCTTGCTGTTCTCGCACCACGCGGTAATCTCCATGCGGGACGGGAAGCTGTGCCTGATGTTTCGCCTGGGGAACATGAGGAAAAGCCACATCGTGGAGGCTCACGTCCGGGCGCAGCTCATCCGGCCGCACGTCACTGCCGAAGGCGAGTACCTCCCCATGGAGCAGACAGACATCGACGTGGGCTACGACGAGGGCCTGGACCGCCTCTTCCTAGTGTCTCCACTGGTCGTGGTCCACGAGATCAACGAGAACAGTCCGCTGTACTGCATGAGCAGCGCCGACCTGACGACAGAGGACTTTGAGATCGTGGTGATACTGGAGGGGATGGTGGAGGCCACGGCCATGACCACCCAGGCCCGCTCCTCCTACCTGGCCAGGGAGATCCTGTGGGGCCATCGCTTCGAGCCTGTGGTCTTCGAGAAGGAGCACCGCTACCAGGTAGACTACTCCCGCTTCCACAAGACCTACGAGGTGCCAGCTACTCCGCACTGCAGCGCCAGGGAGCTCCGGGAGATGACGGGCCGATCCCGCTCCCCCTCGTCTGCCTCCGGCTCTAGTTCTACccggtcagtgtcccctctcggTCCCAAGTCCTCCGGCCTCCACCTCTTGCCTCCACACTCCCCCAGCGCCTTCTGCTACGAGAACGAGGTGGCCCTGTGCtgcggggaggaggagggggaggaggtaggggagaTGGGTGTGATGCTGGGGGGGAGGGACgacggggagggggaggagagggacgtACAACTAGACATCTTCCAGGAGAGATTTCAGGACCAGGTAGCGGTGGACATGAGCATGCTGTGTGTGCTGGACATGGACAATCAGATTGACAGGCTGCAGCCGGGTATAGCTCTTGATGCGCTGGGCTTCAGGAGGGAATCAGGAGTGTAGTGACTGATTCACGCTATCGAGTCAAACTGAGACAAGACAatcctgggctggcctggttacgcaTCCACTGTAGTTGCTGGAACTGTGCTAGAAAGGATATTGTGAGAGGAAAATATCCAAGCCAGCCCGGGCCGTAGCTACATATGAGGACACTGAGGTCCAGACCtagttaattaaaaaaaaaatatatatatatatgtatttttggGGAACTCATTTGGGGTCTCAACTTGCTGTTGAGAGTTAGattagtagaatacacaaggtgcgaTTTTGAAACTTGGCTGCCCCAGTTTTTCTCTGtcactcactgacagtcactcattTAGCCCATGTCgttaaaaataaaattaaaataggtgaattagtctagttagtctagactgaacttgtagtaatcatgacCAAATGACTGACCTCCAGGGttcccccattgattttgttagtcactctcactcagacatcatattaaccataagtcacgtcaaaatgtgtagaattgcaggaacatttcaaaacattttttttaatgctttACCATTTGTTAATAAAATACTTTCTGCTAACAGATTCCCTCAGTACCTAAATTATAGTTTTTAATCCTGGTGCTGAGCTACTTGTGTAGCTAGGCGATGCATTTGTAGatcgactgaggtgaatgaagcaTCAGAAACCATAGTAATAATGGCTTAGGTcgtgttttttttttgctcttctccaaatagcattttagagTTTTTTAATTGTACAGCCCTGAAGCCAGCACATTGTGGTTTGGGTCGGCCCTGTAGTGTGAATCAGTCATAGAAGACTCTCGTGTCTCGTGTCCCGAATGAACGATGTGCCCTTGGTACAGTTCCTCTGCTTTTTTGTGTATCCAACCAAAGTCCtcacagagagaaggaaagaattCTGCAGCACAGCGAAGAAGGAAGGTTGAATGACTTTATTATTCTCTTGAGTTTCTTTTTGTTTTTAAACATAGTTGTGTTCAGTACATGAGTCTAAATTTGTATTTTATAGCGTAAGACTTAAATTCATTCTTATTGTATTCAATATTCAGTTGTATATATTCTCTGGAATAATATTCTTTGTGAAGTGACTTTTGGTTCCATTCAACCAAATCTTGGTACAGTTTTTTTTCATTTACAGATAGCTGTCATGAGTCATTAATACTTTCAAAACCACAAATTAAGTTGATGTGGTATTAAAAAgtattttctgtttgtaaatAAATCATTTTTCATGCTTAGAAACTAGGGCCGGGATGATACCAATATCACGATACTCGTTAATATTGTGTCAAGGAAACAAAGCATGACGCGGATTTAACTTCTTCAGGAAAACATCcgtaatgttggaaacaaacatcattatgttgtcattcagagtcacatttatttattatccAAGCTATAGCACCCaataatttacatacatttttttaagaaccaaagagtttggtctgctttgTGTTTCCAATgaatattgcgatactggtaaCATCACAGACCTATTAGAAACCATGGTAATTTTGTCTTCCTGCTTAAGGTATATTACTGTTAATGTTTGATACATGAGCTATGTATTCCAaaattagtaaatattttatgacGGAAAATAAATGATGGAAAAACAATGAATCTGAACAGAAACTGAGTTGGAAATAGCGTGTATTTTCCAGATAAAGAATAAAGAGCACTTTATTCTGTATTTTATCAAAAGGAATatctaaaaataaaaatgaaatattttAATTGCTGTTTTGTATGAATGAATAAATgtctagtaataataataataaacaagcAGCAGTAGCTGTTCTGGTTGAcacactctgctctgttctcacACAATTTTTTCCCATCAGTCacaaaggtcaaaggtcaaactGACCCCATGTTGATGTCCACCTGTTTCTGACTGCTCATTGGTTGGCCTGGtttggggaagtgtgtgtgtgtgtgtaatgtgaagGCAGGGGGTTGTTGTTCTCTAGCTCAGTGACTCAGAGGTAATTCCATACACACACCTGTCTTTCTTACCATTCTCTCTTTCTAATCCAAAACTGGGGTATTACCCCAAATCTGTGTCGTACTCAAATAGCTCAGTACAGAGAGTTTTTATTTGGCAAGTTGTTTTTTAAAACGTcccagagagtgagggagagaggcttAGATAAAAATAGAAATAGATACAGACTGGAGAAGGACATACTAGGCCG

Function

NR:

description
inward rectifier potassium channel 4-like

GO: NA

KEGG:

id description
K05330 KCNJN; potassium inwardly-rectifying channel subfamily J, other

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567707.2 True 4318 mRNA 0.47 3 21429348 21439487
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493441 sox10 coding downstream 11918 21411626 ~ 21417430 (-)
LOC110493443 NA coding downstream 20101 21407072 ~ 21409247 (-)
LOC110493446 LOC106589449 coding downstream 43700 21377786 ~ 21385648 (-)
ntan1 ntan1 coding downstream 61970 21364150 ~ 21367378 (-)
LOC110493447 LOC106564561 coding downstream 69065 21353194 ~ 21360283 (-)
LOC110493454 NA coding upstream 23513 21463000 ~ 21465098 (-)
mb mb coding upstream 51747 21491234 ~ 21494421 (-)
LOC110493463 LOC106588978 coding upstream 346679 21786166 ~ 21790195 (-)
trnaa-ugc-129 NA coding upstream 391403 21830890 ~ 21830965 (-)
LOC110493466 LOC103354157 coding upstream 411250 21850737 ~ 21851205 (-)
G1427883 NA non-coding downstream 180 21428371 ~ 21429168 (-)
G1427880 NA non-coding downstream 5257 21423612 ~ 21424091 (-)
G1427879 NA non-coding downstream 5758 21422665 ~ 21423590 (-)
G1427871 NA non-coding downstream 29298 21399687 ~ 21400050 (-)
G1427872 LOC106589436 non-coding downstream 30121 21398487 ~ 21399227 (-)
G1427889 NA non-coding upstream 5056 21444543 ~ 21444831 (-)
G1427894 NA non-coding upstream 11487 21450974 ~ 21451202 (-)
G1427896 triobp non-coding upstream 19884 21459371 ~ 21459944 (-)
G1427897 LOC106564544 non-coding upstream 20664 21460151 ~ 21460403 (-)
G1427703 NA other downstream 418028 21007541 ~ 21032030 (-)
LOC110511666 LOC106589939 other downstream 641763 20785995 ~ 20787989 (-)
G1427608 NA other downstream 654973 20772526 ~ 20774375 (-)
G1427470 NA other downstream 872456 20553196 ~ 20556892 (-)
G1428161 LOC106564449 other upstream 187190 21626677 ~ 21627280 (-)
G1428291 LOC106588995 other upstream 364844 21804331 ~ 21804660 (-)
G1428740 NA other upstream 899892 22339379 ~ 22340563 (-)
G1429642 NA other upstream 1814835 23254322 ~ 23254592 (-)
G1429643 NA other upstream 1815406 23254893 ~ 23255180 (-)

Expression

LOC110493440(LOC106564549) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110493440(LOC106564549) Expression in each Bioproject

Bar chart with 11 bars.
LOC110493440(LOC106564549) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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Co-expression Network