XLOC_033223 (tnnt2b)


Basic Information

Item Value
gene id XLOC_033223
gene name tnnt2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54761141 ~ 54796072 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064526
GCCACATATAGTGTCATGTGATCTTCAGATAACTTATATATCAGTGGGTTTTGGCTTTACAGCATACAGCCTTCAGAAACAGAGTGGAAAATAACACCATCTGACTGAGCCAAAACCAGGTCATCATCTAAACATGTCAGAGGGCGTTGAGCATGAACGCTGTGGAAGAACCAGGAGAGGAAGAAGAAACAAAACCAAAGCACAAAACCTTTTTGCCACCTCATGTGCCTCCCAAAATTCCTGATGGAGAGAAAGTTGATTTTGATGATATTCACCGCAAGCGTATGGAGAAAGACCTGACGGAGCTGCAGACTCTCATTGAGGCTCATTTTGAGAAAAGGAAGAAAGAGGAAGAGGAGCTGATCAACCTCACACAGCGCATTGAAAACCGCAGGTCAGAGCGAGCAGAACAGCAGCGCATCCGCACAGAGAGAGACCGAGAGCGGCAGAACAAACTGGCTGAGGAAAAGGCTCGAAAAGAGGAAGAGGAGGCCAAGAGGAAGGCGGACGATGATGCAAAGAAGAAGAAGGTTCTCACAAGCTTCCAATACACCGGATACATGCAGAGGACAGAAAAAAGGGGCGGGCCCAAGAAACAAActgagagagagaagaaaaaaacaatcctGAGCGAACGCCGCAAGGAGTTGAACATCGAGAACATCGGCGCGGACAAGCTGAGAGAAACGGCAAATGAGCTCTGGAAGAAGATGCGGCAGCTGGAGGCCGAGAAGTTTGAGATGCACTACAAATACATGAGCCAGAAATACGAGATCACCGTCTTGAGGAATCGAGTCAGCGACCATCAGAAGAATACCAAAGGATCTAGAAGTAAACGAGGACTGAGGAAGTAAAGCAGCCTCACTGACCCAGCAGGATCATCTGACATGTTTgcatatgcatttttttaaatatattaattattccaAATTACTCTATTTAGTCTTCATCTGAGAGTTTAAGAATAAGAGCCATCTGAAAAGAGTGATGACTCATTGACGCTTTGAGTGACTAATAAGACTGTATTGgtgatattattatgattatttgagGATTATTATGACTCTTTTTGATGTTAATTATAAGCATGTCATCAATACAAAGTGCGATGattgtattgttttttgtgtTGATTTAATAAAccatatacactgcaaaaaaa

Function

symbol description
tnnt2b Predicted to enable tropomyosin binding activity; troponin C binding activity; and troponin I binding activity. Predicted to be involved in cardiac muscle contraction and sarcomere organization. Predicted to act upstream of or within regulation of muscle contraction. Predicted to be part of troponin complex. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple). Orthologous to human TNNT2 (troponin T2, cardiac type).

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0005523 tropomyosin binding molecular_function
GO:0030172 troponin C binding molecular_function
GO:0031013 troponin I binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091106-2 Predicted to enable tropomyosin binding activity; troponin C binding activity; and troponin I binding activity. Predicted to be involved in cardiac muscle contraction and sarcomere organization. Predicted to act upstream of or within regulation of muscle contraction. Predicted to be part of troponin complex. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple). Orthologous to human TNNT2 (troponin T2, cardiac type).

Ensembl:

ensembl_id ENSDARG00000100694

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064526 True 1162 mRNA 0.43 12 54761141 54796072

Neighbor

gene id symbol gene type direction distance location
XLOC_033222 NA coding downstream 7026 54747948 ~ 54754115 (-)
XLOC_033220 NA coding downstream 237690 54497804 ~ 54523451 (-)
XLOC_033221 dre-let-7a-6 coding downstream 254555 54506458 ~ 54506586 (-)
XLOC_033219 CR847944.1 coding downstream 274731 54481941 ~ 54486410 (-)
XLOC_033218 CR847944.2 coding downstream 295764 54459413 ~ 54465377 (-)
XLOC_033224 tnni1b coding upstream 9064 54805136 ~ 54826061 (-)
XLOC_033225 CU861466.1 coding upstream 18849 54814921 ~ 54815037 (-)
XLOC_033226 csrp1b coding upstream 42197 54838269 ~ 54845622 (-)
XLOC_033227 NA coding upstream 80105 54876177 ~ 54886711 (-)
XLOC_033228 NA coding upstream 226764 55022836 ~ 55028913 (-)
XLOC_033212 NA non-coding downstream 587068 54164932 ~ 54174073 (-)
XLOC_033203 NA non-coding downstream 1503073 53252557 ~ 53258068 (-)
XLOC_033230 NA non-coding upstream 477934 55274006 ~ 55278163 (-)
XLOC_033236 CR847793.2 non-coding upstream 751063 55547135 ~ 55547270 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_16835641_16841074 NA coding CI01000340 null 16835250 ~ 16841074 (-)