LOC110493463 (LOC106588978)


Basic Information

Item Value
gene id LOC110493463
gene name LOC106588978
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 21786166 ~ 21790195 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949375.1
TATGGGTGGAGTttgggaaaggggaaagggagggaaggggccgaagagaaaaaaaagagtgaTGTGTAGGCTATGAATTCGATGCTGGGTGGATCTAACGTTACAGCTTTTCAGAATTGCAAATAACTATCGTGCGTAAAAGCTACTTCACAGTTAGTCACAATGTTGGTCCTGGCTGGAAtcgttgttcttcacattaccgccATCATCCTGCTTCTGGTTGCAACCATTGATAATGCCTGGTGGCTCACAGACTCAGTGGCCACAGATGTGTGGGGCCGGTGGGAACTGGCAGGCTCAGCTTGGCACTACACCAACCTCAAAGGAGACTATGCTGAAGAATACCTCCAGGTAGTGCAGGCCGGAGCAGTGCTGGCTTGCATCTTCTCCATTCTGGGCCTGTTTGTGTTCGTGGCTCAACTCTTCACCTTGTCCAAGGGTCAGAGGTTCACCTTCTCTGGAGCCTTGATGCTCATCTCCTGTCTGTGTGTAATGATTGCTGCGTCCATCTACACGGACATCTTCCACAAGCAGGACCAGGGCTGGTTCGGACACTCTTTCATCCTGGCATGGATCTCCTTCGTTCTCACCTTCATACTGGGCATCATCTACGTGGTCCTGCGCAAGAAGAGCGAGTAGAGGAACAagggatgaaggggaggagaggaggattgtAAGGAAGGATAGTTTTTATTACGTTTTTGCATTGTGTtggaaagggatggagggagggtaggGGTCTTATTTAGTTTATTAACAGTCCCAGTATTTCGATTTTTCTTGTGAGGAGGAAGGTGGTACAGAAGGGGGGAGAGCGGACCCCAAAGAATTGTATGCACAATCAATTTCTATGCAGACTACTGCATGCCTGTTCAAATGGGAGATTTTTAATGTGTAATTGATATAGTACTGTATATTTCAAGGTATGCTACATAGCTGTTGCAGTACTTGAACAATCAGCAAACAAGCTTCATTTCCAGTACATGTTTTAAAAGGAAattgaatttttattttttataactgAAGTATTTTATAACCAATTgtaattgttttttaaaatctaaatACATTGTAACCGTTTGTTGTGTAATTGTCGTAACGTGTATTCTAAGTGCATTTTAATCGTGTGTGATTCTGAGTTTTGGTTGGCTTCTATATCAAAGTACATTTTAATCATGTGTGTGATTCTGAGTTTTGGTTGGCTGCTATATCAAAGTACATTTTAATCATGTGTGTGATTCTGAGTTTTGGTTGGCTGCTATATCAAAGTACATTTTAATTTGTACAAGTGAAAAAGGTCAACCAGGAACAGAGGTCAATGCGGTGTATGTAATATCACCATTTATTATAATGCAGTAGAGGGATTCTGTTTTGTAATTACATTGGAATTTAAGCCATGTTTGTTCAGACTATACAATTtattaacaaaaataaaaacgctAGAAAAAAAA

Function

NR:

description
epithelial membrane protein 2-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949375.1 True 1451 mRNA 0.41 5 21786166 21790195
Loading

Neighbor

gene id symbol gene type direction distance location
mb mb coding downstream 291745 21491234 ~ 21494421 (-)
LOC110493454 NA coding downstream 321068 21463000 ~ 21465098 (-)
LOC110493440 LOC106564549 coding downstream 346679 21429348 ~ 21439487 (-)
LOC110493441 sox10 coding downstream 368736 21411626 ~ 21417430 (-)
LOC110493443 NA coding downstream 376919 21407072 ~ 21409247 (-)
trnaa-ugc-129 NA coding upstream 40695 21830890 ~ 21830965 (-)
LOC110493466 LOC103354157 coding upstream 60542 21850737 ~ 21851205 (-)
LOC110495103 LOC106598553 coding upstream 100486 21890681 ~ 21895100 (-)
LOC118940360 NA coding upstream 129439 21919634 ~ 21923538 (-)
LOC110511450 NA coding upstream 155820 21946015 ~ 21948796 (-)
G1428230 LOC106589277 non-coding downstream 17987 21763201 ~ 21768179 (-)
G1428165 NA non-coding downstream 147515 21636891 ~ 21638651 (-)
G1427950 NA non-coding downstream 247294 21538666 ~ 21538872 (-)
G1427900 NA non-coding downstream 256691 21528898 ~ 21529475 (-)
G1427904 NA non-coding downstream 286279 21498755 ~ 21499887 (-)
G1428285 LOC106588995 non-coding upstream 7746 21797941 ~ 21798486 (-)
G1428290 NA non-coding upstream 13812 21804007 ~ 21804208 (-)
G1428293 NA non-coding upstream 16889 21807084 ~ 21807422 (-)
G1428301 NA non-coding upstream 32512 21822707 ~ 21907883 (-)
G1428323 NA non-coding upstream 78399 21868594 ~ 21870083 (-)
G1428161 LOC106564449 other downstream 158886 21626677 ~ 21627280 (-)
G1427703 NA other downstream 774846 21007541 ~ 21032030 (-)
LOC110511666 LOC106589939 other downstream 998581 20785995 ~ 20787989 (-)
G1427608 NA other downstream 1011791 20772526 ~ 20774375 (-)
G1428291 LOC106588995 other upstream 14136 21804331 ~ 21804660 (-)
G1428740 NA other upstream 549184 22339379 ~ 22340563 (-)
G1429642 NA other upstream 1464127 23254322 ~ 23254592 (-)
G1429643 NA other upstream 1464698 23254893 ~ 23255180 (-)
LOC110493468 cnnm2 other upstream 1562303 23233049 ~ 23353185 (-)

Expression

LOC110493463(LOC106588978) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC110493463(LOC106588978) Expression in each Bioproject

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LOC110493463(LOC106588978) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network