XLOC_033224 (tnni1b)


Basic Information

Item Value
gene id XLOC_033224
gene name tnni1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54805136 ~ 54826061 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064528
ATGCGCACTCTTATAACACTTATAACAGATTTTGTTTGTCAGAGTCTTATGGTGGCTAAAGCGAAGGAGGAGTTAGAACAAGAGCTGGCAGATAAGGAAGACGAGAAGGAGAAATATCTTTCTGAGAAAGCTCCTCAGCTGCAGACTAGTGGGATGTCCTTTGCTGAGCTACAGGAGCTGTGTCGAGAACTACATGCTAAAATCGATGTGGTGGATGAAGAGCGATACGACATTGAGGCGAAAGTACTTCACAACACAAGAGAAATTAAGGATCTGAACATCAAAGTCCTGGATCTGAGGGGTAAATTCAAACGCCCCACCCTGAGGAGAGTCCGGGTGTCGGCCGACGCCATCCTGCGCTCCCTGCTGGGCTCCAAACACAAGGTGTCCATGGACCTCAGAGCAAACCTTAAATCTGTCAAGAAGGAAGACACAGAGAAGGAAAAGACGGTGGAGGTCAGTGACTGGAGGAAGAATGTGGAGGCCATGTCtggaatggaaggaaggaagaaaatgTTTGATGCAGCACAATAAACATCTGATCAAAATCAGCACCTGCGAGTATGCAAATGAATACTAGCATATGCTCAAAACTTTATTTACTAAGGTTTCTTCATGTGAAATTTGGTTGTAGATGCAGAACAAAACAAGGAATTTCTTATCTTTTCACAGGAAACCAGAGAAGGATGAAGGAAAAAAGCGGAGACAATGCTAATTCAAAATGCATTATCTAATATCGAAAGTCATTTATCTACTTTTGTTCAAGTGCCTCAAATCCATATAAGAAATAGAAACACATATACATACTTTCTTTAAATACAAAGATATTTGCCAGTGTGTTCAGTAAACTACAAAAAAGTAGGCCTATTTAAGTTCACGTTACACTATTAGTGTTGGTTGTGTCAATAAATTGTGTAATCTGCAGATATTCGCCATTTCATGTGAATATTTGTTCTGTCTGCACTACACATGATTATTAATGTCATGATTAGCAATGATAAAGCAAATTAAATGGAAATCCAAtgcactaataaaaatataaggtAGTGATAAggttcatcagaagaaaaaagTCATTACTGTAAATCGATTTGTCATTTCATGTGAATGTTTGTACTGTATCCTCCTCTACAGTCAAATATTTGATAAGCAGTTTAGTATGAGAATAATAATCTTACAGGAGTTTAGTcactaataaaatgaataatacatataaatgatAAGCAAATAAACCAAGTggtactcactgcagagccatttgggcagagctgagctccagaaaGGGGGAGCTTAAGCTCTAGCTCCTCCTTCCTTGCGCTTCTTCTACATGTGATGTCACACTGTGGGTTGGGGTgagtgtacgcattaaaacagcttataggaggaggagttggagctcaagctcccccttgctggagcttAAGTGGCTCTGCTGCAAGCAGTGTCTCAAATAAActgtcttcacacacacacacacacaaaaaaaaagtctacatTCTGAAGAATGTTCTGGAAAATGGTGTCTTTTAAGGCCTAAGCAGTTTAGTAAGAgttaaataagttattattatagCAGTTTAGTGACTAATAAAATGATGAATACTTATAATGATAAGCAAATACACTGTAAACTGtgtcttcattaaaaaaaaaataaataaataaaatcaattaaataaaaaaaacgagcctcggctcagttggcgtttctgtgtggagtttgcatgttctccctgcgtttgcttgggtttcctccgggtgctctggttttccccacagtccaaagacatgcggtacaggtgaattgggtaggctaaattgtccgtagtgtataagtgtgtgtgagaatgtgtgagtggatgtttcccagggatgggttgcggctggaagggcatccgctacgtaaaaacgtgctggataagttggcgggttattctgctgtggcgacccgggattaataaagagactaagccgaaaagacaatgaaagaatgaatgaattaaaaatatttttaaaatctccaTTTGGAAGtaggtcaaaaccacaagtgtaTACAgtatgcaactgcacaacaataaTGGTGATTGAAAAGTATATGTTTTGTTGGGCCAAAGCTCATTTTTGACGTCAGTTGCAGGTCAGagggaggggggtgggggggggcgCAAATCGAGACCCAGCAGTTTGAGACCTAGTTAACACTGAATTTATAACAGCTAAGAACGCTAATAACATGATGCAGAGCAAACTgccgacatttaaaaaaaattattattactgcttgttcaaactacttaattaaaatgagctaaaacaacttgatttttaaggttttttgaggacaacttaattgttttatgtccaatcaACTTAAATGTGTAACAATGATGAagtaacttaatctatttgtgttaggacaacataaggaagtgtgtggaaccctgcattttttttacagtgtatgttctGGAAAACAACTTAAGTGATTTAAAGTGATTATATTTTCTCAAAGTGTTACAGATGTGCatgtaatattgtatttttagttTGAGCACTAAGAAATAAAACCAGCAGGCGATGAAGAAACCGGTGGTCATACTCTTTTCGGTTGCTAGAGGGCAGTGTCCACTACACAATTAATGTACAGCCTAtcaaaagtctttgttttataaactgCAGGACTTATTTGAAGCATCCAGAACCACTCATACAATAAAGAGGTG
>TCONS_00064527
ATGCGCACTCTTATAACACTTATAACAGATTTTGTTTGTCAGAGTCTTATGGTGGCTAAAGCGAAGGAGGAGTTAGAACAAGAGCTGGCAGATAAGGAAGACGAGAAGGAGAAATATCTTTCTGAGAAAGCTCCTCAGCTGCAGACTAGTGGGATGTCCTTTGCTGAGCTACAGGAGCTGTGTCGAGAACTACATGCTAAAATCGATGTGGTGGATGAAGAGCGATACGACATTGAGGCGAAAGTACTTCACAACACAAGAGAAATTAAGGATCTGAACATCAAAGTCCTGGATCTGAGGGGTAAATTCAAACGCCCCACCCTGAGGAGAGTCCGGGTGTCGGCCGACGCCATCCTGCGCTCCCTGCTGGGCTCCAAACACAAGGTGTCCATGGACCTCAGAGCAAACCTTAAATCTGTCAAGAAGGAAGACACAGAGAAGGAAAAGACGGTGGAGGTCAGTGACTGGAGGAAGAATGTGGAGGCCATGTCtggaatggaaggaaggaagaaaatgTTTGATGCAGCACAATAAACATCTGATCAAAATCAGCACCTGCGAGAAACCAGAGAAGGATGAAGGAAAAAAGCGGAGACAATGCTAATTCAAAATGCATTATCTAATATCGAAAGTCATTTATCTACTTTTGTTCAAGTGCCTCAAATCCATATAAGAAATAGAAACACATATACATACTTTCTTTAAATACAAAGATATTTGCCAGTGTGTTCAGTAAACTACAAAAAAGTAGGCCTATTTAAGTTCACGTTACACTATTAGTGTTGGTTGTGTCAATAAATTGTGTAATCTGCAGATATTCGCCATTTCATGTGAATATTTGTTCTGTCTGCACTACACATGATTATTAATGTCATGATTAGCAATGATAAAGCAAATTAAATGGAAATCCAAtgcactaataaaaatataaggtAGTGATAAggttcatcagaagaaaaaagTCATTACTGTAAATCGATTTGTCATTTCATGTGAATGTTTGTACTGTATCCTCCTCTACAGTCAAATATTTGATAAGCAGTTTAGTATGAGAATAATAATCTTACAGGAGTTTAGTcactaataaaatgaataatacatataaatgatAAGCAAATAAACCAAGTggtactcactgcagagccatttgggcagagctgagctccagaaaGGGGGAGCTTAAGCTCTAGCTCCTCCTTCCTTGCGCTTCTTCTACATGTGATGTCACACTGTGGGTTGGGGTgagtgtacgcattaaaacagcttataggaggaggagttggagctcaagctcccccttgctggagcttAAGTGGCTCTGCTGCAAGCAGTGTCTCAAATAAActgtcttcacacacacacacacacaaaaaaaaagtctacatTCTGAAGAATGTTCTGGAAAATGGTGTCTTTTAAGGCCTAAGCAGTTTAGTAAGAgttaaataagttattattatagCAGTTTAGTGACTAATAAAATGATGAATACTTATAATGATAAGCAAATACACTGTAAACTGtgtcttcattaaaaaaaaaataaataaataaaatcaattaaataaaaaaaacgagcctcggctcagttggcgtttctgtgtggagtttgcatgttctccctgcgtttgcttgggtttcctccgggtgctctggttttccccacagtccaaagacatgcggtacaggtgaattgggtaggctaaattgtccgtagtgtataagtgtgtgtgagaatgtgtgagtggatgtttcccagggatgggttgcggctggaagggcatccgctacgtaaaaacgtgctggataagttggcgggttattctgctgtggcgacccgggattaataaagagactaagccgaaaagacaatgaaagaatgaatgaattaaaaatatttttaaaatctccaTTTGGAAGtaggtcaaaaccacaagtgtaTACAgtatgcaactgcacaacaataaTGGTGATTGAAAAGTATATGTTTTGTTGGGCCAAAGCTCATTTTTGACGTCAGTTGCAGGTCAGagggaggggggtgggggggggcgCAAATCGAGACCCAGCAGTTTGAGACCTAGTTAACACTGAATTTATAACAGCTAAGAACGCTAATAACATGATGCAGAGCAAACTgccgacatttaaaaaaaattattattactgcttgttcaaactacttaattaaaatgagctaaaacaacttgatttttaaggttttttgaggacaacttaattgttttatgtccaatcaACTTAAATGTGTAACAATGATGAagtaacttaatctatttgtgttaggacaacataaggaagtgtgtggaaccctgcattttttttacagtgtatgttctGGAAAACAACTTAAGTGATTTAAAGTGATTATATTTTCTCAAAGTGTTACAGATGTGCatgtaatattgtatttttagttTGAGCACTAAGAAATAAAACCAGCAGGCGATGAAGAAACCGGTGGTCATACTCTTTTCGGTTGCTAGAGGGCAGTGTCCACTACACAATTAATGTACAGCCTAtcaaaagtctttgttttataaactgCAGGACTTATTTGAAGCATCCAGAACCACTCATACAATAAAGAGGTG
>TCONS_00064529
AACAATAAGAGGGTGTCTTAAAAAAGAGAGGCATTGTTCTAGAGCATCATTATCAAGAAGATTTCTCTGACCATCCGAGCACTACAAGGTTGAAGCACCATTGTAAAGATGCCCGATCTACAGAAAAAGTCCAAGATCTCTGCATCTCGCAAGCTGATGCTAAAGAGTCTTATGGTGGCTAAAGCGAAGGAGGAGTTAGAACAAGAGCTGGCAGATAAGGAAGACGAGAAGGAGAAATATCTTTCTGAGAAAGCTCCTCAGCTGCAGACTAGTGGGATGTCCTTTGCTGAGCTACAGGAGCTGTGTCGAGAACTACATGCTAAAATCGATGTGGTGGATGAAGAGCGATACGACATTGAGGCGAAAGTACTTCACAACACAAGAGAAATTAAGGATCTGAACATCAAAGTCCTGGATCTGAGGGGTAAATTCAAACGCCCCACCCTGAGGAGAGTCCGGGTGTCGGCCGACGCCATCCTGCGCTCCCTGCTGGGCTCCAAACACAAGGTGTCCATGGACCTCAGAGCAAACCTTAAATCTGTCAAGAAGGAAGACACAGAGAAGGAAAAGACGGTGGAGGTCAGTGACTGGAGGAAGAATGTGGAGGCCATGTCtggaatggaaggaaggaagaaaatgTTTGATGCAGCACAATAAACATCTGATCAAAATCAGCACCTGCGAGAAACCAGAGAAGGATGAAGGAAAAAAGCGGAGACAATGCTAATTCAAAATGCATTATCTAATATCGAAAGTCATTTATCTACTTTTGTTCAAGTGCCTCAAATCCATATAAGAAATAGAAACACATATACATACTTTCTTTAAATACAAAGATATTTGCCAGTGTGTTCAGTAAACTACAAAAAAGTAGGCCTATTTAAGTTCACGTTACACTATTAGTGTTGGTTGTGTCAATAAATTGTGTAATCTGC
>TCONS_00064530
CAGAAAAAGTCCAAGATCTCTGCATCTCGCAAGCTGATGCTAAAGAGTCTTATGGTGGCTAAAGCGAAGGAGGAGTTAGAACAAGAGCTGGCAGATAAGGAAGACGAGAAGGAGAAATATCTTTCTGAGAAAGCTCCTCAGCTGCAGACTAGTGGGATGTCCTTTGCTGAGCTACAGGAGCTGTGTCGAGAACTACATGCTAAAATCGATGTGGTGGATGAAGAGCGATACGACATTGAGGCGAAAGTACTTCACAACACAAGAGAAATTAAGGATCTGAACATCAAAGTCCTGGATCTGAGGGGTAAATTCAAACGCCCCACCCTGAGGAGAGTCCGGGTGTCGGCCGACGCCATCCTGCGCTCCCTGCTGGGCTCCAAACACAAGGTGTCCATGGACCTCAGAGCAAACCTTAAATCTGTCAAGAAGGAAGACACAGAGAAGGAAAAGACGGTGGAGGTCAGTGACTGGAGGAAGAATGTGGAGGCCATGTCtggaatggaaggaaggaagaaaatgTTTGATGCAGCACAATAA
>TCONS_00064760
TATCAAGAAGATTTCTCTGACCATCCGAGCACTACAAGGTTGAAGCACCATTGTAAAGATGCCCGAGTGAGTATATtgtgtctgtgttttgttttgttttttctgttgttcGTCATCCTAGATATCTTACAACCCCGTCGAAAAACACATGTGCTCTATTCTCGGATTCACCGGCTGTGTCCTCTTAACTCAAGGCCTGTGTTAATGAAGGCGGATTAGGAGGACAACACAGTCAGAGAGAGCGTGAGAGAGCcgtgaaaatctgaaatatataaataaacagttttgatataaaaatcaaaacaaattgaAGATTCTGCACATTTTCAATAGGTCACTAATTAGGTGAATTGGCAATTCTAAGAGATTGTTTgtgattgtattttttattattcgtGTAATCaaacttaattaaaaattttagcaaaaacatttgaaattaaGTTTAAGCAACTAAAGAAATTGCAAGTCACACATAAAAAAGTAGCAAAGTAGCATAGTAAGCAAGGGAgtgctgtcattgttcaaaaatgaaccaaagtgaatataaaaccttcagctcagtaaagcaggctaggcgaaatagcgctatttactgatgttttgttgttaaactgaattaaaaataaataaataaataaataaaataaaataaattgacattATCGATGcagtaaaaggtcccttatgaaactgaaaatagtcacaacaAACTATCTCTGAacgattttagtggctgaacaacacttctgtgcatgtaacccattcataaaacaacacaatgtacatcagctttgcgtgaacaaaagttttttttttagtttttttttttgctcacgttttcaGTCAACGTTTAATGCCTCGCAACTAAATA

Function

symbol description
tnni1b Acts upstream of or within heart development. Predicted to be part of troponin complex. Is expressed in cardiovascular system; lateral plate mesoderm; and musculature system. Orthologous to human TNNI1 (troponin I1, slow skeletal type).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006936 muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-37 Acts upstream of or within heart development. Predicted to be part of troponin complex. Is expressed in cardiovascular system; lateral plate mesoderm; and musculature system. Orthologous to human TNNI1 (troponin I1, slow skeletal type).

Ensembl:

ensembl_id ENSDARG00000052708

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064528 False 2723 mRNA 0.39 4 54805136 54815886
TCONS_00064527 False 2612 mRNA 0.39 5 54805136 54815886
TCONS_00064529 False 935 mRNA 0.43 8 54806936 54826061
TCONS_00064530 False 537 mRNA 0.48 5 54807325 54816567
TCONS_00064760 True 874 lncRNA 0.33 2 54818498 54826011

Neighbor

gene id symbol gene type direction distance location
XLOC_033223 tnnt2b coding downstream 9064 54761141 ~ 54796072 (-)
XLOC_033222 NA coding downstream 51021 54747948 ~ 54754115 (-)
XLOC_033220 NA coding downstream 281685 54497804 ~ 54523451 (-)
XLOC_033221 dre-let-7a-6 coding downstream 298550 54506458 ~ 54506586 (-)
XLOC_033219 CR847944.1 coding downstream 318726 54481941 ~ 54486410 (-)
XLOC_033226 csrp1b coding upstream 12208 54838269 ~ 54845622 (-)
XLOC_033227 NA coding upstream 50116 54876177 ~ 54886711 (-)
XLOC_033228 NA coding upstream 196775 55022836 ~ 55028913 (-)
XLOC_033229 nfatc2b coding upstream 395429 55221490 ~ 55254786 (-)
XLOC_033230 NA coding upstream 447945 55274006 ~ 55278163 (-)
XLOC_033212 NA non-coding downstream 631063 54164932 ~ 54174073 (-)
XLOC_033203 NA non-coding downstream 1547068 53252557 ~ 53258068 (-)
XLOC_033236 CR847793.2 non-coding upstream 721074 55547135 ~ 55547270 (-)
XLOC_033237 CR847793.1 non-coding upstream 729201 55555262 ~ 55555396 (-)

Expression


Co-expression Network