XLOC_033226 (csrp1b)


Basic Information

Item Value
gene id XLOC_033226
gene name csrp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54838269 ~ 54845622 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064532
TCAAACTCTCCTGATCTTCTAGGGATCCAGAATAACACAAACATTCATTAAAGgATGCCACTCGGAGGAGGAAACAAGTGTGGCTGCTGTAAGAAGACAGTGTATTTCGCAGAGGAGGTCCAGTGTGAAGGACAGAGCTTCCACAAGTCCTGCTTTCTGTGCATGGTGTGCAGAAAGAATCTGGACAGTACAACAGTAGCTGTGCATCAGGATGAGATCTACTGCAAATCCTGCTATGGCAAGAAATATGGGCCAAAAGGCTACGGCTTCGGTGGAGGAGCAGGAACTCTGAGCATGGACGGGGGTGAAGCTCTGGGAATCAAACCGGCTGGAGAAACATCTCATCGTCCGACCAACAACCCCAACCCATCAAAATTTGCACAGAAGCTCGGCGGTTCAGATGTTTGTCCTCGCTGTGGAAATGCTGTTTATGCCGCAGAGAAGGTGGTTGGAGGAGGAAACTCTTGGCATAAAAGCTGCTTCAGATGCACAAAGTGTGGAAAGAGTCTGGAATCCACCACACTAGCTGATAAAGATGGAGAGATTTACTGTAAAGGGTGCTATGCCAAGAACTTTGGACCAAAGGGCTTTGGGTTTGGTCAGGGAGCTGGTGCTTTGGCTCATTCCCAGTAAATATAAAGAAGACATTAGTTAAACCAGGAGGACAAACTACTCACTCACCAACTATAAACCTCCAGCTGTCTGAAAAATACACACATCAGTGCCTTTTTTTGGTGCTCAGTATTTGTACTAATTCCAATAAACAACATTTCATGTGGAATCAAATCCTGTATTATCAACCGTTTATTGTCCAGTGCAGCATCATATATTTTCTGttcaataaatgtattatttgttaataaagaTTCAGATGCTC
>TCONS_00064533
ATGCCACTCGGAGGAGGAAACAAGTGTGGCTGCTGTAAGAAGACAGTGTATTTCGCAGAGGAGGTCCAGTGTGAAGGACAGAGCTTCCACAAGTCCTGCTTTCTGTGCATGGTGTGCAGAAAGAATCTGGACAGTACAACAGTAGCTGTGCATCAGGATGAGATCTACTGCAAATCCTGCTATGGCAAGAAATATGGGCCAAAAGGCTACGGCTTCGGTGGAGGAGCAGGAACTCTGAGCATGGACGGGGGTGAAGCTCTGGGAATCAAACCGGCTGGAGAAACATCTCATCGTCCGACCAACAACCCCAACCCATCAAAATTTGCACAGAAGCTCGGCGGTTCAGATGTTTGTCCTCGCTGTGGAAATGCTGTTTATGCCGCAGAGAAGGTGGTTGGAGGAGGAAACTCTTGGCATAAAAGCTGCTTCAGATGCACAAAGTGTGGAAAGAGTCTGGAATCCACCACACTAGCTGATAAAGATGGAGAGATTTACTGTAAAGGGTGCTATGCCAAGAACTTTGGACCAAAGGGCTTTGGGTTTGGTCAGGGAGCTGGTGCTTTGGCTCATTCCCAGTAAAT
>TCONS_00064761
ACTTGTTTAAGGTTGTGCTCCAGTTTTTCTTACTCAAGACAACTTAAAGATGCTTTGCTGAATAAAGTTACCTAGAGCACCAGAGGAGAGCTTAATATCTTAAACTTTTCAGATGCATTACACTTTTGAACaggaatgatgttccaggatcaacatataGAGGTTATAACACCCACATATATAACACCCACCCAGCTCATATGTATATTTTACCAGCTATTAAACTCAGTTTGTATAAATATAATCCGCTCCTTCATACTTACTAACTCTTTCTCTATGTCTGTTGAGCACAGTGGTGTGCAGAAAGAATCTGGACAGTACAACAGTAGCTGTGCATCAGGATGAGATCTACTGCAAATCCTGCTATGGCAAGAAATATGGGCCAAAAGGCTACGGCTTCGGTGGAGGAGCAGGAACTCTGAGCATGGACGGGGGTGAAGCTCTGGGAATCAAACCGGCTGGAGAAACATCTCATCGTCCGACCAACAACCCCAACCCATCAAAATTTGCACAGAAGCTCGGCGGTTCAGATGTTTGTCCTCGCTGTGGAAATGCTGTTTATGCCGCAG

Function

symbol description
csrp1b Predicted to enable actinin binding activity. Predicted to be a structural constituent of muscle. Predicted to be involved in muscle tissue development and sarcomere organization. Predicted to be active in Z disc and nucleus. Orthologous to human CSRP1 (cysteine and glycine rich protein 1).

GO:

id name namespace
GO:0045214 sarcomere organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0060537 muscle tissue development biological_process
GO:0005634 nucleus cellular_component
GO:0030018 Z disc cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0042805 actinin binding molecular_function
GO:0008307 structural constituent of muscle molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-252 Predicted to enable actinin binding activity. Predicted to be a structural constituent of muscle. Predicted to be involved in muscle tissue development and sarcomere organization. Predicted to be active in Z disc and nucleus. Orthologous to human CSRP1 (cysteine and glycine rich protein 1).

Ensembl:

ensembl_id ENSDARG00000030980

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064532 False 877 mRNA 0.44 6 54838269 54845622
TCONS_00064533 False 581 mRNA 0.50 5 54838511 54845083
TCONS_00064761 True 569 lncRNA 0.43 2 54841396 54843429

Neighbor

gene id symbol gene type direction distance location
XLOC_033224 tnni1b coding downstream 12208 54805136 ~ 54826061 (-)
XLOC_033225 CU861466.1 coding downstream 23232 54814921 ~ 54815037 (-)
XLOC_033223 tnnt2b coding downstream 42197 54761141 ~ 54796072 (-)
XLOC_033222 NA coding downstream 84154 54747948 ~ 54754115 (-)
XLOC_033220 NA coding downstream 314818 54497804 ~ 54523451 (-)
XLOC_033227 NA coding upstream 30555 54876177 ~ 54886711 (-)
XLOC_033228 NA coding upstream 177214 55022836 ~ 55028913 (-)
XLOC_033229 nfatc2b coding upstream 375868 55221490 ~ 55254786 (-)
XLOC_033230 NA coding upstream 428384 55274006 ~ 55278163 (-)
XLOC_033231 ube2c coding upstream 442201 55287823 ~ 55297274 (-)
XLOC_033221 dre-let-7a-6 non-coding downstream 331683 54506458 ~ 54506586 (-)
XLOC_033212 NA non-coding downstream 664196 54164932 ~ 54174073 (-)
XLOC_033236 CR847793.2 non-coding upstream 701513 55547135 ~ 55547270 (-)
XLOC_033237 CR847793.1 non-coding upstream 709640 55555262 ~ 55555396 (-)

Expression


Co-expression Network