LOC110493472 (LOC106588633)


Basic Information

Item Value
gene id LOC110493472
gene name LOC106588633
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 23101801 ~ 23123984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949418.1
TTTGTTGAAACGTCAATCACTCGAAAGATGGACGTGAATGGACACTTAGGGAAACACCTACTCAAGACCGTTTCCGGTTTTGAAAACTTGCGTGCTTCTGATCCACACATGTGAGCTTGCATACCAACTTCTGAACTGGATATTTAAAAGAAAAAGACCTTTAAATCAGTAAACAACCATGGCAGCAACGGAGGAGGACTTCCCTCGCGGAGGTAAAACCAAGCAGACCACTGAAAGTAAAGCAGAACCTGTGAGAAGGCATACAGAAGTGGACAATCTGTTCGAGACACATACAGCAGAGGAATCCAAGAAAAGGAAGGGACAGAAAGGGGATGCCTTGAAGAAAGCGAAGAGGCAAAGGACGAGCAAAGAGGAGGCGCTGAAGCTCAATACAACAACCTCTGTAGATATCCTACAGTTAAAAAGCCTGAAGGTGGGTACCCTACTGCTGGGCTGTGTGAAGGAGGTGGCCGATTTTGAGGTGACGATTAACCTGCCCAGCGGCCTTTTGGGATACCTGAACATTTCCAATATCTCGGACTCGTACACCAAGATACTGAGTGACCACCTGGACTCTGCTTCTTCAGAGGAGATCTTCTCTCTCCACAGTCTCTTCTCCCCGGGCATGCTGGTCAGGTGTGTGGTAGCCAGGTTGGACACTGCCAAAGGAGGATCGGTCAGCATTCAGCTGTCAATCAAACCCAAAGAGGTCAACAAGGGCTTGAGTACTGGCTTTCTGAAGGCTGGCTTGATCCTGAGTGGTTGTGTGGAGAGTATTGAGGATCACGGCTACCTGGTTGACCTCGGCATCAAGGGAACCAAGGCCTTCCTGCCCAAGCAGGCAGCCAAAGACAAAACGAATAGTCCGAAAGAGCTGAAGGTGGGCCAGTATGTGACTTCTCTGTTGGAGGAGGTGAAGAACGATGGGCATGTGGTCCGTCTGTCCACCAGCCCCACGGCGGTGGCCCAGGCCGTTGCAGATACCGCGCACGGCTGGACCCTTACCAACCTGCTGCCTGGCCTACTGGTCAAGGCCCAGATCAAAAAGGTGACCCCACGTGGTCTGATTCTGgagttcctctcctccttcaccgGCCTGGTGGACTTTATGCACCTGGAACCAGAACAGGCCTCCACATTCAACGAGGGAGACAGCGTGAAGGCCTGCATCCTTTATGTGGAGCCGTCCACCCGGCTGGTGGGCCTGTCCCTGCGCAGCCACCTGCTGCAGCCAGGGGGCTACGTGGACCTGGTGGCCACTGAGAGGATAGGGGAGGTGGCGCATGGCTGCAAGATGACCGCTCTCCATCACCTGTCTGGAGCCATGCTGGAGCTGCCTGACCAGACTGTGGTGTTTGTACATAGGAACCACATGAAGGAGCCCATGGAGGCGTTCAACCTGAACCGTGTCATGGCCAAGCCTGAACACACCTGTAGGATCATGGACTTCAGCCCCATGGAGCAGGTGCACCTGGTCAGCCTGCGTCAGAGCATCGTTGATGCCCCGTTCTTCAGAAGATACCATGACATCCAACCTGGACAGATTGTTCAGggcATGGTGACGTCCCTCCAGAGCCATGGCATGATGGTGAAGGTGACCGACTACATCAGAGGCCTGGTTCCATGGACACACCTCTCTGACATCATCCTCAAGAACCCAGAGAAGAAGTACACAGTGGGCATGCCCATCAAGTGCAGGgtGTTGTCAGTGGACCCACAGGAGAAGAAGCTGACCCTAACCAGGAAAAAGGCCCTGATAGATTCCTCCCTCCCCCCATTCCTGACCTACGAAGATGCCCGCCGCGGTCGCGTCTCCCACGGGTTCATCGTCTGTGTCAAGGACTTTGGCTGCATCGTCCGTTTCTATGGCGACGTCAAGGGGCTGGTGCCCCCCAACGAGCTCAGCACGGAGCCAGTGGTAGTTCCTGAGAACATGTTCTACGTCGGACAGGTGGTGAAGGCTAAAGTGCTGAACTGTGACGTGGAGAAGGAGAAGCTCCTTCTTTCCTTCAAGGCAGTGGCAGGAGGAGACACTGAGGGACCGTCTAAACCCAAGTTTGACTTTGAGGTTGGGAAGAAAGTGGAGGTTAAGGTGGTGAGTAAAGTCCTTACCGGTCTGGAGGTGTCCATTCTCCCAGAGGAGACCACCGCCTTGCTACCCATGATGCACCTCTCCGACCACGTGTCCAACTGTCTACTGCTGTGGGAGGGGCTGCAAGAGGGTGACATCATCTCCAACATTGTCTGCCTCAGCGAGAAGAAACCGAATATTaCCCTGACTAAAAAGCCCACTCTGAAGTCATTCCTGGAGGAGGGGGGCGTGGTGGCTAAGGAGTTCTCTGACATCGCAGTTGGGGTGCAGCTGATTGGCTGGGTCAAGAACATTATGCCCTACGGAGTGTTTGTGGAGTTCCCCTATGGTCTGGTTGGCCTGGCCCCTAAAGCGGCCATGAGTGACAAGTTCGTCAGTGACACGACATCTCACTTCCAGCTGGGCCATACGGTGTTTGCCAAGGTGACCAACTTGGATGAGGAGAAGCGCAGGTTCCTGGTCAGTCTCAAGGTGTCAGAGGTCCCCTCCCCTGAGAGAGACGGCCAGGCCAGGCTGATCCGAGGCctgcaggagaggaaggaggtgATGGAGATGATGGCCAGCAGAGGTGACTCTGACCTACTCAAGCAGCTGTCTGCGGTGACCATAGGCCAGAGGATGAAGATGAGCGTAGACGAGGTGAGGGAGGACGGGAGTGTCACCTTCAAGTCAGACGAACTCAGCGCAGCCACCGTACTGGCCACCAAGGACCATGCGCCGGGTAAGTTGGCGACGGGACAGGAGTGCATGCCGGTAATCCTTCACGTTGACCTCGTGACCTCTGAAGTCTACGTGTCCCTCTTGGCTAAACTGACCGGCAAGAGGAAAGCGGTGGAGGCAGGGTCCACACACACTGCCACTGTGCATCACGCTGACCGCGACTTTGCCGTCATCTCATTGGGCGACACGGCCCAACTGACGGTCATCCAAACCACCAATCACCCCAACGAAACGTTCCGCTTTGACTCTGAGAAACTGACCGCCGGTAAAACCCTGACGATCACCGTCACCAAATCCAGCTGTGAGGAACTAGGAGGGCTCCCCCTAGTGTCCTGGGAACTTGCCCCGCCCATAAGCAAAAGATTAATCTCCGTCTCCAAGGGGTCAAAGGGCACGTATCGCTACGGCGACGTGGTCAAGGGGAAGGTGAAGACAGTGAAGCCTACGTGTGTGCTGGTGACGCTAGAGGACGGGAGCACGGGGTGCGTGCACGTGTCCGAGATACAGGAAGTGGTGTGCGTGGGAACGTTCCCCACGTCCCTCCTCAAGATAGGAAGTGAGGTCACAGCCCGGGTCATCGGAGGACGGGAGGGCAACAGTCACAGGTTCTTGCCGTTCTCCCATCCCAACTTCACGTACTCCATGCCTGAACTCTCACTTCTTCCCAGGAACCTGAAAGAAGACGCAGATGTTAAGCCAGTCAAGACCAAAGAGAAGCTGAAGCGTTATCAGGTCGGCGACGACGTCATTTGCTTTGTGTCAAAGTACTTTCCAAAGAGGAAGTGTCTAGAAGTGACTACTGGTCCCTCAGTAACTGGAACTGTTGAACAACTGGccatgacctctgaccctgaAGGTGCCAAACACCCAGAGAAGCTGTTCAAGCTGGGCCAGGCGGTCAGTGCTAAGGTGGTGAGAGTCAGCTCCTCCAAGCCCTCACGCCTCTCATTGTCCCTCAATGGTGTACACAAGTTGGAGAAGGGCCATGTAATCATGGGGTTGGTGCAGAAGCTAGATCCAGTCCTGGGTCTGCTGGTGAAGCTGCCGTTCAGCGCCATGGGAACGGTTGCCATGGAGGACCTAGCCGACAAATATAAGCCAAAACCTCTGGAGCGGTACAGCAAGGACCAGCTGGTCAGGTGCTGCATTGTAGGAGAGGCGACGAGCAATTGGCAGTTGTCCCTCCGCTCTTCGAGGACGAACCCAGAGAAGGCCTCGGTAGTACAGGACCCAGAGATTGTGTCTCTAGAAGACCTGTCAGAGGGGCAGATCGTCAGAGGTTATGTGAGGACTGTCAATGCACAGGGAGTCTTTGTTAGTTTGTCTAGATCCATAAAGGGCAGAGCCCAGTTCCAGAAGGCCACTAAGTACTTTGTGGCTAGCCACCAAGACTATGCCAAGAAAGTACCGCAGGCCACACTGCTCACCACCAAGATCCTCAGCATCGATAAAGAAAGCGGGCTGGTGGATCTGTCTCTGCTCCAAGAGGACACTGGGAGACCAGACGTGCTCCCAGAATCCCTGGGGCTGCACCTGCGCCTGACAGGAGAGGCCAAGGAGAAGCGTGACGCCACCAAGAAGAGGAAACGCACAGAGTCGGAGAGCAAGCAGGGAACTGCAGAAAATGtttcaaagaagaagaagaagaagaaggggaaaGTGGAGGACAGCGACAGCGGAGTGGAGGTGTACttcagagaagaagaggaggaagataagTTGGAGCCTGCGGAAGTAGAGAAGCCCGTCCCAGTGCAGCCGGCCAGACTGCAGGTGACCGGAGGGTTCTCCTGGGATGCAGCCCTGAGCGCCCTGAAACCAGCGTCCGCTGCCCTGGGGGGAGAGGACTCCAGCGACGGGGAGGACGGCGAGGTGAACATTAAGCCCCAGAAGAAGTCTCACCATAAGCAGGAGGTGGAGAAGCGGGAGGCTGAGAAGGCCCTGACCAAGCTGGAGACGGAGCTGATGGACCCAGGCCTGCGACCCCAGACGGCGGCTAGCTTTGAGCGCCTGCTACTCGGCTCCCCTGACAGCTCTCTGCTCTGGCTGCAATTCATGGCCTTCCACCTGCAGGCCACACAGATCGAACAGGCTAGAGCGGTGGCTGAGAGGGCTCTGAAGACTATCTCCTTCAGAGAAGAGCAGGAGAAGCTGAATGTGTGGGTGGCTCTGTTGAACCTGGAGAACCTGTATGGGACAGAGGAGAGTCTTCAGAAGGTGTTTGAGCGAGCCGTGCAGTATTGTGAACCCATGCCCGTCTACCAGCAGCTGGCTGACATCTACGCCAAGTGTCAGAAGACTAAGgaggcGGAAGGTCTGTACAAGACCATGGTGAAGCGGTTCCGTCAGGAGAAGGCTGTGTGGCTGAGCTACGGGACCTTCCTGCTTCAGCAGGGTCAGAGTGACGCGGCCAGCGCCCTGCTACAGAGGGCCATCAAGAGCCTGCCGAACAAAGACAATGTGGATCTGATAGCCAAGTTTGCCCAGCTGGAGTTCCGCTACGGAGACGTAGAGCGAGGAAAGGCCATGTTGGACAGGATCCTAACCAGCTACCCCAAACGCACCGACCTGTGGTCCGTCTTCATAGACCTCATGGTCAAACACGGCTCCCAGAAGGAAGTCCGGGCTGTGTTTGACCGTGTGATCCACCTGAGTGTGGCGGTGAAGAGGATCAAGTTCTTCTTCAAGCGTTACCTGGAGTATGAGAAGAAGAGCGGCACGCCAGAGAGCATCCAGGCTGTCAAGGACAAGGCTCTGGAGTACGTGGAGTCTAAAGGGACAGAGGCCGccagatagagagacacacacacacgtcatgttTTGGGTATTTTCCAACAGCTGTTGTGCAACTGTGGGAAAAGAAGCAAAGAGCTCAAGGGGGAAGCCTGACCTGAGTGTCGTAACAgcctcgacacacacacagatgtagcCACACAGATACACACCCTGCTGTTGGATATTCAGAGAAGACATTTTGTTAATTGTGTGAAAGCTTTCAAATGGTGACATGTCACACATGATATGGACTTGGAAATGTGGGAGGTCATTCTACCTGGTCGTTTTAACCCATTTTGTATAAATAGCataatttaaaataaatatacttttttgtgtgtatgtatggatGACAAATCACGCTGTCCTGACTGAGTAGAATGACAATCATTTTGTAATCAAATAAATGATACTAAATAACCTGA

Function

NR:

description
protein RRP5 homolog isoform X1

GO: NA

KEGG:

id description
K14792 RRP5, PDCD11; rRNA biogenesis protein RRP5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949418.1 True 6012 mRNA 0.54 35 23101801 23123984
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110495105 LOC106588599 coding downstream 7008 23086282 ~ 23094793 (-)
LOC110493478 LOC106588598 coding downstream 27401 23066103 ~ 23074400 (-)
LOC110493477 LOC106588590 coding downstream 36180 23061465 ~ 23065730 (-)
LOC110493485 sec23b coding downstream 507465 22576646 ~ 22594336 (-)
LOC110493486 LOC106564601 coding downstream 529522 22556054 ~ 22572279 (-)
LOC110493473 LOC106564630 coding upstream 1829 23125813 ~ 23133480 (-)
LOC110493470 LOC106564629 coding upstream 54830 23178814 ~ 23185757 (-)
LOC110493468 cnnm2 coding upstream 109065 23233049 ~ 23353185 (-)
LOC110495109 as3mt coding upstream 233599 23357583 ~ 23364991 (-)
LOC110495110 LOC106564588 coding upstream 243263 23366232 ~ 23392263 (-)
G1429574 NA non-coding downstream 5143 23095843 ~ 23096658 (-)
G1429571 NA non-coding downstream 10193 23091393 ~ 23091608 (-)
G1429552 LOC106588597 non-coding downstream 40355 23059070 ~ 23061446 (-)
G1429603 NA non-coding upstream 45762 23169746 ~ 23246188 (-)
G1429597 NA non-coding upstream 93464 23217448 ~ 23221322 (-)
G1429596 NA non-coding upstream 98985 23222969 ~ 23230508 (-)
G1429638 NA non-coding upstream 124054 23248038 ~ 23248295 (-)
G1429641 NA non-coding upstream 129825 23253809 ~ 23254121 (-)
G1428740 NA other downstream 761238 22339379 ~ 22340563 (-)
G1428291 LOC106588995 other downstream 1297141 21804331 ~ 21804660 (-)
G1428161 LOC106564449 other downstream 1474521 21626677 ~ 21627280 (-)
LOC110493443 NA other downstream 1692603 21407072 ~ 21409247 (-)
G1427703 NA other downstream 2090481 21007541 ~ 21032030 (-)
G1429642 NA other upstream 130338 23254322 ~ 23254592 (-)
G1429643 NA other upstream 130909 23254893 ~ 23255180 (-)
LOC110495111 LOC106564590 other upstream 280667 23403904 ~ 23410855 (-)
LOC110493531 NA other upstream 932155 24056129 ~ 24057311 (-)

Expression

LOC110493472(LOC106588633) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110493472(LOC106588633) Expression in each Bioproject

Bar chart with 21 bars.
LOC110493472(LOC106588633) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network