LOC110493470 (LOC106564629)


Basic Information

Item Value
gene id LOC110493470
gene name LOC106564629
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 23178814 ~ 23185757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567764.2
GCCCCCTGCTCTGCTCCCTTTCATCACTCGCCAAGATGAGCTACGGATCTGACTTCAATTCCGCCTCTTCCTACCGAAAGATTTTCGGGGAGTCTCCCCGTTACTCCAGCTCTCCTTCCCGGATGAGTAATGCCTCTTTACGCAGCGGCGGTTACCGGTCCCACTCTCAGTCCCGGAGCATGGGCTCTAACCTGGGCTCCTCTTTCCAACAGAAGAGGTCCTCTGGCCGGTCCTACTCGCAGATGCCCATGCCGATGGAGAACTTGGATTTCGCCCAGAGCACGGTGCTCAACAATGAGTTCAAAATCATCCGCACCAACGAGAAGGAGCAGATGATGGGGCTCAATGACCGCTTTGCCATGTTCATCGACAAGGTTCGCAACTTGGAACAGCAGAACAAGGTGCTCGAGACCGAGCTGGTGACCCTGCGTCAGAGGCAGACGGAGCCCTCGCGCCTGGCGGAACTGTACCAGCAGGAGATCCGCGAGCTGCGCTCCCAGCTGGATGAGGTGAACGGCGAGAAGTCCCAGATCCTCATCGAGCGTGACAACATCGAGGAGGACCTGCAGAAGCTCCGCGGCAAATACGATGACGAGTACCGCCTGCGGGAGGAAGCCGAGCAGACCCTCAAGGCGTTCAAGAAGGACGTGGACGATGCCACCATGGTGCGTTTAGACCTGGAGAAGAAGGTAGAATCCCTCCTCGACGAGATCAACTTCATGAGGAAGGTGCACGAGGAGGAGGTGGCCGAGCTCATGAACATGATCCAAGCCGCCCAGGTGTCCGTGGAGATGGAGGTCTCCAAACCTGACCTCACCTCTGCCCTGAAGGAGATCCGAGGCCAGTACGAGTCCATGGCCTCCAAGAACCTCCAGTCCGCCGAGGAGTGGTACAAGTCGAAGTTCGTTGACCTCAATGAGCAGGCCACCCGTAGCCAGGAGGCGATGCGCGCCAGCCGGGAGGAACTCAACGAGTTCCGGAGGCAGCTCCAGTCCAAGACCATCGAGATCGAGAGCCAGAGGGGAACCAACGAGTCCCTGGAAAGGCAGCTCAACGAGATGGAGGAGAGGCACAACCAGGAGATTGGCCAGTACCAGGACAACATGGCCGAGCTGGACAATGACCTGAGGACCACTAAGAGCGAGATGGCTCGTCACCTGCGGGAGTACCAGGACCTGCTGAATGTCAAGATGGCGCTGGATATTGAAATTGCAGCGTACAGgaaACTCCTGGAAGGGGAAGAGACCCGCATCAGCACAGGCATCACCTACTCCAGCCCCAGCATGAACATGAGGTCCTCCGAGATGAGGTCCTTCGGCATGAGGTCCTCCGAGATGAGGTCTTCCAACATGAGGTCCTCCGACATGACCTCCTCCGGCGACGTGGACTTGCCCAGCATGGGCAGCTACAACCAGACCACCAGGTACACCACCATCTCTGGAGGATCCCAGAAGGACGAGGGAAAGGACCAGGAGGATGGGCAGAGCAAGTCTGGCAAGGGGTCCAACGACGGAGACCAGAAGGAGTCCAGCAACGCCAACCCTACCAACCAGAAAAACTAGACTCTCCCCTTCCCTTAGGTTTAACCTTACAccttccatcccctccctcctactccccatccccctctcccccttcacagGGGTATTCTCAGAGAGGAATCCGTTATAGTTTagactctactactactactgtgtaaCCTACCACTATCCAACAACCAATCACGGTACTTCTCTCCACTCTACTCTCTTACTATGACAATAACAAAGTAGTTACAGGCACACTTCTGGCCCTATCAGGAGACACGTAGGTTATTGTGGTGATAGGAACATACAGTTCAGTACAATACTCCCAACAGATTACTCTCACTTTGGGCTCGCGCTATTGTATGGCACTAGCCTGGTTTAACCAGACTGAACGCTGCGCTCACTAGAAACAACAGTGAAACACAACTAAATCAGTTTGGGACTCCAGGCTAGTTTGGCACCGAGCTGTGATAGATGTCATTCAGTTCAAGAAATAATCATGCACTACTGCCACCGCCTATGATAATATTCTCTATACACATTCCatggggggaggggtgtgtgtgtgtgtgagagtttgaATTTGTGCACGGAAAACAAAAATCCAAAACATATCAGCTTGTTAACTGTTGTTAATACGTCTACTACATCCACATACTACAATATGAAGGGAAGCACCTGTATGGTACGGAGGTGAGAGCTAGAGATCGACCAGGTTGTTAAAGGAGCACACAGTTATTCAAACTCAGCAGAAAACCAAAAAGATCTGTGATCTTGCTGAGCCATTTTTTGCCTTATCTACAACGCAGACAATATTGCGAACTCTGAGTTTCAAAGCAATGCAGATAAAattcttgttttttttcccccagacAAAACATCACGAGTAACAAAATCAGAGTATATCTAAAAGGCTTGTTCGTACCCTGGCCTCGTCACTGTCAATAGCATCTGCCTTATGATCCTGGTCCACTCAAATCTGCATGACAACAGCGCGTAGCTGTTTAAACTGCCACCCCTTCTACACCAGAACCAGAGCTCAACCAACAACGGTTCCATCAAACGCGTAATTACTCTTCAAGATTGCACCTCATGACAATTACTCTAACTTCTACAAAGGCCCAGTCCAGTCAGAAACTTATTTTCCGGTGTTTTATAGATGTttacacactatgaggttggaataattcAGTGAAatggtgaaaatgatgataatgcccttttagtgtaagcgCTGATTGCTGTTTGAATAGACCGCCGGAAATCTCAGCCTGAAAGTGAAACTAGCTAATAATCAAACTGTTATTTGCATGATGTATGTAGCATATCTCAAGCTTGCATGGTGACAGATTGTTAGAGGGCCATACTTCATTTTCACATACTCATAACGTATAGTAGGAAAACAATGGGATGCTAGGTTCCACACTTCATTGCCAGTGCTTTACATTGCCATGTACACAACACTGGTTTTAGAACACGAGGTTGTACGTGCTTAGTTGGCCAGTAAGCTAGACTTGAGATGAATGCCATCATTTAGACAGGATGTGACTTCGACACACGCTGCTGACATTGTCCTCAGCCTCACTGCTTGGTTCTTGTGTGATGATTATGCTAATGATGAGGATGTCCGTCATGACGAGGGTCATATTCAGGGCACTTATGTATCGATCTAGATGGGATTTCATTTGTACTGACGATCAGTTTGTGCAGGCCATGACTGGTTACAAGAAAAGGGGCAATGGGAGAAGTGGAAAGAAAAGTAGGAGGTGTGGGACTctgagaaacagggagaaaggaaatcaaacagagagagagagcgagagagagagagagaaattatctTTCTCACGACAGGCTCAATCAATCAAATAGAGAATGCGTAGGTAGCAAATTACGTTTTAGAACGAATGCATGGGCTTCTACGTGGTCCAATAGGGTGTGACGGACAGAATGTTATGCATGAACTCCATTTCCCACGTTCCATTGCGGACTCCTGAAGCCCGTTTGAATTAACAGCGACGTCCAGCCTCTGAACAGTACCACATCACGACACTACGCCTTAGGAACACAACAACTAACAAGCCAAACAAGCCAAACAAGTAAACAAAAACAAGCCAATAGTCCAGTAAAATGAACCGGACCATGATGCTTTTAAAGCACCATGACCTCTGAAAAATACGGCCATGACGGAATTATTATGTCTGTTGTGAATGATCATGAATGATCTCACCAATAGAAATCTGTACGTAAAGAAACTAGACAGCCCTTTGGTTTCCTTCGTGTGCACTGCCAGGTTTCAACACAACTACTTATGTGAACTTACCTCTGTATCTTAGCTTGAGTGCCAGTCTATTTCTGCTATGTTGCCAGCTCATTGTCTCTCATTGACAgagagttggcaagagagcacaAACAAATCTGGAACTCGGCTACCTCTGTATctatgtctgtctgactgtctgtcacgGCCCTCTAAGTCCTGACCGGCTGCACTCACTCACCCTGCGAATGGAAACCACTGATTTTACAACAGACTATAGAAAGCTGTTGATTGGTGGAGATGTGGTTGCCGTTGTTTTACACGAGGCTTGCGTTACTAAGTGTCTGAGTGTCTGGAGttgtatgtgtttgtatatgcGGACAGTTTCCTGGGGTAACTCATAGTGGGGAATCAGGTTGGGAAAATCAGAAAGTTTGGCCTACCGTTTCCTTAATTCTTGAGCTCCAATGTAAAGGACATTTACAAAGGAAAACTGGGTGCATGTACAAGCACAGCTACATCGACAAGTACAAATACGAGTACAAGTACAAATACGAGTACAAGTACAAGTACAGATACAAGTAGCCTTGTACACAACCACAGGTTTAAGTTTAGAATAGCTCTGACTTCAACGTAATCAAGAGGGTCACAGGTGTCTAAATACCATTTGCAACAAGCCTCTACAACAAacctcactactactactgcagcacTGCCAAACTTTTCTAAAATGCATGTGCGGCAAAAACAACTTGTCGTGTACAAAATAGAGCTGTTTTTGAATACCCGTTGCCACGCAAAACCAAAAACCGACAAAGATAATACAAAACAAAACATGGAATGAATGCTAGAGTGTTGTCAAAATGCCTTAAAACACCAGCCGCTTTCTAACTGAATGGGTCCTGACTTGCACTTCAAGTTTAACCTCCACTTAGCCTCCCATAGATATCAACGCAAGTGGAAATAGGACTTAAGTGGAAGTCGGGATTCATGTGCGTCTACGTGTGGTTATGTTTAGGATGTTTTATTCTCAACCATCTTCCTCTAGCGTTAAGAGCAACAGCTACCATGCTGAACTGAATAACTGGAAACATGTCAACGCTTAGTATCTGAATGTAGTTTGATAGGCTATGCTCTGACTCTGTACCTTACTGCTGATGTATGGCACACACCAATAAAGACTTAATGTATTAAGACTGTA

Function

NR:

description
alpha-internexin-like

GO: NA

KEGG:

id description
K07608 NF66, INA; internexin neuronal intermediate filament protein, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567764.2 True 4987 mRNA 0.48 3 23178814 23185757

Neighbor

gene id symbol gene type direction distance location
LOC110493473 LOC106564630 coding downstream 45334 23125813 ~ 23133480 (-)
LOC110493472 LOC106588633 coding downstream 54830 23101801 ~ 23123984 (-)
LOC118940660 NA coding downstream 58013 23120653 ~ 23120801 (-)
LOC118940679 NA coding downstream 72242 23106330 ~ 23106572 (-)
LOC110495105 LOC106588599 coding downstream 84021 23086282 ~ 23094793 (-)
LOC110493468 cnnm2 coding upstream 47292 23233049 ~ 23353185 (-)
LOC110495109 as3mt coding upstream 171826 23357583 ~ 23364991 (-)
LOC110495110 LOC106564588 coding upstream 181490 23366232 ~ 23392263 (-)
LOC110493511 LOC106564589 coding upstream 206699 23392456 ~ 23400169 (-)
LOC110495111 LOC106564590 coding upstream 218147 23403904 ~ 23410855 (-)
G1429574 NA non-coding downstream 82156 23095843 ~ 23096658 (-)
G1429571 NA non-coding downstream 87206 23091393 ~ 23091608 (-)
LOC110493478 LOC106588598 non-coding downstream 111308 23066103 ~ 23074400 (-)
LOC110493477 LOC106588590 non-coding downstream 113084 23061465 ~ 23065730 (-)
G1429552 LOC106588597 non-coding downstream 117368 23059070 ~ 23061446 (-)
G1429597 NA non-coding upstream 31691 23217448 ~ 23221322 (-)
G1429596 NA non-coding upstream 37212 23222969 ~ 23230508 (-)
G1429638 NA non-coding upstream 62281 23248038 ~ 23248295 (-)
G1429641 NA non-coding upstream 68052 23253809 ~ 23254121 (-)
G1429645 NA non-coding upstream 71898 23257655 ~ 23257949 (-)
G1428740 NA other downstream 838251 22339379 ~ 22340563 (-)
G1428291 LOC106588995 other downstream 1374154 21804331 ~ 21804660 (-)
G1428161 LOC106564449 other downstream 1551534 21626677 ~ 21627280 (-)
LOC110493443 NA other downstream 1769616 21407072 ~ 21409247 (-)
G1427703 NA other downstream 2167494 21007541 ~ 21032030 (-)
G1429642 NA other upstream 68565 23254322 ~ 23254592 (-)
G1429643 NA other upstream 69136 23254893 ~ 23255180 (-)
LOC110493531 NA other upstream 870382 24056129 ~ 24057311 (-)

Expression

LOC110493470(LOC106564629) Expression in all Baseline Samples

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LOC110493470(LOC106564629) Expression in each Bioproject

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LOC110493470(LOC106564629) Expression in each Sample
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Co-expression Network