XLOC_033229 (nfatc2b)


Basic Information

Item Value
gene id XLOC_033229
gene name nfatc2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 55221490 ~ 55254786 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064534
GCGCGCCTCACTGACACTTGGTTCGTTGCCTTAGAAACTAGAAACTATCGCTAACCGTTTTTATTTGGCAGATAACTATCAATTAAccgatttattacatttttatttagtttttacttcaTAAATAACTTTTTTCTTCAAATTACTTGGCTTGAAAACCTGTCCAATGAGTAATTTATACGAAAATATCGACAACCAAGAAGATTTGGACTTTCCATTACTCTTCTTGTACAACCAACCTGGCAACGACTTGCCTCCTGATGACCCAGCTGATGAGCCTGGTGATCCCTCCAACAATGACCCCAATCAAACGTCTTCATGCATTCTTCAAGACCCTTCTTTGTACGGTGAGGAGTCTCAATTCTCCAACGAGACTCTCATGTATCAGCAGTCTGATCTCAGACAGTCTTACAGTCACTCCCCCTCACTCGCTGCCCACCCTGGAAACAGCCCGAGAATTGAGATCACCTGCCCTGACCTGCACCACCACGACCATGTCCTCACCAACCCTGTGAACATCAACCCGCCCATGCTAATGGTCCCAGGCTACGATATGTCTCTCTACAGAGAGACCCAATGCCTGAGTCCAGCTAGCAGCACTTCCTCTACAAGCTGGCATTCAGATGGATATTCCCCATGCATTTCTCCCGGAGCTGGTGAAGTAAGTCCTGCCGGAGTGACCGAAGCCGATCTTTGTCCAATGATCCAAGCTATTCATGCCTCAGGTTCTCCAAACACGTCTCCTCGCACTAGCATCACTGAAGACACGGCTCTGGAACGTCGCTCAACCTCTCCACGCTCCCGCTCTTCTTCTCCGCAGGGGAAGCGCACCTACGTTCAGTACAAGACTCAGAGTCAACAATTTGGCCAAGATGAACCCGCCAAGTTTTATCCGCCGGCAAACTTGGAAGATTCACTGAATAACTTCAGCAACTTGACTAAACCCATCCCGACTAAAATTGTCAGGCCCAATGCAGATTATTCCCTCTACTCGGAGAGCCAGGCGAGCATGTTCCCAGCCATGACGGAAATGAAAAAAGAGTTCACTGTGGAGTCACGATATTTCATTCCTGCCACCTGGCCCAGTCAGGTCCTCGAGGGGGTTTGTAGTATGCCAGTGGCTGCTCTGCCTGCGCTGGACTGGCCTCTTCCATGCAGCAGTGGCCAGTATGAGCTCAGAATCGAGGCTCAACCCAGACAACACCACCGGGCCCACTACGAGACTGAGGGCAGCCGAGGGGCTGTCAAAGCATCCAGCGGAGGCCATCCTGTTGTTCAGTTGCGAGGGTACACCGGGACGGAGCCGCTGGTTCTCCAGATCTTTATTGGCACGGCTGATGACAGGAACCTTAGGCCTCACGCCTTTTACCAGGTCCACCGAATCACCGGCAAGACCGTCACCACCAACAGCCAAGACCGAATGCTGAACGGAACCAAGATCCTTGAGGTGCCGATGGAACCCAAGGAGAACATGAGAGCTGTAATTGACTGTGCCGGTATTCTGAAGCTGAGGAATGCTGACATCGAGCTGAAGAAAGGAGAGACGGATGTGGGACGGAAAAACACCCGTGTGAGATTGGTCTTCCGTGTCCATATTCCTCAACCTGGAGGACAGTGGCTTTCTCTCCAAGTGGCCTCGCAGACCATTGAATGCTCTCAAAGGTCCGGTCATGAGCATCCAGCGGTGGAGCATCAGGACACAGATCACTCTTCAGTTCTAGGCGGAGCGCAGATGATCCTCAGAGGCCAGAACTTCACTCCAGAGTCCAAAGTCATCTTCTTTGAGAAAACGCATGGTGACTTGCAGATCTGGGAGTCTGAAGCGAAGGTTTACAGGGATAAAAGCACATCTAATCTGTTGTTCTTGGAGATTCCTCCGTATCGGGACACAAACATCTACCGGCCAGTAAAAGTCAACTTCCATGTGCTGAACGGGAAGAAGAAATGCAGCCAGTCTCAGAACTTCACCTACACTCCTCTCTCAGTTCCTCAGATTAAAGCGGAGCCTCTTGAAGATTACCATTATGCACAGTTAGGCTGTGGTGTGTCTCCCATTATGGGTGTTTCTCCTCCCGCTGGCCGTCTCACAGACGGTTACATGATGCCCACCAGAGCGCCATACCATCGCCCCCAATCTGCCATGTATCCCGCCGTCCCGCAGCACCACCTGGAGCCCATCCACCACTACCAGATGGCATCCATCCTCTCCACCTCTCCAGCTCATGCTTCGTGCATGGGGACGACACACAGCTCTGCTCCTGTGTTTGTGTCCAGCGCCTACCAGCACAGTAGAGGAAATGACAGCATCCAATCATCCGCCAACATGTTTTCAACCCTGGATGTGTCCGAGCTTTGCAACACCACAGCCCATCAGAAAGCGTATGTAGCAGCAGGACGATCTCCACCCGCCCGCAGCCTCCTGCCCGCGCAGCACCACCGACATGCCAGTCCTGTGAGGGTCAAGCAGGAGAACCTGGACCAGGCCTACCTGGATGACGTGAACGCTGTGATAAGAAAGGACCTCGTGCATAAAACTAATCTCTGATGTCTGAAGACAGATTTGACGTCCTGAAGATGATGTTACGGTACTGATATCTATTTAAATCTGCTTGTTTTTCATATCTATGATTTGTACACAATGATTCGAGCAAGATCACGTTTGACAATATCAGGGAGTTTTATTGTTtctgtatataaatatgtaatgatCAAATCATGGTTTTAATCAAAGATTGACCTGGTTTTATTTATCAGTGTGCAGTTTAAATCAAATGTTTAGCGCAATTTGCTTCGTTGAAAATGGTTTCAGTCATAAACTTATAAAATTTTCATGTACAAATTGAACAACTgatgaaaattataaaaaaatttttgtaATAACTGTTATGTATAAAGTGGTGATTTAACACtcaatgtaatgtttaaaatgcagactAGTTTATTAAGAGTAAGCCGTTTATATGGATAcatcttaataaaatgggaatggttggtgatattaacgtcctgtttgcgGAACATTAGCATATGTGAGggagcaaacttttcaagatgggtggtgacaaTGGtgaccattttgaagtcggccatcttggatccaacttttgttttttcaataggaagagggtcatgtgacacatcaaacttatcgggaatttcacaataaaaacaatggtgtgcttggttttagggtaactttattctttcatgagttatttacaagtttctgatcACTTATAAAacgtgttcaatgtgctgcccattgtgttggattgtcaatgcaaccctcttcttccactcttcacacactgatggcaacaccgcaggagaaatgccagcacaggcttctaGTATcagtagtttcaggtgctgcacatcttgtatcttcacaacATACACAATGGCCTTCAGATGAACCCatagataaaagtctaaggggttcagatcgggagaccttgggggccattcaactggcccacgacgaccaatccacttttttaggaaactgttcatctagaaACGCTCGCTCATGACAcgcataatgtggtggtgcaccattCTGCTGGAAAACTCAGGGATGTGCCAGCTTCAGTGCGTAAAGaaggaaacacatcatcatggagcaatttcaaatatccagtggcctcgaggtttccattgatgaagaatggccccactatcAGTTATCTATGgcgtgaagatacaagatgtgcagcacctgaaactacggatactagaagcctgtg

Function

symbol description
nfatc2b Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000079972

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064534 True 3746 mRNA 0.47 10 55221490 55254786

Neighbor

gene id symbol gene type direction distance location
XLOC_033228 NA coding downstream 192577 55022836 ~ 55028913 (-)
XLOC_033227 NA coding downstream 334779 54876177 ~ 54886711 (-)
XLOC_033226 csrp1b coding downstream 375868 54838269 ~ 54845622 (-)
XLOC_033224 tnni1b coding downstream 395429 54805136 ~ 54826061 (-)
XLOC_033225 CU861466.1 coding downstream 406453 54814921 ~ 54815037 (-)
XLOC_033230 NA coding upstream 19220 55274006 ~ 55278163 (-)
XLOC_033231 ube2c coding upstream 33037 55287823 ~ 55297274 (-)
XLOC_033232 ube2c coding upstream 44725 55299511 ~ 55309190 (-)
XLOC_033233 pcif1 coding upstream 73123 55327909 ~ 55354004 (-)
XLOC_033234 ctsa coding upstream 142021 55396807 ~ 55423220 (-)
XLOC_033222 NA non-coding downstream 467375 54747948 ~ 54754115 (-)
XLOC_033220 NA non-coding downstream 698039 54497804 ~ 54523451 (-)
XLOC_033236 CR847793.2 non-coding upstream 292349 55547135 ~ 55547270 (-)
XLOC_033237 CR847793.1 non-coding upstream 300476 55555262 ~ 55555396 (-)
XLOC_033238 LO017956.1 non-coding upstream 395333 55650119 ~ 55650251 (-)
XLOC_033239 BX470154.1 non-coding upstream 559971 55814757 ~ 55827517 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_17053954_17065047 NA coding CI01000340 null 17052377 ~ 17065047 (-)