Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110493520 |
| gene name | LOC106586688 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 23868339 ~ 23880612 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| NACHT, LRR and PYD domains-containing protein 12-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021567853.2 | False | 3269 | mRNA | 0.49 | 8 | 23868339 | 23874782 |
| XM_021567855.2 | False | 3216 | mRNA | 0.49 | 8 | 23868339 | 23874782 |
| XM_036949446.1 | False | 4534 | mRNA | 0.46 | 7 | 23868339 | 23874782 |
| XR_005036884.1 | False | 4675 | mRNA | 0.47 | 11 | 23872151 | 23880612 |
| XM_021567851.2 | False | 5448 | mRNA | 0.46 | 10 | 23872717 | 23880612 |
| XM_036949445.1 | True | 5351 | mRNA | 0.46 | 10 | 23872717 | 23880612 |
23,864,000
23,866,000
23,868,000
23,870,000
23,872,000
23,874,000
23,876,000
23,878,000
23,878,000
23,880,000
23,882,000
23,884,000
23,886,000
23,888,000
23,890,000
23,892,000
NC_048581.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110495111 | LOC106564590 | coding | downstream | 457484 | 23403904 ~ 23410855 (-) |
| LOC110493511 | LOC106564589 | coding | downstream | 468170 | 23392456 ~ 23400169 (-) |
| LOC110495110 | LOC106564588 | coding | downstream | 476076 | 23366232 ~ 23392263 (-) |
| LOC110495109 | as3mt | coding | downstream | 503348 | 23357583 ~ 23364991 (-) |
| LOC110493468 | cnnm2 | coding | downstream | 515154 | 23233049 ~ 23353185 (-) |
| LOC110493524 | NA | coding | upstream | 1959 | 23882571 ~ 23884474 (-) |
| LOC110493527 | LOC106564701 | coding | upstream | 26787 | 23907399 ~ 23959574 (-) |
| LOC110493529 | LOC106564702 | coding | upstream | 82580 | 23963192 ~ 24031795 (-) |
| LOC110493530 | dtd1 | coding | upstream | 153740 | 24034352 ~ 24051965 (-) |
| LOC110493531 | NA | coding | upstream | 175517 | 24056129 ~ 24057311 (-) |
| G1430486 | NA | non-coding | downstream | 123 | 23866232 ~ 23868216 (-) |
| G1430485 | NA | non-coding | downstream | 2281 | 23865701 ~ 23866058 (-) |
| G1430483 | NA | non-coding | downstream | 6258 | 23861824 ~ 23862081 (-) |
| G1430482 | NA | non-coding | downstream | 7737 | 23860362 ~ 23860602 (-) |
| G1430481 | NA | non-coding | downstream | 10449 | 23857681 ~ 23857890 (-) |
| G1430490 | NA | non-coding | upstream | 4857 | 23885469 ~ 23885856 (-) |
| G1430491 | NA | non-coding | upstream | 5338 | 23885950 ~ 23886309 (-) |
| G1430492 | NA | non-coding | upstream | 5889 | 23886501 ~ 23886876 (-) |
| G1430499 | NA | non-coding | upstream | 22999 | 23903611 ~ 23903841 (-) |
| G1429643 | NA | other | downstream | 613159 | 23254893 ~ 23255180 (-) |
| G1429642 | NA | other | downstream | 613747 | 23254322 ~ 23254592 (-) |
| G1428740 | NA | other | downstream | 1527776 | 22339379 ~ 22340563 (-) |
| G1430651 | NA | other | upstream | 325792 | 24206404 ~ 24207771 (-) |
| G1431278 | NA | other | upstream | 607883 | 24488495 ~ 24489228 (-) |
| cxcf1b | cxcf1b | other | upstream | 1924159 | 25804771 ~ 25806202 (-) |
| G1433142 | LOC106586974 | other | upstream | 2093770 | 25974382 ~ 25982561 (-) |
