Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110493549 |
| gene name | LOC106586869 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 25831945 ~ 25838455 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| neuron-specific protein family member 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021567895.2 | True | 2022 | mRNA | 0.45 | 5 | 25831945 | 25838455 |
25,824,000
25,825,000
25,826,000
25,827,000
25,828,000
25,829,000
25,830,000
25,831,000
25,832,000
25,832,000
25,833,000
25,834,000
25,835,000
25,836,000
25,837,000
25,838,000
25,839,000
25,840,000
NC_048581.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110493539 | LOC106564691 | coding | upstream | 1137514 | 24473710 ~ 24694431 (+) |
| LOC118940090 | NA | coding | upstream | 1478399 | 24334335 ~ 24353546 (+) |
| LOC110493536 | LOC106564693 | coding | upstream | 1579040 | 24133623 ~ 24252905 (+) |
| stn1 | NA | coding | upstream | 1698780 | 24128511 ~ 24133165 (+) |
| col17a1a | LOC106564695 | coding | upstream | 1738691 | 24065339 ~ 24093254 (+) |
| LOC110493548 | LOC106586900 | coding | downstream | 43969 | 25882424 ~ 25884964 (+) |
| LOC110493542 | LOC106564686 | coding | downstream | 55703 | 25894158 ~ 25930603 (+) |
| LOC110493551 | LOC106564685 | coding | downstream | 96833 | 25935288 ~ 25962553 (+) |
| LOC110493547 | LOC106586953 | coding | downstream | 124398 | 25962853 ~ 25977891 (+) |
| LOC110493546 | rssa | coding | downstream | 141327 | 25979782 ~ 25984488 (+) |
| G1432241 | NA | non-coding | upstream | 221015 | 25542547 ~ 25610930 (+) |
| G1432236 | NA | non-coding | upstream | 296408 | 25534974 ~ 25535537 (+) |
| G1432222 | NA | non-coding | upstream | 319528 | 25511842 ~ 25512417 (+) |
| G1432194 | NA | non-coding | upstream | 325074 | 25470808 ~ 25506871 (+) |
| G1432187 | NA | non-coding | upstream | 352366 | 25456267 ~ 25479579 (+) |
| G1432684 | NA | non-coding | downstream | 9104 | 25847559 ~ 25848481 (+) |
| G1432718 | NA | non-coding | downstream | 54761 | 25893216 ~ 25893650 (+) |
| G1432726 | NA | non-coding | downstream | 94954 | 25933409 ~ 25933718 (+) |
| G1432727 | NA | non-coding | downstream | 96268 | 25934723 ~ 25934941 (+) |
| LOC110493543 | LOC106564682 | non-coding | downstream | 167574 | 25993338 ~ 26007055 (+) |
| G1432630 | NA | other | upstream | 8682 | 25762966 ~ 25823263 (+) |
| LOC110493519 | LOC106564707 | other | upstream | 1966547 | 23701419 ~ 23866193 (+) |
| G1429776 | NA | other | upstream | 2384215 | 23447060 ~ 23447730 (+) |
| G1429775 | NA | other | upstream | 2384968 | 23446548 ~ 23446977 (+) |
| LOC110493474 | LOC106588617 | other | upstream | 2730193 | 23095456 ~ 23101754 (+) |
| LOC110493559 | LOC106587120 | other | downstream | 844870 | 26683052 ~ 26685644 (+) |
| LOC110493575 | NA | other | downstream | 1481522 | 27313574 ~ 27333248 (+) |
| LOC118940374 | LOC106587354 | other | downstream | 1698740 | 27534233 ~ 27540054 (+) |
| LOC110493581 | LOC106564710 | other | downstream | 1704732 | 27543187 ~ 27547668 (+) |
| LOC118940376 | LOC106564710 | other | downstream | 1715261 | 27549527 ~ 27555427 (+) |
