XLOC_033232 (ube2c)


Basic Information

Item Value
gene id XLOC_033232
gene name ube2c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 55299511 ~ 55309190 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064536
CAGAGGGACAGTCCCGTCCCTAAAAAGaGGAAAGGTCGTCCTCCGGGTTCAGGATCACAGTATGCATCGCCTCTGAAATTCATCCACATTTTCCACAGACCAATAAAGCGAGAAGGACCGAAGTGGGATCCATCCAGATTGAACGAGAGCAGCACATTCGTTCTGGGATCCAGGGCAAATAAGGCGTTGGGAATGGGCGGTACAAGAGGAAGAATCTACATCAAACATGCAGAACTCTTCAAGTATGCGGCTGACGCTCAGGACAAACACTGGCTTTCAGAAAGACAGCACATGAGAGCCACGGGTGGAAAGATGGCCTATCTGCTTATAGAAGAGGACATTCTAGATCTTGCCAGAAGTGATGATTACaaGGACTCTCCGGAATTGAAAATGGATGAATTGAAACCTTTTAGCGTGCCCATATGGATGGTGGAGAAGATGCAGAAAGCGATGGAGGTGCAGAAATCGGAAAATGAACTTGCCGTGTAA

Function

symbol description
ube2c Predicted to enable DNA binding activity and nucleosome binding activity. Predicted to be active in nucleus. Orthologous to human UBE2C (ubiquitin conjugating enzyme E2 C).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-051030-48 Predicted to enable DNA binding activity and nucleosome binding activity. Predicted to be active in nucleus. Orthologous to human UBE2C (ubiquitin conjugating enzyme E2 C).

Ensembl:

ensembl_id ENSDARG00000101618

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064536 True 489 mRNA 0.48 9 55299511 55309190

Neighbor

gene id symbol gene type direction distance location
XLOC_033231 ube2c coding downstream 2237 55287823 ~ 55297274 (-)
XLOC_033230 NA coding downstream 21348 55274006 ~ 55278163 (-)
XLOC_033229 nfatc2b coding downstream 44725 55221490 ~ 55254786 (-)
XLOC_033228 NA coding downstream 270598 55022836 ~ 55028913 (-)
XLOC_033227 NA coding downstream 412800 54876177 ~ 54886711 (-)
XLOC_033233 pcif1 coding upstream 18719 55327909 ~ 55354004 (-)
XLOC_033234 ctsa coding upstream 87617 55396807 ~ 55423220 (-)
XLOC_033235 slc12a5a coding upstream 140110 55449300 ~ 55585423 (-)
XLOC_033236 CR847793.2 coding upstream 237945 55547135 ~ 55547270 (-)
XLOC_033237 CR847793.1 coding upstream 246072 55555262 ~ 55555396 (-)
XLOC_033225 CU861466.1 non-coding downstream 484474 54814921 ~ 54815037 (-)
XLOC_033222 NA non-coding downstream 545396 54747948 ~ 54754115 (-)
XLOC_033238 LO017956.1 non-coding upstream 340929 55650119 ~ 55650251 (-)
XLOC_033239 BX470154.1 non-coding upstream 505567 55814757 ~ 55827517 (-)
XLOC_033242 NA non-coding upstream 699988 56009178 ~ 56038817 (-)

Expression


Co-expression Network