LOC110493559 (LOC106587120)


Basic Information

Item Value
gene id LOC110493559
gene name LOC106587120
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 26683052 ~ 26685644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567906.2
attttcGAAGAACTGTTTCACCGCATGAAGAATTAAAGTCTTCATTTTAAAGAATTGCCACATGTGGTATGTTCATATGCCTGCCCTAACCCACTTGCGCCCATACAGACGTTGATTTCCGGCGAGGAAACGCCTATAAATAATCAAACCTCCTGGAAAATGTCATTTTACTTTTGTATTTTTAAGTTTAGTTTCACACCAACAAGCAACACTGGGCACACACACTGTGCACACACACTGTGAATGCTCATAAATGTAACACTGTGCACACACTGAGTGCTCAGAAATGTATCGTCATGGAAAAAGAGCAGCACAGACTGCTCTCCAAACTGGCGCAGATGGAAGTCGCGCTCCTGCCCAAGCTTCGTGGAGAAAGCGCAAAGTCGCTGAAGTGTAGCAGCCATGGCAGACGAAAAACCCAAGgAAGGAGTAAAGACGGAGAACAATGACCACATCAACTTGAAGGTGGCAGGACAAGACGGCTCAGTGGTGCAGTTCAAGAtcaaaaggcacacacctctcaGCAAACTCATGAAAGCATATTGCGAAAGACAGGGCCTGACGATTAGGCAAATCCGGTTCCGGTTTGATGGTCAACCCATCAACGAGACAGACACACCAGCACAATTGGAAATGGAAGATGAAGACACAATCGATGTGTTCCAGCAGCAAACGGGAGGTTTTCTTCACTAGGGGCCTATGTTCCCCACCAACACCCCTACCTCCCCTGTCAGCTCGCCTCTACGTTCCCTAATAATGTATTTTCTGAAACTCTGCTTTTGAATTCCAAGTCGACTTCTAACTCCTATCCCTAGGCACTTAATGCCAATCTGAAAAGATTGGATAGGTTTGACCAATATGTTAATACGACTTGCTGTGTTATAGCCGTACTTCCAATCCTTTCAGGTCTACAGGAGTTGGGTCAATTTGGGATTCAGCATACCTAGTTCTACACGTGTCAATACCATTCATTCTGATATTCACATAACATACGGTTGTATATTATTGAGTTTATTCTGTACATAAACATCTGAGCGAGGGCACCCATTGTCAGATCCTGTTTCATGTGCTGAACTAATCCAGCAATCAAAGCCTACAATTCTGGACAATGTCTTTTGGAAGGTGTGTAAGTTCTTTACATCTAATTCACCCGTTTTGAAGATTGCTGGTCAGACTGTTTTCAGAGATGGATTCTTTTTAATAATTGTAGAAGTTGTTTGCGATGCAACTTGTATTGATGTTCTCCAATAAGCCTGCATTTAAATCGACTCACATCTGTTAAATAAATTGATTCTTTTTTAAA
>TU1641244
TGAGTGCTCAGAAATGTATCGTCATGGAAAAAGAGCAGCACAGACTGCTCTCCAAACTGGCGCAGATGGAAGTCGCGCTCCTGCCCAAGCTTCGTGGAGAAAGCGCAAAGTCGCTGAAGTGTAGCAGCCATGGCAGACGAAAAACCCAAGgAAGGAGTAAAGACGGAGAACAATGACCACATCAACTTGAAGGTGGCAGGACAAGACGGCTCAGTGGTGCAGTTCAAGAtcaaaaggcacacacctctcaGCAAACTCATGAAAGCATATTGCGAAAGACAGGGCCTGACGATTAGGCAAATCCGGTTCCGGTTTGATGGTCAACCCATCAACGAGACAGACACACCAGCACAATTGGAAATGGAAGATGAAGACACAATCGATGTGTTCCAGCAGCAAACGGGAGGTTTTCTTCACTAGGGGCCTATGTTCCCCACCAACACCCCTACCTCCCCTGTCAGCTCGCCTCTACGTTCCCTAATAATGTATTTTCTGAAACTCTGCTTTTGAATTCCAAGTCGACTTCTAACTCCTATCCCTAGGCACTTAATGCCAATCTGAAAAGATTGGATAGGTTTGACCAATATGTTAATACGACTTGCTGTGTTATAGCCGTACTTCCAATCCTTTCAGGTCTACAGGAGTTGGGTCAATTTGGGATTCAGCATACCTAGTTCTACACGTGTCAATACCATTCATTCTGATATTCACATAACATACGGTTGTATATTATTGAGTTTATTCTGTACATAAACATCTGAGCGAGGGCACCCATTGTCAGATCCTGTTTCATGTGCTGAACTAATCCAGCAATCAAAGCCTACAATTCTGGACAATGTCTTTTGGAAGGTGTGTAAGTTCTTTACATCTAATTCACCCGTTTTGAAGATTGCTGGTCAGACTGTTTTCAGAGATGGATTCTTTTTAATAATTGTAGAAGTTGTTTGCGATGCAACTTGTATTGATGTTCTCCAATAAGCCTGCATTTAAATCGACTCACATCTGTTAAATAAATTGATTCTTTTTT
>TU1641243
TCCAAACTGGCGCAGATGGAAGTCGCGCTCCTGCCCAAGCTTCGTGGAGAAAGCGCAAAGTCGCTGAAGTGTAGCAGCCATGGCAGACGAAAAACCCAAGgAAGGAGTAAAGACGGAGAACAATGACCACATCAACTTGAAGGTGGCAGGACAAGACGGCTCAGTGGTGCAGTTCAAGAtcaaaaggcacacacctctcaGCAAACTCATGAAAGCATATTGCGAAAGACAGGGCCTGACGATTAGGCAAATCCGGTTCCGGTTTGATGGTCAACCCATCAACGAGACAGACACACCAGCACAATTGGAAATGGAAGATGAAGACACAATCGATGTGTTCCAGCAGCAAACGGGAGGTTTTCTTCACTAGGGGCCTATGTTCCCCACCAACACCCCTACCTCCCCTGTCAGCTCGCCTCTACGTTCCCTAATAATGTATTTTCTGAAACTCTGCTTTTGAATTCCAAGTCGACTTCTAACTCCTATCCCTAGGCACTTAATGCCAATCTGAAAAGATTGGATAGGTTTGACCAATATGTTAATACGACTTGCTGTGTTATAGCCGTACTTCCAATCCTTTCAGGTCTACAGGAGTTGGGTCAATTTGGGATTCAGCATACCTAGTTCTACACGTGTCAATACCATTCATTCTGATATTCACATAACATACGGTTGTATATTATTGAGTTTATTCTGTACATAAACATCTGAGCGAGGGCACCCATTGTCAGATCCTGTTTCATGTGCTGAACTAATCCAGCAATCAAAGCCTACAATTCTGGACAATGTCTTTTGGAAGGTGTGTAAGTTCTTTACATCTAATTCACCCGTTTTGAAGATTGCTGGTCAGACTGTTTTCAGAGATGGATTCTTTTTAATAATTGTAGAAGTTGTTTGCGATGCAACTTGTATTGATGTTCTCCAATAAGCCTGCATTTAAATCGACTCACATCTGTTAAATAAATTGATTCTTTTTT

Function

NR:

description
PREDICTED: small ubiquitin-related modifier 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567906.2 False 1303 mRNA 0.43 4 26683052 26685644
TU1641244 False 1027 TUCP 0.43 4 26683325 26685641
TU1641243 True 977 TUCP 0.43 4 26683375 26685641
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493557 LOC105012273 coding upstream 20186 26622120 ~ 26662866 (+)
LOC110493556 LOC106564672 coding upstream 94642 26463797 ~ 26588410 (+)
LOC110495117 cfap52 coding upstream 221579 26447325 ~ 26461473 (+)
LOC110493555 LOC106564674 coding upstream 241605 26436544 ~ 26441447 (+)
LOC118940367 LOC105012279 coding upstream 295785 26273171 ~ 26387267 (+)
hn1 hn1 coding downstream 1954 26687598 ~ 26699282 (+)
LOC110493561 LOC106564667 coding downstream 72797 26758441 ~ 26800010 (+)
LOC110493562 LOC106595010 coding downstream 126795 26812439 ~ 26815702 (+)
sept9b LOC106564665 coding downstream 158650 26844294 ~ 26928896 (+)
LOC110495152 NA coding downstream 243724 26929368 ~ 26949045 (+)
G1433611 NA non-coding upstream 10067 26672772 ~ 26672985 (+)
G1433609 NA non-coding upstream 10782 26670675 ~ 26672270 (+)
G1433548 NA non-coding upstream 40365 26642374 ~ 26642687 (+)
G1433070 NA non-coding upstream 80852 26601874 ~ 26602200 (+)
G1433069 NA non-coding upstream 83211 26599530 ~ 26599841 (+)
G1433756 NA non-coding downstream 282747 26968391 ~ 26980759 (+)
G1433780 NA non-coding downstream 317694 27003338 ~ 27066851 (+)
G1433835 NA non-coding downstream 421055 27106699 ~ 27108740 (+)
G1432630 NA other upstream 859789 25762966 ~ 25823263 (+)
LOC110493519 LOC106564707 other upstream 2817654 23701419 ~ 23866193 (+)
G1429776 NA other upstream 3235322 23447060 ~ 23447730 (+)
G1429775 NA other upstream 3236075 23446548 ~ 23446977 (+)
LOC110493474 LOC106588617 other upstream 3581300 23095456 ~ 23101754 (+)
LOC110493575 NA other downstream 634333 27313574 ~ 27333248 (+)
LOC118940374 LOC106587354 other downstream 851551 27534233 ~ 27540054 (+)
LOC110493581 LOC106564710 other downstream 857543 27543187 ~ 27547668 (+)
LOC118940376 LOC106564710 other downstream 868072 27549527 ~ 27555427 (+)
LOC110493582 LOC106564710 other downstream 912853 27595643 ~ 27602283 (+)
LOC110493558 LOC106564669 coding upstream 222 26675444 ~ 26683103 (+)

Expression

LOC110493559(LOC106587120) Expression in all Baseline Samples

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LOC110493559(LOC106587120) Expression in each Bioproject

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LOC110493559(LOC106587120) Expression in each Sample
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Co-expression Network