XLOC_033234 (ctsa)


Basic Information

Item Value
gene id XLOC_033234
gene name ctsa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 55396807 ~ 55423220 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064539
TCATCTTCTTCGACAGGTTCAGGTGCAGCGCAGACCATGGATTTATTTCAATGGCGAGTCTCAGCAGATCGGGGGCTTTGTCAAGGAATTTACCAACCTGGCTTTCATCACAGTAAAGGGTTCTGGTCACATGGTTCCCACCGATAAACCAATAGCAGCGTTCACAATGTTCAGCCGCTTCATCACCAAACAGCCTTACTAGAAAATACATGCACACTCACTCAGGCCTTCTACTGTGCTTTTTAAATCTGAATTTGCACTGTCACACGGGTAAAATGATTGAAATGTGGACCACTGACTGTTCCTCTCACCATTTAAAAGCGATCACACCTTCTGTTGGAGTTTTAAGTGCTTTAGTCTTGTGAACTAAATGAACCTGCTGTACATGCAGTAATGAGCGATTCACCGCCTGTACGCCACTGCTTCCAATCAAATGTGATTTAAAGACAAAGATGCGGAGTGTTTGAGTTTAAAGTCAATCCGATGACTATTTTGAGCGATGGATGATGCACATATTGCACAATTTTAGCTTCAATATTAAAGCATAAAGAGTAGCCTTTTTTAAAAGTCATTGCACAGATTATTTTTGTCGTGTTTCTATTAATGCCACACTGTGATGCTCAGTTTAAAACTATTCCTGCAACCTGCGGTACGTTTTTGTGTGCTTTTATAAGGGAATAACATCTGtggctttctttctttttttttctcccaatgtTCGTTTTAATTAAAGACCACTTTTCTATGA
>TCONS_00064540
ATGAGTTTTTAGTCTACTTAATTTCCCAGCCGGTTGGCGTATCGTTTCTTTTTCCACACCTGGGAAGATGCATCTTGTGTTGGTGTGTTTGCTGCTGGGGCTTCTGGAGGCGTTTGGAGCTCCAGATGCGGATGAGATCAAATATCTGCCTGGACTCTCCAAACAGCCCAGCTTCAGACATTATTCTGGATACTTCAATGTGGCGGACAACAAGCACCTTCACTACTGGTTTGTTGAGTCTCAGAAAGATCCGGTCAGCAGTCCGGTTGTTCTGTGGCTGAATGGAGGTCCGGGATGCAGCTCTATGGATGGTTTACTCACTGAACACGGCCCTTTTTTGATCCAAGATGATGGTGCAACTCTAGAATATAATCCTTATGCTTGGAACAAGATTGCAAATGTTTTATACCTGGAGTCACCAGCAGGTGTCGGCTTCTCCTACTCTGATGACAAGCAGTACACAACCAATGACACTGAGGTGGCCATGAACAACTACTTGGCTCTCAAAGCGTTTTTCCAGTTGTTTCCTGAGTTCAGCAAAAACGAGTTTTTCCTGACTGGAGAGAGTTATGGAGGGATTTACATTCCCACATTGGCTGAGATAGTCATGGAAGACAGCAGCATCAATTTAAAGGGGATTGCTGTTGGAAATGGCTTGTCTAGTTATGAGCTGAATGACAACTCTCTGGTCTATTTTGCATACTATCATGGACTTCTTGGGACCAGcttGTGGAATGACCTGCAGAAATTCTGCTGCAAAGATGGAGTGTGTAATTTCTACGACAACCAGGATGTGAACTGCTCCTCTTCTGTCAACACAGTTCAAGTAATTGTCTATCAGTCTGGACTCAACATGTATAATCTGTATGCACCCTGTCCAGGAGGAGTTGGCCAGAGATTTGGCTTTGAAAATGGCCAGTTTGTCATCCGAGACCTGGGACACCATTTCATCAACCATCAGTGGAGCAAAGCACAGAGCGAGAAAATGCGAGGAGTGGTGTCTCTGTTTAAATCTACAAAGCTGGATCCTCCATGCACAAACTCCACTCCATCAACACTGTATCTCAATAACCCGCTGGTCAAGTCTGCGCTTCACATCTCTCCTAATGCTCTGGACTGGGTCATCTGCAGCTCTGAAGTCAATCTGAACTACAACCGGCTGTTCATGGATGTGAAGAAACAATACCTGAAGCTTCTTGGAGCGCTCAAATACCGTGTGCTGGTGTATAATGGAGATGTGGACATGGCCTGCAATTTTCTAGGAGACGAGTGGTTTGTGGAGTCGCTCCAGCAAGAGGTTCAGGTGCAGCGCAGACCATGGATTTATTTCAATGGCGAGTCTCAGCAGATCGGGGGCTTTGTCAAGGAATTTACCAACCTGGCTTTCATCACAGTAAAGGGTTCTGGTCACATGGTTCCCACCGATAAACCAATAGCAGCGTTCACAATGTTCAGCCGCTTCATCACCAAACAGCCTTACTAGAAAATACATGCACACTCACTCAGGCCTTCTACTGTGCTTTTTAAATCTGAATTTGCACTGTCACACGGGTAAAATGATTGAAATGTGGACCACTGACTGTTCCTCTCACCATTTAAAAGCGATCACACCTTCTGTTGGAGTTTTAAGTGCTTTAGTCTTGTGAACTAAATGAACCTGCTGTACATGCAGTAATGAGCGATTCACCGCCTGTACGCCACTGCTTCCAATCAAATGTGATTTAAAGACAAAGATGCGGAGTGTTTGAGTTTAAAGTCAATCCGATGACTATTTTGAGCGATGGATGATGCACATATTGCACAATTTTAGCTTCAATATTAAAGCATAAAGAGTAGCCTTTTTTAAAAGTCATTGCACAGATTATTTTTGTCGTGTTTCTATTAATGCCACACTGTGATGCTCAGTTTAAAACTATTCCTGCAACCTGCGGTACGTTTTTGTGTGCTTTTATAAGGGAATAACATCTGtggctttctttctttttttttctcccaatgtTCGTTTTAATTAAAGACCACTTTTCTATG

Function

symbol description
ctsa Predicted to enable serine-type carboxypeptidase activity. Predicted to act upstream of or within proteolysis. Human ortholog(s) of this gene implicated in galactosialidosis and lysosomal storage disease. Orthologous to human CTSA (cathepsin A).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004180 carboxypeptidase activity molecular_function
GO:0004185 serine-type carboxypeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko04142 Lysosome
ko04614 Renin-angiotensin system
ko01002 Peptidases and inhibitors
ko03110 Chaperones and folding catalysts
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-537 Predicted to enable serine-type carboxypeptidase activity. Predicted to act upstream of or within proteolysis. Human ortholog(s) of this gene implicated in galactosialidosis and lysosomal storage disease. Orthologous to human CTSA (cathepsin A).

Ensembl:

ensembl_id ENSDARG00000098114

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064539 False 748 mRNA 0.40 2 55396807 55399214
TCONS_00064540 True 2028 mRNA 0.44 15 55396808 55423220

Neighbor

gene id symbol gene type direction distance location
XLOC_033233 pcif1 coding downstream 42803 55327909 ~ 55354004 (-)
XLOC_033232 ube2c coding downstream 87617 55299511 ~ 55309190 (-)
XLOC_033231 ube2c coding downstream 99533 55287823 ~ 55297274 (-)
XLOC_033230 NA coding downstream 118644 55274006 ~ 55278163 (-)
XLOC_033229 nfatc2b coding downstream 142021 55221490 ~ 55254786 (-)
XLOC_033235 slc12a5a coding upstream 26080 55449300 ~ 55585423 (-)
XLOC_033236 CR847793.2 coding upstream 123915 55547135 ~ 55547270 (-)
XLOC_033237 CR847793.1 coding upstream 132042 55555262 ~ 55555396 (-)
XLOC_033238 LO017956.1 coding upstream 226899 55650119 ~ 55650251 (-)
XLOC_033239 BX470154.1 coding upstream 391537 55814757 ~ 55827517 (-)
XLOC_033228 NA non-coding downstream 367894 55022836 ~ 55028913 (-)
XLOC_033227 NA non-coding downstream 510096 54876177 ~ 54886711 (-)
XLOC_033225 CU861466.1 non-coding downstream 581770 54814921 ~ 54815037 (-)
XLOC_033222 NA non-coding downstream 642692 54747948 ~ 54754115 (-)
XLOC_033242 NA non-coding upstream 585958 56009178 ~ 56038817 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_17122774_17130168 CTSA coding CI01000340 null 17122396 ~ 17130168 (-)
mexican tetra (Astyanax mexicanus) G113707 ctsa,LOC107587598,LOC107696438,LOC107744356 non-coding NC_035909.1 CM008312.1 25671469 ~ 25683917 (+)