Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110493561 |
| gene name | LOC106564667 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 26758441 ~ 26800010 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036949491.1 | False | 6094 | mRNA | 0.40 | 8 | 26758441 | 26783308 |
| XR_005036890.1 | False | 9379 | mRNA | 0.40 | 15 | 26758441 | 26800010 |
| XR_005036891.1 | False | 6449 | mRNA | 0.41 | 14 | 26758441 | 26800010 |
| XR_005036892.1 | False | 6369 | mRNA | 0.41 | 15 | 26758441 | 26800010 |
| XR_005036893.1 | False | 6353 | mRNA | 0.41 | 15 | 26758441 | 26800010 |
| XR_005036894.1 | False | 6145 | mRNA | 0.41 | 15 | 26758441 | 26800010 |
| XR_005036895.1 | False | 9346 | mRNA | 0.40 | 14 | 26758441 | 26800010 |
| XM_021567908.2 | False | 8223 | mRNA | 0.39 | 8 | 26778371 | 26800010 |
| TU1641285 | True | 5290 | lncRNA | 0.43 | 3 | 26793723 | 26799993 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| hn1 | hn1 | coding | upstream | 59159 | 26687598 ~ 26699282 (+) |
| LOC110493559 | LOC106587120 | coding | upstream | 72797 | 26683052 ~ 26685644 (+) |
| LOC110493558 | LOC106564669 | coding | upstream | 75338 | 26675444 ~ 26683103 (+) |
| LOC110493557 | LOC105012273 | coding | upstream | 95575 | 26622120 ~ 26662866 (+) |
| LOC110493556 | LOC106564672 | coding | upstream | 170031 | 26463797 ~ 26588410 (+) |
| LOC110493562 | LOC106595010 | coding | downstream | 12429 | 26812439 ~ 26815702 (+) |
| sept9b | LOC106564665 | coding | downstream | 44284 | 26844294 ~ 26928896 (+) |
| LOC110495152 | NA | coding | downstream | 129358 | 26929368 ~ 26949045 (+) |
| tnrc6c2 | LOC106564661 | coding | downstream | 254441 | 27054451 ~ 27149300 (+) |
| tefm | LOC106564655 | coding | downstream | 472972 | 27272982 ~ 27276208 (+) |
| G1433611 | NA | non-coding | upstream | 85456 | 26672772 ~ 26672985 (+) |
| G1433609 | NA | non-coding | upstream | 86171 | 26670675 ~ 26672270 (+) |
| G1433548 | NA | non-coding | upstream | 115754 | 26642374 ~ 26642687 (+) |
| G1433070 | NA | non-coding | upstream | 156241 | 26601874 ~ 26602200 (+) |
| G1433069 | NA | non-coding | upstream | 158600 | 26599530 ~ 26599841 (+) |
| G1433756 | NA | non-coding | downstream | 168381 | 26968391 ~ 26980759 (+) |
| G1433780 | NA | non-coding | downstream | 203328 | 27003338 ~ 27066851 (+) |
| G1433835 | NA | non-coding | downstream | 306689 | 27106699 ~ 27108740 (+) |
| G1433838 | NA | non-coding | downstream | 310731 | 27110741 ~ 27113553 (+) |
| G1432630 | NA | other | upstream | 935178 | 25762966 ~ 25823263 (+) |
| LOC110493519 | LOC106564707 | other | upstream | 2893043 | 23701419 ~ 23866193 (+) |
| G1429776 | NA | other | upstream | 3310711 | 23447060 ~ 23447730 (+) |
| G1429775 | NA | other | upstream | 3311464 | 23446548 ~ 23446977 (+) |
| LOC110493575 | NA | other | downstream | 519967 | 27313574 ~ 27333248 (+) |
| LOC118940374 | LOC106587354 | other | downstream | 737185 | 27534233 ~ 27540054 (+) |
| LOC110493581 | LOC106564710 | other | downstream | 743177 | 27543187 ~ 27547668 (+) |
| LOC118940376 | LOC106564710 | other | downstream | 753706 | 27549527 ~ 27555427 (+) |
| LOC110493582 | LOC106564710 | other | downstream | 798487 | 27595643 ~ 27602283 (+) |
