LOC110493562 (LOC106595010)


Basic Information

Item Value
gene id LOC110493562
gene name LOC106595010
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 26812439 ~ 26815702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567909.2
CTGTTCTTTATAAGTAGAGAGAcatacatacagagacagacagcagtacACAGCCAGCTGTGGTAATGGTGATGTCACTGCTGAGGAGTTTGCTGTTGTTCTACTTCTCATTCAATGAATTGACCACAGCAGCAGAAGCCATTCTCTGGGTGAATACGGGGGAGAAGTTTACCATGAAATGCTCCACCACTCTAAAAGACCAGGAAGGAATGTACCTGTATGTTGGgctggacagggacagggaggtgCTGTATTACTACCAGCGTGACTCCAAGCTGACCCCCAGGAAACGCTACTGGGACAGAGTGAAGACTGAGGGACCTGTGGACCAACTGACCATCACCATCAGTAACCTGACCATAGAGGACACAGGTGTCTACTGGTGTGTTTACACAAAATTCAATGAAGCCACATATGAAAATGACATCAACCAAGGAAGAGGCTCCACTCTGGTCGTGGTGAATGGTAGATACGATGCCCTCCAGCTGCCATGCTCCACAGCTACTGCAGTAACACTGACCCCCTTTCACCCAGTCAACGAGAAGCCATGCCCATCCGGCGTGgaaagcatcatcatcatcatcatcatcaccagcaTCTTGACCACCCTGATATGTGCCGTCATCTTCCTCGTCTGGGTCGCTCCACTGGTGAAGAGGTGCTGTAACCAGGGAGGATACACAGCACAGGTCTTTCCTGACTCAGTCTATGAAGACATGGCCCGGAATCACATTTATCCACCAGGCACACAGCAGGTAGAATCGTACCCCTATTCTGTGTCTACCAAAGGAGGAAGTAGGACCACTGTGTAGCTTCTTCAAATGCTTTTTCTGAATATTGCTTCTTTACTTTCTCAGAATTGACAAACCTGTTCTGCTGTTTTTCGCAGTTCTAGCCTCAATGCAAGTCTTATTGGTAaattgtttgtatgtgtgtgcgtcaTACCATGCTTATGTGTGTGAATAAAATCTCTATATGGATAGTATTCATATTTCAACAAAAGAGGGAACATCCAGTGTTATATTCCAGTTCTATTCAACTATATTCTTACGGGGGccagatgtaaaaaaaaagttcATTGCAGGGGGGCcggacattttccacacacaccAGTAAAGCACTTTTCTTCTAATGAAATGTTGCTAAAAGTAGTTAGGGAAGAAGTGGAAAGTGCTCGATCAACGTgagttgaggtgcaaccaaacAATGTGGTCCTCAGTGAAAAGAAACCGGCTCAATGCTTGCTCCCCATTTGAACTATTGAAAGAGTCTTTAAAGTAATTAGGTGATTTGAAAATCATCTGACAACTAAAGCATCTCAATAAATAACAGACAGCAACCATAGTGCTTTTCATTTCGGCACTGAACGTCGGAGTTTGGTGCCGATCTTTTGTGAATGTTCAGAATTGATCAGGGGGCCAGTCTAAATTACTGAACGGTTCGGAACTGGCCCGCTGCCGCCAGTTGAATATCCTTGTTTTAGTCCATAAGGTGCACAGTTGATAGCGATGGAGGCCTCCCTATAACTTTTTTCAATAGATCAGGTAATAAGATTTATATTGCTGTTTTTTTTAGTGTTTTTAGGTCACTGGACCACTCATCAAGCTGTTCCTGTGCATGTTGTCTGCACACAAAGTCAAAAGAGCTTCAATGTTAAAATGAGAACATTTTGTTAAGACTTTTATTatattttatcataggtacaaaTATTTTAGCTGCCTAAACTTTCAGGTACATTAGGATATAAGCAATTTGTATAATTACATTTGATTAATCTATGGTTTTAGTTGAGATAGCTAGTAGGTTAAACCATAATGGTCtgagtacattgttttcatgctggTACGGAGTAACGAGTGCGTCTTGTGGTTGGAAAAACTATTTTTACCAAGtgacatagtatttgttttacactACGAGTCActgtttttttaaacttatttttcaACTTCCTAACAGCTATTTTCACTTTAAATAGCTGTAAATGTgttttgcattttttttaaaggaagaaAAATATTCTCACCATTTTACATTTGAATCAAAATATTGATACATCATTGATAGTCATGTGATATTCCACTTGTGTATGTCATGTTTATGTtgtatttgtgtatgtgtttctggCATGCATTGGTGATGTAAAGCTACATTGCTTACAGTATCAATCGAGGAAAAGTTCAGACAGGAAACCAGAGTATTTGTATCTGCTGATATTGAACCAATTAGATTCACTCTACCGTAATATGGCGGTCTATTTAGTTAACCAGGTAATGCACATCATTTCATGATGTCTGCTGCACGCAAGCTATGCACTGGTGTTCTTGGTGACATGCTATGCTGTAACATGCGGTACTCACCCTGCATGTCTGCTTTCTGACCACCCACCCCAGACTCCACCTGTTTGGGCACTGCTTTTGTTTCAGTCAGGGAGATTGGTATAGCATACTTGGCTCTCTGTTTGTTATTATGTTATCATTATGCATGCTCTGGCAGTGAGCTACCCCGAAGGAGCAGAGCCTAACGCCAAGAGTAAAGTATTGACTGTATTGTAGTCTTTTTCTAATAA

Function

NR:

description
uncharacterized protein LOC110493562

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567909.2 True 2569 mRNA 0.41 4 26812439 26815702
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493561 LOC106564667 coding upstream 12429 26758441 ~ 26800010 (+)
hn1 hn1 coding upstream 113157 26687598 ~ 26699282 (+)
LOC110493559 LOC106587120 coding upstream 126795 26683052 ~ 26685644 (+)
LOC110493558 LOC106564669 coding upstream 129336 26675444 ~ 26683103 (+)
LOC110493557 LOC105012273 coding upstream 149573 26622120 ~ 26662866 (+)
sept9b LOC106564665 coding downstream 28592 26844294 ~ 26928896 (+)
LOC110495152 NA coding downstream 113666 26929368 ~ 26949045 (+)
tnrc6c2 LOC106564661 coding downstream 238749 27054451 ~ 27149300 (+)
tefm LOC106564655 coding downstream 457280 27272982 ~ 27276208 (+)
utp6 LOC106564653 coding downstream 480167 27295869 ~ 27308012 (+)
G1433611 NA non-coding upstream 139454 26672772 ~ 26672985 (+)
G1433609 NA non-coding upstream 140169 26670675 ~ 26672270 (+)
G1433548 NA non-coding upstream 169752 26642374 ~ 26642687 (+)
G1433070 NA non-coding upstream 210239 26601874 ~ 26602200 (+)
G1433756 NA non-coding downstream 152689 26968391 ~ 26980759 (+)
G1433780 NA non-coding downstream 187636 27003338 ~ 27066851 (+)
G1433835 NA non-coding downstream 290997 27106699 ~ 27108740 (+)
G1433838 NA non-coding downstream 295039 27110741 ~ 27113553 (+)
G1432630 NA other upstream 989176 25762966 ~ 25823263 (+)
LOC110493519 LOC106564707 other upstream 2947041 23701419 ~ 23866193 (+)
G1429776 NA other upstream 3364709 23447060 ~ 23447730 (+)
G1429775 NA other upstream 3365462 23446548 ~ 23446977 (+)
LOC110493575 NA other downstream 504275 27313574 ~ 27333248 (+)
LOC118940374 LOC106587354 other downstream 721493 27534233 ~ 27540054 (+)
LOC110493581 LOC106564710 other downstream 727485 27543187 ~ 27547668 (+)
LOC118940376 LOC106564710 other downstream 738014 27549527 ~ 27555427 (+)
LOC110493582 LOC106564710 other downstream 782795 27595643 ~ 27602283 (+)

Expression

LOC110493562(LOC106595010) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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LOC110493562(LOC106595010) Expression in each Bioproject

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LOC110493562(LOC106595010) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network