Item | Value |
---|---|
gene id | sept9b |
gene name | LOC106564665 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048581.1 |
NCBI id | CM023235.2 |
chromosome length | 95212422 |
location | 26844294 ~ 26928896 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: neuronal-specific septin-3-like isoform X1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XR_005036898.1 | False | 2726 | mRNA | 0.51 | 12 | 26844294 | 26928278 |
XR_005036899.1 | False | 2583 | mRNA | 0.51 | 12 | 26861224 | 26928278 |
XM_036949492.1 | False | 2035 | mRNA | 0.55 | 11 | 26870017 | 26927504 |
XR_005036896.1 | False | 2717 | mRNA | 0.51 | 12 | 26870017 | 26928278 |
XR_005036897.1 | False | 2717 | mRNA | 0.51 | 12 | 26870017 | 26928278 |
XR_005036900.1 | False | 2079 | mRNA | 0.48 | 11 | 26886867 | 26928278 |
XR_005036901.1 | False | 1973 | mRNA | 0.49 | 11 | 26892149 | 26928278 |
TU1641328 | False | 1256 | lncRNA | 0.36 | 2 | 26927619 | 26928896 |
TU1641343 | True | 1198 | lncRNA | 0.37 | 2 | 26927619 | 26928838 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110493562 | LOC106595010 | coding | upstream | 28592 | 26812439 ~ 26815702 (+) |
LOC110493561 | LOC106564667 | coding | upstream | 44284 | 26758441 ~ 26800010 (+) |
hn1 | hn1 | coding | upstream | 145012 | 26687598 ~ 26699282 (+) |
LOC110493559 | LOC106587120 | coding | upstream | 158650 | 26683052 ~ 26685644 (+) |
LOC110493558 | LOC106564669 | coding | upstream | 161191 | 26675444 ~ 26683103 (+) |
LOC110495152 | NA | coding | downstream | 1090 | 26929368 ~ 26949045 (+) |
tnrc6c2 | LOC106564661 | coding | downstream | 126173 | 27054451 ~ 27149300 (+) |
tefm | LOC106564655 | coding | downstream | 344704 | 27272982 ~ 27276208 (+) |
utp6 | LOC106564653 | coding | downstream | 367591 | 27295869 ~ 27308012 (+) |
LOC110493575 | NA | coding | downstream | 385886 | 27313574 ~ 27333248 (+) |
G1433611 | NA | non-coding | upstream | 171309 | 26672772 ~ 26672985 (+) |
G1433609 | NA | non-coding | upstream | 172024 | 26670675 ~ 26672270 (+) |
G1433548 | NA | non-coding | upstream | 201607 | 26642374 ~ 26642687 (+) |
G1433070 | NA | non-coding | upstream | 242094 | 26601874 ~ 26602200 (+) |
G1433756 | NA | non-coding | downstream | 40113 | 26968391 ~ 26980759 (+) |
G1433780 | NA | non-coding | downstream | 75060 | 27003338 ~ 27066851 (+) |
G1433835 | NA | non-coding | downstream | 178421 | 27106699 ~ 27108740 (+) |
G1433838 | NA | non-coding | downstream | 182463 | 27110741 ~ 27113553 (+) |
G1433846 | NA | non-coding | downstream | 227306 | 27155584 ~ 27159240 (+) |
G1432630 | NA | other | upstream | 1021031 | 25762966 ~ 25823263 (+) |
LOC110493519 | LOC106564707 | other | upstream | 2978896 | 23701419 ~ 23866193 (+) |
G1429776 | NA | other | upstream | 3396564 | 23447060 ~ 23447730 (+) |
G1429775 | NA | other | upstream | 3397317 | 23446548 ~ 23446977 (+) |
LOC118940374 | LOC106587354 | other | downstream | 608917 | 27534233 ~ 27540054 (+) |
LOC110493581 | LOC106564710 | other | downstream | 614909 | 27543187 ~ 27547668 (+) |
LOC118940376 | LOC106564710 | other | downstream | 625438 | 27549527 ~ 27555427 (+) |
LOC110493582 | LOC106564710 | other | downstream | 670219 | 27595643 ~ 27602283 (+) |