Gene
RNA
| Item | Value |
|---|---|
| gene id | tnrc6c2 |
| gene name | LOC106564661 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 27054451 ~ 27149300 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| trinucleotide repeat-containing gene 6C protein-like |
| id | description |
|---|---|
| K18412 | TNRC6, GW182; trinucleotide repeat-containing gene 6 protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036949497.1 | False | 6745 | mRNA | 0.60 | 20 | 27054451 | 27143571 |
| XM_036949496.1 | False | 12591 | mRNA | 0.52 | 21 | 27054451 | 27149300 |
| XM_036949498.1 | False | 5692 | mRNA | 0.63 | 18 | 27091942 | 27143571 |
| XM_036949499.1 | True | 5734 | mRNA | 0.62 | 18 | 27093559 | 27143571 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110495152 | NA | coding | upstream | 105406 | 26929368 ~ 26949045 (+) |
| sept9b | LOC106564665 | coding | upstream | 126173 | 26844294 ~ 26928896 (+) |
| LOC110493562 | LOC106595010 | coding | upstream | 238749 | 26812439 ~ 26815702 (+) |
| LOC110493561 | LOC106564667 | coding | upstream | 254441 | 26758441 ~ 26800010 (+) |
| hn1 | hn1 | coding | upstream | 355169 | 26687598 ~ 26699282 (+) |
| tefm | LOC106564655 | coding | downstream | 123682 | 27272982 ~ 27276208 (+) |
| utp6 | LOC106564653 | coding | downstream | 146569 | 27295869 ~ 27308012 (+) |
| LOC110493575 | NA | coding | downstream | 164864 | 27313574 ~ 27333248 (+) |
| LOC118940369 | NA | coding | downstream | 275152 | 27424452 ~ 27426672 (+) |
| LOC110515386 | LOC106564710 | coding | downstream | 344320 | 27493620 ~ 27496323 (+) |
| G1433756 | NA | non-coding | upstream | 73692 | 26968391 ~ 26980759 (+) |
| G1433611 | NA | non-coding | upstream | 381466 | 26672772 ~ 26672985 (+) |
| G1433609 | NA | non-coding | upstream | 382181 | 26670675 ~ 26672270 (+) |
| G1433846 | NA | non-coding | downstream | 6284 | 27155584 ~ 27159240 (+) |
| G1433855 | NA | non-coding | downstream | 26212 | 27175512 ~ 27231404 (+) |
| G1433900 | NA | non-coding | downstream | 105585 | 27254885 ~ 27258392 (+) |
| G1433902 | NA | non-coding | downstream | 111999 | 27261299 ~ 27261857 (+) |
| G1433906 | LOC106564656 | non-coding | downstream | 115683 | 27264983 ~ 27287348 (+) |
| LOC110493559 | LOC106587120 | other | upstream | 368810 | 26683052 ~ 26685644 (+) |
| G1432630 | NA | other | upstream | 1231188 | 25762966 ~ 25823263 (+) |
| LOC110493519 | LOC106564707 | other | upstream | 3189053 | 23701419 ~ 23866193 (+) |
| G1429776 | NA | other | upstream | 3606721 | 23447060 ~ 23447730 (+) |
| G1429775 | NA | other | upstream | 3607474 | 23446548 ~ 23446977 (+) |
| LOC118940374 | LOC106587354 | other | downstream | 387895 | 27534233 ~ 27540054 (+) |
| LOC110493581 | LOC106564710 | other | downstream | 393887 | 27543187 ~ 27547668 (+) |
| LOC118940376 | LOC106564710 | other | downstream | 404416 | 27549527 ~ 27555427 (+) |
| LOC110493582 | LOC106564710 | other | downstream | 449197 | 27595643 ~ 27602283 (+) |
