tefm (LOC106564655)


Basic Information

Item Value
gene id tefm
gene name LOC106564655
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 27272982 ~ 27276208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567926.2
CATGAAGTGCCTCGGAACGAAGTATGCGTGATCCTTGTTTCCGCATCGGCGTGAGATCGGCGAACAATGAAAGGGCAAAAGTTTGAATGAATTATCTGTAAAATCACGATTACAATGTGGGTTGCAAGGCGATTTATGTCTTTGATCGCCCGGAGAGGGCAGTATGGCTTATTCTACCAACCCCAGGGCTCACTCCCCAAACTAGAATTCCGGTATCTCAACTGCACGTGCTGCTGGAGGAGTCGGATCCCAGTCGCAGGCTTTGAAACCCTTAATGACACCCTCTCTTCATCTACTACTCCTTGCGACGACAAGTCGCTGGACGCATACTACACGTCAGAGCAGCGAGGTGTCATTCTGCAGCTCCTCAACAATGCGGCAGAGTCGGAGCTTGCTGCTGTCAAGCTCCTTCGTGGCCGCAAGTCTGTCAACATTGTGGAATACAGGACTAGAAATGGACCTTTTAAAAATCTCGAAAGCGTCACAAATGTGCCGCTTCTGAAACACAAAAGTGCAGTCATTGTCTTCAACTCCATCCTCAACCCTCCGGAGAAGAAGGAGAAAAGAAAAGTAAAGATCCAGCTAGCCaagttcatcagaccagaggtggAAAGGACCTGGCTAGAGGAAGCAAATTCCATAGTGTCCATTGTGTGTGGAGTGAATAAAATAGCCTGGGCGCACATGGATCGTGGCATGAACGTGTTGGAGTGGAAACATGAGGATTGCCACAACTTTCTGAAGGGAACCTACATGGCTTCTGCCTACTTGGATGACATATCCAGTGTGGTATCCCACCTCCCCACAGCTGACTTCTTCGTTGTGGAAAAGACATCCATCTCCCTTCAGAACACTGCCCTGTACCCAGTAATGGCTCACATGCGTACAGTGGAGGCTATGCTGTTCGCCCTGCTGGAGCCCCGCTACACCCAGCCTGACAACACTGCTCCACCCAAGGTGCTCAACATGATGCGCACCGCCGTCGGCCGCCATTTTGGCCTCATGGTGGGTGACTCCCGCACCAGCGGGGCCCAGGCGATGCAACAGATGATGACGGAGTCAGTGACTCAGAAGATTCCGAGGGTGACATTCCCTCACAACCTGTTGGTGAAATACAGGAATTCCTTCCAGATGGGCGGGCGGAGTCGGGGGGAGGAGCTGTGTGATGCCATGTTGCAGGCTGTGGCGTTTTACGAGCTGCTCAGTGAATCGAGTTAATGTTACAGCGACAATTTCCACGCTCCATTTTCACCAGACTGAAACTAGTTgactgtgtacagtatgtgtgaccTGGTGGTGTCGAAGTTCAGAGCTAACCAGAGACCTGCATATTGGAGGCTTGATGGAAATTGACACTAGCTTATATTTAAAATGTATACTACAACACTTCCCACCTGTAGAGTCAGATGGTTTTGCACTTGAGGTGTCAGTTCAGGCCCCAGCAGCTGTACTCAAGCCTTTCCTCGTACAGACACCACACATCAGGCTTTCTTCACTTTCCCATGAATAGAAATGTTCTCAGGGCCACCAGTAAAGCCGAACAGGCTTGAATATGTACAGTGATGATTTGTCATGTGTGACCACCTACATCTGTACCTTTGTGGGCAAATGTTTAATGAAATACCTGATGCCTGAAATACCACTGATTTTAAACACCAACTCACTGAACCAgcttaaaataaaaagtaacatgtttttatttttacgcATGAATAGGATTATTTcaattatacattttgaatgaatACAGTAAACTTAAATTTACCATTCAGTGTAAGAAAAAATAAGTGTATAGCAAAATATATCATGAACATCCATATTGCCTACATTCACTAAATCACAAGTCATTAACATGGGGAGAGATGATGGCATTAACCTTCCTGTCATCCAGTGTAGAGCCAGAAATGTTGCAGATCTGTTTGTGTAGTCTTGCTGGCTTAAATGGTCATTGTCATGGGAAGTCATCTGCAAGGAGTCTTACAGTAGCCTTAGGGAGGCCAAGGTGAATACTGCTGAGGTAATGCAGAAACAGCATTCATAAGTCATCTTGCGCAATCCTTTTAATTCTAACTTTGTTTTCTCTTAGTAGAAATGAATAAGGTGCTCTCATGCAGTGTATTGACTCACCGGCCTTGGCCCTGCTGAGTTCTCTCCGATTGGCACATGGTGCGGAGGACAGGCAGGTAGTCCACGGCAACAGCCTGCTTGTTTCCCAAGGTGCAGAAGGCTTTGCTTGAGAGGACGGTTCTGATGATGTCATATCTCCTTTCGACCACACTGGAAGACAAACTGCTGTTGAGATACCACACTGACTCAATGGAACTGGAGCTTTACAATGAGAGTTCTATTAAGTTTAATCTTATATCAAGGTTTTGTTTGTAATAATGCTAATTTCTGACAACATTAAACTTGAGTACTAACTTCA

Function

NR:

description
transcription elongation factor, mitochondrial-like

GO: NA

KEGG:

id description
K17658 TEFM; transcription elongation factor, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567926.2 True 2425 mRNA 0.46 4 27272982 27276208
Loading

Neighbor

gene id symbol gene type direction distance location
tnrc6c2 LOC106564661 coding upstream 123682 27054451 ~ 27149300 (+)
LOC110495152 NA coding upstream 323937 26929368 ~ 26949045 (+)
sept9b LOC106564665 coding upstream 344704 26844294 ~ 26928896 (+)
LOC110493562 LOC106595010 coding upstream 457280 26812439 ~ 26815702 (+)
LOC110493561 LOC106564667 coding upstream 472972 26758441 ~ 26800010 (+)
utp6 LOC106564653 coding downstream 19661 27295869 ~ 27308012 (+)
LOC110493575 NA coding downstream 37956 27313574 ~ 27333248 (+)
LOC118940369 NA coding downstream 148244 27424452 ~ 27426672 (+)
LOC110515386 LOC106564710 coding downstream 217412 27493620 ~ 27496323 (+)
LOC118940370 LOC106564710 coding downstream 220226 27496434 ~ 27505085 (+)
G1433902 NA non-coding upstream 11125 27261299 ~ 27261857 (+)
G1433900 NA non-coding upstream 14590 27254885 ~ 27258392 (+)
G1433855 NA non-coding upstream 41578 27175512 ~ 27231404 (+)
G1433846 NA non-coding upstream 113742 27155584 ~ 27159240 (+)
G1433838 NA non-coding upstream 159429 27110741 ~ 27113553 (+)
G1433904 NA non-coding downstream 14164 27290372 ~ 27292130 (+)
G1433945 NA non-coding downstream 103497 27379705 ~ 27380286 (+)
G1433955 NA non-coding downstream 122445 27398653 ~ 27460368 (+)
G1433988 NA non-coding downstream 170033 27446241 ~ 27451970 (+)
LOC110493559 LOC106587120 other upstream 587341 26683052 ~ 26685644 (+)
G1432630 NA other upstream 1449719 25762966 ~ 25823263 (+)
LOC110493519 LOC106564707 other upstream 3407584 23701419 ~ 23866193 (+)
G1429776 NA other upstream 3825252 23447060 ~ 23447730 (+)
G1429775 NA other upstream 3826005 23446548 ~ 23446977 (+)
LOC118940374 LOC106587354 other downstream 260987 27534233 ~ 27540054 (+)
LOC110493581 LOC106564710 other downstream 266979 27543187 ~ 27547668 (+)
LOC118940376 LOC106564710 other downstream 277508 27549527 ~ 27555427 (+)
LOC110493582 LOC106564710 other downstream 322289 27595643 ~ 27602283 (+)

Expression

tefm(LOC106564655) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 25.
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tefm(LOC106564655) Expression in each Bioproject

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tefm(LOC106564655) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network