utp6 (LOC106564653)


Basic Information

Item Value
gene id utp6
gene name LOC106564653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 27295869 ~ 27308012 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567927.2
TTGTTTACTTTTCTGCCTAGCCGTTTGCATATTTCTGGTGCCAATTATAAATCAATACACATGTTGCAGAAACAGTTGTTGCCAAATATTCTCAGTTCTAAACTTATGCAAACCAGAAAACTGATGAAATAGGAAATGTACTGTCTATGTTATATAGTTTTATGGTGAATGTAAATGCAGACCATTACATCTGATTATAATGCATGGTCTAATAATAAAGACCAATACCGAGTTTTTCGCTTGTCAAACGGTAATTTATTGTAAATTCACATGTTTTTGCACGGACCCAGTTGAAGCACGGAACCGGAAGTACAGCAATCACAACTTCCACACGTGTGAAAAATGCTTTTGGGCTAATTTAGTTCACTATTCTTGTTTTTACGGAATACTTTAATAACATTTACAACAGAAGGCAGTCAAAATTAAAGCACCAAGTAAGTGACGATGGCTGAGATAGTCCAACAGCGGATCGAGAATCGAATCCCAGAGTTGGAACAGTTGGAGAGAGTGGGACTGTTCAGCAAAAAAGAAGTCAAATCCATGCTAAAAAGGGCGACAGCTTTAGAATACAAACTGCATCGATTGATCATAACCAAAGTTGACTTCATTGCATACATTCAGtATGAAATCAATGTGTTAGAGCTGATAAAGAAGAGAAGATCACGCATCGGCTATCAGTTCAAAAGAGAGGAGATAGAGTATTCCATCATCTCGAGGATCAACAGCATTTTCAGAAGGGCCACAACTAAATGGAAGGATGATGTGCAGTTGTGGCTCTCTCACATTGCTTTCTGTAAGAAATGGAACACAAAGGCTCAACTCAGCAAGGTGTTCTCCTCCATGCTTGCCATTCATCCTGAGAAACCAGCCCTCTGGATCATGGCTGCCAAGAGCGAGCTGGAGGACAGAAACTTGTCAGAGAGCGCCAGACACCTGTTCCTGCGTGCCCTGCGCTTCCACCCGGAAAGCAAGAAGGTCTACCaagagTACTTCCGTATGGAGCTGTTGCACGCTGAGAAACTGAGGAAGCAacagaaggagctggagcaggctGAGATGGACttgGGAGGGTACGAGTTCTCCCCTGAGATCATGAGTGGCAAACTGGCCGAGTTGGTGTACAGAGATGCTACTGGGAAAATCCAAGGAGCCGATTTCATCCTGTCTCTTTTGACCATCGCCGCCATCTTTGACTTCACTAAAGAACTACAGGACACCATTATACAAGACCTGCAGAGCAAATACACAGACGACTCACTGACGTGGGACTTCATGGCCAAGCGGGAGCTGGAGGCGACGGTGGGGGAGGAGCTTCAGACAGCCAAGGGGCGGGCCTCTGACATCGCCAGGAGAGAGGAGCGCTGCTGCCAGGTCTACGAGGAGGGCCTCAACGGCCTCAACACAGAGGCCATGTGGGCGTGCTACGTGTCCTTCTGCCTGGAGAGGTTCAAGAGGAAAACCAACGTCCAGGAGCTGAAGGAGAAGAGGCAGGAGAGGCTGCTGGCAGTGCTTCAGCGTGCCCACGACTCCTCACTGCTGAAGGAGGACTTCTACAAGAACTGGCTGCAGGTCTTACTCTCATCAGGAGACTCGGAGCAGACCGCTGCGGTTGCCATGGCAGCCACCCAGCGCTACAGACAATCTGTGGACGTGTGGTGCCTGGCCCTGCAGACGATGGTGCATCTGGGGAGTGGCGCCACAGGCAAGCTATTCCAGGACGCCCTGAAACACGTGAATcccaagttgaGTTTGCCCCTGTGGCAGCTGCAGGTGGAGTGGAGCATGACATCACAGAGCCCAGTGGAAACTGAGGCCCTGTTTCAGAGAGGTctgctgtctgtggtgcctgccGTTTCCATGGAGATAAAGGAGAAGTACCTTGACTGGTCCTACAGGGCCGGAGGCTACAAGAAAGCCAGGAAGACCTTCACAAGTTTGCATGAGAGCCGGCCCTTCTCCAAGGCCTTTTTCACCAGAATGATCCAGATGGAGAAAAATCAAGAGACTCCCAAGATGAGCAACCTGAGGGACTTCTATGAGAGAGCCCTGAGGGAATTTGGCTCCACAGATGATGATCTGTGGCTGGAGTACATCCGAGAGGAGCTTGGGCCCAGCGGCCAGCCAGAAAACTGTGGGATGATCCACTGGAGAGccatgaagatgctggagggggAGAGTGTGGAGAGATTCACTGCCCAGTACACCCTGCTGCAGACTGGACACATCTAGAACacacctgaccccccccccccccgctggtCCAACAGTGTTGTAGGAAACTACTTACTGCAGTTTGGATGAGTAGGTAGAAGTTGATCTAACCACTGATACAGAGTCAGATATATTTGATCaacctaatggttaaggttagggtagatCTGTAGTTAAGGGCAACTACATAGAGACAGGGTTAACAAGCTGTTCTGTTTTTATATGACAAGTTACATTTGTACTTTACATTTCCTTGCATTTTGTATACGACGTGGTGTTTCATGCAAGTTTACAACTTGAATCATTTCATTTTGAAGATAGTTATGTTAATGTACACATCAGTAAGAATAACATTATGTATTTACAAAACATTAACCTTGTCACTGTTAACTTGAAATAAAACCATGAATAGTC

Function

NR:

description
U3 small nucleolar RNA-associated protein 6 homolog

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14557 UTP6; U3 small nucleolar RNA-associated protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567927.2 True 2625 mRNA 0.47 19 27295869 27308012
Loading

Neighbor

gene id symbol gene type direction distance location
tefm LOC106564655 coding upstream 19661 27272982 ~ 27276208 (+)
tnrc6c2 LOC106564661 coding upstream 146569 27054451 ~ 27149300 (+)
LOC110495152 NA coding upstream 346824 26929368 ~ 26949045 (+)
sept9b LOC106564665 coding upstream 367591 26844294 ~ 26928896 (+)
LOC110493562 LOC106595010 coding upstream 480167 26812439 ~ 26815702 (+)
LOC110493575 NA coding downstream 6152 27313574 ~ 27333248 (+)
LOC118940369 NA coding downstream 116440 27424452 ~ 27426672 (+)
LOC110515386 LOC106564710 coding downstream 185608 27493620 ~ 27496323 (+)
LOC118940370 LOC106564710 coding downstream 188422 27496434 ~ 27505085 (+)
LOC118940372 LOC106564710 coding downstream 198310 27506322 ~ 27513332 (+)
G1433904 NA non-coding upstream 3739 27290372 ~ 27292130 (+)
G1433906 LOC106564656 non-coding upstream 8521 27264983 ~ 27287348 (+)
G1433902 NA non-coding upstream 34012 27261299 ~ 27261857 (+)
G1433900 NA non-coding upstream 37477 27254885 ~ 27258392 (+)
G1433855 NA non-coding upstream 64465 27175512 ~ 27231404 (+)
G1433945 NA non-coding downstream 71693 27379705 ~ 27380286 (+)
G1433955 NA non-coding downstream 90641 27398653 ~ 27460368 (+)
G1433988 NA non-coding downstream 138229 27446241 ~ 27451970 (+)
G1434451 NA non-coding downstream 181748 27489760 ~ 27490153 (+)
LOC110493559 LOC106587120 other upstream 610228 26683052 ~ 26685644 (+)
G1432630 NA other upstream 1472606 25762966 ~ 25823263 (+)
LOC110493519 LOC106564707 other upstream 3430471 23701419 ~ 23866193 (+)
G1429776 NA other upstream 3848139 23447060 ~ 23447730 (+)
G1429775 NA other upstream 3848892 23446548 ~ 23446977 (+)
LOC118940374 LOC106587354 other downstream 229183 27534233 ~ 27540054 (+)
LOC110493581 LOC106564710 other downstream 235175 27543187 ~ 27547668 (+)
LOC118940376 LOC106564710 other downstream 245704 27549527 ~ 27555427 (+)
LOC110493582 LOC106564710 other downstream 290485 27595643 ~ 27602283 (+)

Expression

utp6(LOC106564653) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 30.
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utp6(LOC106564653) Expression in each Bioproject

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utp6(LOC106564653) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network