LOC110493580 (LOC106587357)


Basic Information

Item Value
gene id LOC110493580
gene name LOC106587357
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 27482749 ~ 27489409 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567933.2
GTTCGTTTTCAGACCGGTTTGGGGAGATTGCCTTTAAAATTGACCAATAGTGTCCACGAATACACTGCTTCCGGACGAAATTACTTGAGGACTGCCCCTGTGAACCTAGCTAGCAGTGATAGTCGAAGCCGTTTTGAATTACCACCGAGAAAATGGCAGAGAATGACGTTGACAACGAGCTGTTGGACTATGAAGAGGATGAGGAGCCTCAGGTTGCCCCGGAGACCACCACACCTGCGGGCAAGAAGGAGGTAAAGGGCTCTTATGTCTCCATCCACAGCTCCGGTTTCCGAGACTTCCTGCTCAAACCAGAGCTGCTCCGCGCCATTGTCGACTGTGGCTTTGAACATCCCTCTGAAGTCCAACACGAGTGCATCCCACAGGCCATCCTCGGCATGGACATCCTGTGCCAGGCCAAGTCGGGTATGGGCAAGACGGCTGTGTTTGTACTGGCCACCCTGCAGCAGATTGAACCTGTGGACGGGCAGgtGTCTGTGCTGGTGATGTGCCACACACGAGAGCTGGCCTTCCAGATCAGCAAAGAGTATGAGCGCTTCTCCAAGTACATGCCCACCGTCAAGGCGGCCGTGTTCTTCGGGGGCCTGTCCATCAAGAAGGACGAGGACGTGCTGAAGAAGAACTGCCCCCACATCGTGGTGGGTACGCCCGGCCGCATCCTGGCCCTCATCCGCAACAAGACCCTGAACCTGAAGAACGTGAAGCACTTTGTCCTGGATGAGTGTGACAAGATGCTGGAGCAGCTGGACATGAGACGTGATGTTCAGGACATCTTCAGGCTCACACCCCACGAGAAGCAGTGCATGATGTTCAGTGCCACCTTAAGCAAAGAGATTCGCCCTGTCTGCCGCAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGATGAGACCAAGCTGACGCTGCACGGTCTGCAGCAGTACTACTGCAAGCTGAAGGATAGCGAGAAGAACCGCAAGCTCTTCGACCTGCTCGATGTGCTTGAGTTCAACCAGGTGGTGATCTTTGTGAAGTCTGTGCAGCGCTGTGTGGCTCTGTCTCAGCTGCTGGTGGAGCAGAACTTCCCTGCAATCGCCATCCATAGGGGCATGGCCCAGGAGGAGAGGCTTTCCCGGTACCAGCAGTTCAAGGACTTCCAGAGGCGGATCCTGGTGGCCACCAACCTGTTTGGCCGAGGGATGGACATTGAGCGCGTCAACATAGTCTTCAACTACGACATGCCTGAGGACTCCGACACCTACCTGCACAGAGTGGCCCGTGCTGGCAGGTTCGGGACGAAAGGTCTGGCCGTGACCTTTGTGTCTGACGAGACCGACGCCAAGACCCTGAACGATGTGCAGGACCGCTTTGAGGTCAATGTGGCAGAGCTCCCAGAAGAGATTGACATCTCCACCTACATTGAACAGTCCAGATGAAAATCACCCCCTGACCAGTGAAGACGACGTGTGCATGCGTGcccctctgtccctgtctttttTTTGGAGATGGATAATAaaaaatgtcttttttttttaaagtaagcatcactttttatttgattttatccTCCCGAGGCTGCAGTTTTAATGTTATTTTCCCTGTTAATGGTTTTCTATTATTAGGTTAATAAAATAATTGAAATTAAAACTTTTTATACAATGTTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13182 DDX39; ATP-dependent RNA helicase DDX39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567933.2 True 1664 mRNA 0.52 9 27482749 27489409
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493578 LOC106564645 coding downstream 4165 27472675 ~ 27478584 (-)
LOC118940368 LOC106587336 coding downstream 11477 27460451 ~ 27471272 (-)
rab11fip4b LOC106564646 coding downstream 71193 27370922 ~ 27411556 (-)
LOC110493576 NA coding downstream 169169 27309904 ~ 27313580 (-)
LOC110495120 LOC106564652 coding downstream 187028 27282220 ~ 27295721 (-)
LOC110493585 LOC106564723 coding upstream 214937 27704346 ~ 27726825 (-)
LOC110495121 LOC106564724 coding upstream 238683 27728092 ~ 27786359 (-)
LOC110495154 NA coding upstream 302768 27792177 ~ 27793942 (-)
LOC110495122 LOC106588500 coding upstream 304701 27794110 ~ 27799359 (-)
LOC118940387 NA coding upstream 322557 27811966 ~ 27821870 (-)
G1434367 NA non-coding downstream 143868 27338317 ~ 27338881 (-)
G1434366 NA non-coding downstream 144477 27338002 ~ 27338272 (-)
G1434243 NA non-coding downstream 415232 27067300 ~ 27067517 (-)
G1434183 NA non-coding downstream 463626 26963905 ~ 27019123 (-)
G1434465 NA non-coding upstream 43892 27533301 ~ 27533578 (-)
G1434483 NA non-coding upstream 69315 27558724 ~ 27566878 (-)
G1434621 NA non-coding upstream 181793 27671202 ~ 27671742 (-)
G1434613 LOC106587368 non-coding upstream 192332 27681741 ~ 27688332 (-)
G1434640 NA non-coding upstream 213284 27702693 ~ 27703013 (-)
rhbdl3 LOC106564658 other downstream 253558 27175992 ~ 27229581 (-)
G1434287 NA other downstream 296297 27107417 ~ 27186452 (-)
G1434017 NA other downstream 763666 26698825 ~ 26719083 (-)
G1433327 NA other downstream 1252476 26225828 ~ 26230273 (-)
G1433142 LOC106586974 other downstream 1500188 25974382 ~ 25982561 (-)
G1434481 LOC106564710 other upstream 64314 27553723 ~ 27554443 (-)
LOC110493598 LOC104952775 other upstream 439748 27924167 ~ 27931058 (-)
LOC110495123 LOC106587585 other upstream 554866 28043251 ~ 28048026 (-)
G1435257 NA other upstream 691633 28181042 ~ 28182561 (-)
G1435199 LOC106587683 other upstream 699610 28189019 ~ 28200682 (-)

Expression

LOC110493580(LOC106587357) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
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LOC110493580(LOC106587357) Expression in each Bioproject

Bar chart with 21 bars.
LOC110493580(LOC106587357) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
End of interactive chart.

Co-expression Network