LOC110493581 (LOC106564710)


Basic Information

Item Value
gene id LOC110493581
gene name LOC106564710
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 27543187 ~ 27547668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948359.1
TAAAGTTACTCAAATGGAGACAACAGGTGGGTATTGGTGACACAGTGTTTATTTCTGATTATACAACTTCAATAGAATCTTTACGGTGGTCACTAGCTTGTTCGGTGGTAATTCTGATTGTCTTCTGTTTCAGAAACCCCAGGTCCCCTGACACCTAATGATGGGGAGATAatgatctcctctccatctgttgaTGACCTCCTGACCCCAAAGAGTGATGTGACGTCCGAGGCTAAGAGCGATGATGCCTCCTGTCCAATTTCACCTGAGGCGTTCTCTCTAACGAACTTCCTGAAGTCTCACCCTCAGAGAAAGCTTATCAGGAAGTTCCTCAAACAAATGAACGTGACAATAGGCGACCTGGACGAAATCATCGAGTGGGTGGTGTGTGTCTCCAGTGAGGTGTTCCTCCCAGTGATGGCTCTGCACAGGACCTCCAGACCAGAGTCGTCAGACTCGTCCCACTGGGGGTCAGGTGTGCTCCAGATCGTCTCTGAAAAGTTCCACCAGCGGAGTTCTGAGCCGAAGGGAAGGCTCCTGGGCGGACAGCCGCCCACTCCCCCTTCTGAGACCGACAAGGAGCTTCAGGGCATAGCAGATCTGTCTGTGAGTAACATCCTGAAAAGGGCCCAGGAGGACCTCTTCTCTTCTGGTGAGGATGACCTGGAGAACACCCATCCAGGTATTActctgacagaagagaagctctCCAGCATCTTCTCAGAGCTGTTCAGGGATGCCTGTGAGAGTGCCCAGGAGGCCGCCAGACGGATCCACCACATGAGGTCTGGAAGAGGCAACAACAGCCAGAATGGGAGTTGGCCTGGGTCGTCACAGGGATCGAGCAAATCCAACATGCCAGAGTTGGGAGAACTGGGGTCAGTGAGGAGTCCCAAGGGAAGTGAAGTCCATAAAGTCCTTAGCGAGGGGTCCCTCCCTGTCTTTGCCCTGTTTGAGGAGAGGCCAGGGGAAGTTGGGGAGACCAGCAGCCCTGCTGGGGAGATGGACGAGACACAGACTGCCAGCACTCCCAGCATTCCCCGGTCTGGGCATGGCGGCAGAAGGAGTAGCCAGACCACCACTCCCACCCCCGGCCACAGAGAGGCAGGATTCACAGCCAGTAACATCTTTGATGTTATTATTCATCTGGCGCACTCTGACACTGACCGGGAACTCCACCAGGAGTTCAGCAGTGAGGATGATGTTTCACTGAATGACATCATGGACATGAAGTCAACCCTGGCAGTGGAGCCCCTGGGTCAGATCCTGTCCTCATGGAAGCTGGTCAACATGATCTTCAGGGGGAAGGTCCACTACTTTGGGAAGGATCTCATCTGCAAGGTGTATCAGATGCTTCTGGACACCGGTATGGGCAGGAGGCCAATGGCCCGCCAGAGCAGGTCCGAGCCCATCCTGAAAGACCTGGCTGCCAACCGTAGGCTCTCCAATGAATTCTTCACAGACGTGCTGTACATGTTCATCCAACGGGCCATTAAGAATCTGCTGGAGAACTTCTTGGGTCTGCCGACCACCCCACCAGGCAGAGACATAATGTGGAATGACAACTTTAACTGGATGTATAGGGACGGCTGGGGGAACACCCCCACATCCAGCGAGGAGGAATTGTGGGACAGCGACTCCACCTGGTCAAGTGGGcatggggaggaggaagggacagagTCCCGTGGGAGGTGGGCCGCTCTGTTGGAGAAGGGCAGCTTACTGACCCTCCattcctccagctccctctccctctccgatgACAACAAGGAGGCACTAGGGGCCGTCTGCCAGGTCCTGACCACCAGGGTGGGAGACATCCTGAACAGTACCTGCAACGACGATTGCAAGGCCAGGCTCATCATCCAGAAAGGATTGGATTCCGGTGCCAGGGAAAGGTTCCCTGACTCTCCGTGTCCCTCTTCACCCAAGGACGAAGAGGAGGTGGTTGTGAGTGCCATGACTGTCTCATACCCTAAACCCTCCACCTCAACCCAGGCAGCATGGGCAGCTCCTGCCCAGACTATGGACGTTTTTCTGCCCAGACCATGCCTGGATGAAGAAGAGGTAGTGCCCAGCACCTCCTTGAAGGACAACTCTGTGACAACCACCCATGCAGCACTGGCAGCTCCTTCCCAGAGCCTGGAAGAAGAGGTGGGAGAAGCTGAGGTGTCCCACGTGAGTGAGAGCTCCCTGATGCCCACCAAGGCCATTGAGAAGATTCCCTCCCTCCTACCAGGCAAGATCCTTATCGAGGAGGACACCCTCAGTTGCAGCACTCCCTGGGCCACCGTCATGAGCCCCCAGACCCTGAAGTTCATCCTCCACGGCATCATGTGCCGACTGGAGACCTCAGAGTCCCCCCAGACAAGGAGGGCCAATGACCCCTTCAGGCTGATGAAGGATCTCTTTCTGGAGGTCCAGCATGCCCTGAAGTATGCTGACATCTCTGTCCTCTTTGGCCTGGAGGAGAGCATCCAATTCATTGGGGAGGATGCGGTGAAGGCCATCGTGAAGACTGCAGCTAAAAGATTGTCCCTGCGTTCGGACTCCAACCGGGCTCAACTGCGTGCCGCGCGCTCTGGTGGTGAGGCAGCCATCAGGCGCATGGCGGACACCATCACACAAGTCATAGATGACTATTCCGAGGACTGGAGTTCCGGTGGCCATTTTGGAGCCAGGAGGAGCCGTGCTAGTGGGAGGTCACACTCCTCAACCTCCTCAAGGAGTGACGTCACCCTCACCGAAGAGCTCTTGGCCCGGAGGGAATCCCTTGAAGAGGACCTAGCGGAGATGGCTGATGACAGCACTGGTTTGGAGAAGACCATTGTAAGCTCAGCCATCTCTGCCAAGTCCCAGgagaaggagaaggaagaggctATGAAGGAAGAAGTGAGGAAGTCAGGAAAGAAGAGGCGAAGAAATAAcaaggaccagaagaagaacaaggtGTCTCCTCTTGGCAATGATAGTACTGTGGCTGCAGATGAGCCGAAGAAAAAACAGTCTCTCCTCCCGCGGATCACAGCTGCCCTGGCAAgactattttgcttcccctgcaAAAAAAGATGCAAAAAGTAACTGCAGagacgagtttgggaaaccctgatacCACCTCCCCCAACCCACTTTCTAAAAAAACATCAGTGCCACCAGAAGAGGGAGACAACCCCCCCCTAACTAATTTTATTACCCCCCCATTTATTTAATAAACACAACT
>TU1642237
AAAAGGATATATGGTGGAAGGATCCACTATTATCTCCGACTCTCCTCTTTCTGTAGGTGTCCTGCCAGCTATCAAGAAGCGCACTAAAGTTACTCAAATGGAGACAACAGAAACCCCAGGTCCCCTGACACCTAATGATGGGGAGATAatgatctcctctccatctgttgaTGACCTCCTGACCCCAAAGAGTGATGTGACGTCCGAGGCTAAGAGCGATGATGCCTCCTGTCCAATTTCACCTGAGGCGTTCTCTCTAACGAACTTCCTGAAGTCTCACCCGTG
>TU1642238
GAACGTGACAATAGGCGACCTGGACGAAATCATCGAGTGGGTGGTGTGTGTCTCCAGTGAGGTGTTCCTCCCAGTGATGGCTCTGCACAGGACCTCCAGACCAGAGTCGTCAGACTCGTCCCACTGGGGGTCAGGTGTGCTCCAGATCGTCTCTGAAAAGTTCCACCAGCGGAGTTCTGAGCCGAAGGGAAGGCTCCTGGGCGGACAGCCGCCCACTCCCCCTTCTGAGACCGACAAGGAGCTTCAGGGCATAGCAG
>TU1642242
GGCTGCAGATGAGCCGAAGAAAAAACAGTCTCTCCTCCCGCGGATCACAGCTGCCCTGGCAAgactattttgcttcccctgcaAAAAAAGATGCAAAAAGTAACTGCAGagacgagtttgggaaaccctgatacCACCTCCCCCAACCCACTTTCTAAAAAAACATCAGTGCCACCAGAAGAGGGAGACAACCCCCCCCTAACTAATTTTATTACCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948359.1 False 3220 mRNA 0.55 7 27543271 27547668
TU1642237 False 285 TUCP 0.49 2 27543187 27543578
TU1642238 False 257 lncRNA 0.60 1 27543822 27544078
TU1642242 True 218 lncRNA 0.49 1 27547427 27547644
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118940374 LOC106587354 coding upstream 3217 27534233 ~ 27540054 (+)
LOC118940375 LOC106564710 coding upstream 9048 27527075 ~ 27534223 (+)
LOC118940373 LOC106587354 coding upstream 17294 27523481 ~ 27525977 (+)
LOC118940371 LOC106564710 coding upstream 24108 27513342 ~ 27519163 (+)
LOC118940372 LOC106564710 coding upstream 29939 27506322 ~ 27513332 (+)
LOC118940376 LOC106564710 coding downstream 1859 27549527 ~ 27555427 (+)
LOC118940378 LOC106564710 coding downstream 9675 27557343 ~ 27559064 (+)
LOC118940377 LOC106564710 coding downstream 11404 27559072 ~ 27563359 (+)
LOC118940379 LOC106564710 coding downstream 17362 27565030 ~ 27570925 (+)
LOC118940114 LOC106564710 coding downstream 25485 27573153 ~ 27578432 (+)
G1434466 NA non-coding upstream 8998 27533666 ~ 27534273 (+)
G1434457 NA non-coding upstream 39232 27496067 ~ 27504039 (+)
G1434451 NA non-coding upstream 53118 27489760 ~ 27490153 (+)
G1433955 NA non-coding upstream 82903 27398653 ~ 27460368 (+)
LOC118940380 LOC106564710 non-coding downstream 34902 27582169 ~ 27586415 (+)
LOC118940115 LOC106564710 non-coding downstream 46232 27587727 ~ 27594181 (+)
G1434489 LOC106564710 non-coding downstream 51151 27598819 ~ 27606732 (+)
G1434499 NA non-coding downstream 77448 27625116 ~ 27633062 (+)
LOC110493575 NA other upstream 210098 27313574 ~ 27333248 (+)
LOC110493559 LOC106587120 other upstream 857630 26683052 ~ 26685644 (+)
G1432630 NA other upstream 1720008 25762966 ~ 25823263 (+)
LOC110493519 LOC106564707 other upstream 3677873 23701419 ~ 23866193 (+)
LOC110493582 LOC106564710 other downstream 50829 27595643 ~ 27602283 (+)
G1434530 NA other downstream 170789 27718457 ~ 27718847 (+)
G1434906 NA other downstream 649028 28196696 ~ 28197581 (+)
G1435540 NA other downstream 1116686 28664354 ~ 28664979 (+)
LOC110493581 LOC106564710 other upstream 244 27543187 ~ 27547668 (+)
G1433988 NA non-coding upstream 91217 27446241 ~ 27451970 (+)

Expression

LOC110493581(LOC106564710) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC110493581(LOC106564710) Expression in each Bioproject

Bar chart with 12 bars.
LOC110493581(LOC106564710) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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Co-expression Network