LOC118940377 (LOC106564710)


Basic Information

Item Value
gene id LOC118940377
gene name LOC106564710
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 27559072 ~ 27563359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949532.1
AGTCTCACCCGTGAGTCCTGCTGTGAACCTCTATATGTGCAGAACAAATATAATCTATGTAAACACTAGTTTAAGTTGCCAATGATTCCTGGTGTTGGTTTGTTTTCCAGTCAGAGAAAGCTTATCAGGAAGTTCCTCAAACAAATGAACGTGACAATAGGCGACCTGGACGAAATCATCGAGTGGGTGGTGTGTGTCTCCAGTGAGGTGTTCCTCCCAGTGATGGCTCTGCACAGGACCTCCAGACCAGAGTCGTCAGACTCGTCCCACTGGGGGTCAGGTGTGCTCCAGATCGTCTCTGAAAAGTTCCACCAGCGGAGTTCTGAGCCGAAGGGAAGGCTCCTGGGCGGACAGCCGCCCACTCCCCCTTCTGAGACCGACAAGGAGCTTCAGGGCATAGCAGATCTGTCTGTGAGTAACATCCTGAAAAGGGCCCAGGAGGACCTCTTCTCTTCTGGTGAGGATGACCTGGAGAACACCCATCCAGGTATTActctgacagaagagaagctctCCAGCATCTTCTCAGAGCTGTTCAGGGATGCCTGTGAGAGTGCCCAGGAGGCCGCCAGACGGATCCACCACATGAGGTCTGGAAGAGGCAACAACAGCCAGAATGGGAGTTGGCCTGGGTCGTCACAGGGATCGAGCAAATCCAACATGCCAGAGTTGGGAGAACTGGGGTCAGTGAGGAGTCCCAAGGGAAGTGACGTCCATAAAGTTCTTAGCGAGGGGTCCCTCCCTGTCTTTGCCCTGTTTGAGGAGAGGCCAGGGGAAGTTGGGGAGACCAGCAGCCCTGCTGGGGAGATGGACGAGACACAGACTGCCAGCACTCCCAGCATTCCCCGGTCTGGGCATGGCGGCAGAAGGAGTAGCCAGACCACCACTCCCACCCCCGGCCACAGAGAGGCAGGATTCACAGCCAGTAACATCTTTGATGTTATTATTCATCTGGCGCACTCTGACACTGACCGGGAACTCCACCAGGAGTTCAGCAGTGAGGATGATGTTTCACTGAATGACATCATGGACATGAAGTCAACCCTGGCCCTGGGTCAGATCCTGTCCTCATGGAAGCTGGTCAACATGATCTTCAGGGGGAAGGTCCACTACTTTGGGAAGGAGCTCATCTGCAAGGTGTATCAGATGCTTCTGGACACCGGTATGGGCAGGAGGCCAATGGCCCGCCAGAGCAGGTCCGAGCCCATCCTGAAAGACCTGGCTGCCAACCGTAGGCTCTCCAATGAATTCTTCACAGACGTGCTGTACATGTTCATCCAACGGGCCATTAAGAATCTGCTGGAGAACTTCTTGGGTCTGCCGACCACCCCACCAGGTAGAGACATTATGTGGAATGACAACTTTAACTGGATGTATAGGGACGGCTGGGGGAACACCCCCACATCCAGCGAGGAGGAATTGTGGGACAGCGACTCCACCTGGTCAAGTGGGcatggggaggaggaagggacagagTCCCGTGGGAGGTGGGCCGCTCTGTTGGAGAAGGGCAGCTTACTGACCCTCCattcctccagctccctctccctctccgatgACAACAAGGAGGCACTAGGGGCCGTCTGCCAGGTCCTGACCACCAGGGTGGGAGACATCCTGAACAATACCTGCAACGACGATTGCAAGGCCAGGCTCATCATCCAGAAAGGATTGGATTCCGGTGCCAGGGAAAGGTTCCCTGACTCTCCGTGTCCCTCTTCACCCAAGGACGAAGAGGAGGTGGTTGTGAGTGCCATGACTGTCTCATACCCTAAACCCTCCACCTCAACCCAGGCAGCATGGGCAGCTCCTGCCCAGACTCTGGACGTTTTTCTGCCCAGACCATGCCTGGATGAAGAAGAGGTAGTGCCCAGCACCTCCTTGAAGGACAACTCTGTGACAACCACCCATGCAGCACTGGCAGCTCCTTCCCAGAGCCTGGAAGAAGAGGTGGGAGAAGCTGAGGTGTCCCACGTGAGTGAGAGCTCCCTGATGCCCACCAAGGCCATTGAGAAGATTCCCTCCCTCCTACCAGGCAAGATCCTTATCGAGGAGGACACCCTCAGTTGCAGCACTCCCTGGGCCACCGTCATGAGCCCCCAGACCCTGAAGTTCATCCTCCACGGCATCATGTGCCGACTGGAGGCCTCAGAGTCCCCCCAGACAAGGAGGGCCAATGACCCCTTCAGGCTGATGAAGGATCTCTTTCTGGAGGTCCAGCATGCCCTGAAGTATGCTGACATCTCTGTCCTCTTTGGCCTGGAGGAGAGCATCCAATTCATTGGGGAGGATGCGGTGAAGGCCATCGTGAAGACTGCAGCTAAAAGATTGTCCCTGCGTTCGGACTCCAACCGGGCTCAACTGCGTGCCGCGCGCTCTGGTGGTGAGGCAGCCATCAGGTGCATGGCGGACACCATCACACAAGTCATAGATGACTATTCCGAGGACTGGAGTTCCGGTGGCCATTTTGGAGCCAGGAGGAGCCGTGCTAGTGGGAGGTCACACTCCTCAACCTCCTCAAGGAGTGACGTCACCCTCACCGAGGAGCTCCTGGCCCGGAGGGAATCCCTTGAAGAGGACCTAGCGGAGATGGCTGATGACAGCACTGGTTTGGAGAAGACCATTGTAAGCTCAGCCATCTCTGCCAAGTCCCAGGTAATTAGCTACATTTCAGACAGCTCCGAGCCCAACAGCTGTGCCCTCTTCACAGACCTCGAGGACATCACCTCCACACATGTGAGACAGACAAGAACTAGTAGATTGTTTAGTTATTTGGGCTGTTTGATTGTGAGGCATCAACTcaaatctgtttctctctctacgaaggagaaggagaaggaagaggctATGAAGGAAGAAGTGAGGAAGTCAGGAAAGAAGAGGCGAAGAAATAAcaaggaccagaagaagaacaaggtGTCTCCTCTTGGCAATGATAGTACTGTGGCTGCAGATGAGCCGAAGAAAAAACAGTCTCTCCTCCCGCGGATCACAGCTGCCCTGGCAAgactattttgcttcccctgcaAAAAAAGATGCAAAAAGTAACTGCAGagacgagtttgggaaaccctgatacCACCTCCCCCAACCCACTTTCTAAAAAAACATCAGTGCCACCAGAAGAGGGAGACAACCCCCCCTAACTAATTTGATTACCCCCCCCATTTAATTTAATAAACACAACTTTCAGCTATTTTGATCttctttacttttttttttacagacccACCTGCATGCTATAGATTCGTAAGGTCAATTTGCTGTGTACTGTCTACAGTATCATTGTTATGAGTAGGTTCACTGTGTCAGtcattatttttacctttatttaactaggcaagttagtttagaacaaattcttattttcaatgacgacct
>XM_036949533.1
AGTCTCACCCGTGAGTCCTGCTGTGAACCTCTATATGTGCAGAACAAATATAATCTATGTAAACACTAGTTTAAGTTGCCAATGATTCCTGGTGTTGGTTTGTTTTCCAGTCAGAGAAAGCTTATCAGGAAGTTCCTCAAACAAATGAACGTGACAATAGGCGACCTGGACGAAATCATCGAGTGGGTGGTGTGTGTCTCCAGTGAGGTGTTCCTCCCAGTGATGGCTCTGCACAGGACCTCCAGACCAGAGTCGTCAGACTCGTCCCACTGGGGGTCAGGTGTGCTCCAGATCGTCTCTGAAAAGTTCCACCAGCGGAGTTCTGAGCCGAAGGGAAGGCTCCTGGGCGGACAGCCGCCCACTCCCCCTTCTGAGACCGACAAGGAGCTTCAGGGCATAGCAGATCTGTCTGTGAGTAACATCCTGAAAAGGGCCCAGGAGGACCTCTTCTCTTCTGGTGAGGATGACCTGGAGAACACCCATCCAGGTATTActctgacagaagagaagctctCCAGCATCTTCTCAGAGCTGTTCAGGGATGCCTGTGAGAGTGCCCAGGAGGCCGCCAGACGGATCCACCACATGAGGTCTGGAAGAGGCAACAACAGCCAGAATGGGAGTTGGCCTGGGTCGTCACAGGGATCGAGCAAATCCAACATGCCAGAGTTGGGAGAACTGGGGTCAGTGAGGAGTCCCAAGGGAAGTGACGTCCATAAAGTTCTTAGCGAGGGGTCCCTCCCTGTCTTTGCCCTGTTTGAGGAGAGGCCAGGGGAAGTTGGGGAGACCAGCAGCCCTGCTGGGGAGATGGACGAGACACAGACTGCCAGCACTCCCAGCATTCCCCGGTCTGGGCATGGCGGCAGAAGGAGTAGCCAGACCACCACTCCCACCCCCGGCCACAGAGAGGCAGGATTCACAGCCAGTAACATCTTTGATGTTATTATTCATCTGGCGCACTCTGACACTGACCGGGAACTCCACCAGGAGTTCAGCAGTGAGGATGATGTTTCACTGAATGACATCATGGACATGAAGTCAACCCTGGCCCTGGGTCAGATCCTGTCCTCATGGAAGCTGGTCAACATGATCTTCAGGGGGAAGGTCCACTACTTTGGGAAGGAGCTCATCTGCAAGGTGTATCAGATGCTTCTGGACACCGGTATGGGCAGGAGGCCAATGGCCCGCCAGAGCAGGTCCGAGCCCATCCTGAAAGACCTGGCTGCCAACCGTAGGCTCTCCAATGAATTCTTCACAGACGTGCTGTACATGTTCATCCAACGGGCCATTAAGAATCTGCTGGAGAACTTCTTGGGTCTGCCGACCACCCCACCAGGTAGAGACATTATGTGGAATGACAACTTTAACTGGATGTATAGGGACGGCTGGGGGAACACCCCCACATCCAGCGAGGAGGAATTGTGGGACAGCGACTCCACCTGGTCAAGTGGGcatggggaggaggaagggacagagTCCCGTGGGAGGTGGGCCGCTCTGTTGGAGAAGGGCAGCTTACTGACCCTCCattcctccagctccctctccctctccgatgACAACAAGGAGGCACTAGGGGCCGTCTGCCAGGTCCTGACCACCAGGGTGGGAGACATCCTGAACAATACCTGCAACGACGATTGCAAGGCCAGGCTCATCATCCAGAAAGGATTGGATTCCGGTGCCAGGGAAAGGTTCCCTGACTCTCCGTGTCCCTCTTCACCCAAGGACGAAGAGGAGGTGGTTGTGAGTGCCATGACTGTCTCATACCCTAAACCCTCCACCTCAACCCAGGCAGCATGGGCAGCTCCTGCCCAGACTCTGGACGTTTTTCTGCCCAGACCATGCCTGGATGAAGAAGAGGTAGTGCCCAGCACCTCCTTGAAGGACAACTCTGTGACAACCACCCATGCAGCACTGGCAGCTCCTTCCCAGAGCCTGGAAGAAGAGGTGGGAGAAGCTGAGGTGTCCCACGTGAGTGAGAGCTCCCTGATGCCCACCAAGGCCATTGAGAAGATTCCCTCCCTCCTACCAGGCAAGATCCTTATCGAGGAGGACACCCTCAGTTGCAGCACTCCCTGGGCCACCGTCATGAGCCCCCAGACCCTGAAGTTCATCCTCCACGGCATCATGTGCCGACTGGAGGCCTCAGAGTCCCCCCAGACAAGGAGGGCCAATGACCCCTTCAGGCTGATGAAGGATCTCTTTCTGGAGGTCCAGCATGCCCTGAAGTATGCTGACATCTCTGTCCTCTTTGGCCTGGAGGAGAGCATCCAATTCATTGGGGAGGATGCGGTGAAGGCCATCGTGAAGACTGCAGCTAAAAGATTGTCCCTGCGTTCGGACTCCAACCGGGCTCAACTGCGTGCCGCGCGCTCTGGTGGTGAGGCAGCCATCAGGTGCATGGCGGACACCATCACACAAGTCATAGATGACTATTCCGAGGACTGGAGTTCCGGTGGCCATTTTGGAGCCAGGAGGAGCCGTGCTAGTGGGAGGTCACACTCCTCAACCTCCTCAAGGAGTGACGTCACCCTCACCGAGGAGCTCCTGGCCCGGAGGGAATCCCTTGAAGAGGACCTAGCGGAGATGGCTGATGACAGCACTGGTTTGGAGAAGACCATTGTAAGCTCAGCCATCTCTGCCAAGTCCCAGgagaaggagaaggaagaggctATGAAGGAAGAAGTGAGGAAGTCAGGAAAGAAGAGGCGAAGAAATAAcaaggaccagaagaagaacaaggtGTCTCCTCTTGGCAATGATAGTACTGTGGCTGCAGATGAGCCGAAGAAAAAACAGTCTCTCCTCCCGCGGATCACAGCTGCCCTGGCAAgactattttgcttcccctgcaAAAAAAGATGCAAAAAGTAACTGCAGagacgagtttgggaaaccctgatacCACCTCCCCCAACCCACTTTCTAAAAAAACATCAGTGCCACCAGAAGAGGGAGACAACCCCCCCTAACTAATTTGATTACCCCCCCCATTTAATTTAATAAACACAACTTTCAGCTATTTTGATCttctttacttttttttttacagacccACCTGCATGCTATAGATTCGTAAGGTCAATTTGCTGTGTACTGTCTACAGTATCATTGTTATGAGTAGGTTCACTGTGTCAGtcattatttttacctttatttaactaggcaagttagtttagaacaaattcttattttcaatgacgacct

Function

NR:

description
uncharacterized protein LOC110493582

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949532.1 False 3381 mRNA 0.53 5 27559072 27563359
XM_036949533.1 True 3210 mRNA 0.54 6 27559072 27563359

Neighbor

gene id symbol gene type direction distance location
LOC118940378 LOC106564710 coding upstream 8 27557343 ~ 27559064 (+)
LOC118940376 LOC106564710 coding upstream 3645 27549527 ~ 27555427 (+)
LOC110493581 LOC106564710 coding upstream 11404 27543187 ~ 27547668 (+)
LOC118940374 LOC106587354 coding upstream 19018 27534233 ~ 27540054 (+)
LOC118940375 LOC106564710 coding upstream 24849 27527075 ~ 27534223 (+)
LOC118940379 LOC106564710 coding downstream 1671 27565030 ~ 27570925 (+)
LOC118940114 LOC106564710 coding downstream 9794 27573153 ~ 27578432 (+)
LOC118940380 LOC106564710 coding downstream 18810 27582169 ~ 27586415 (+)
LOC118940115 LOC106564710 coding downstream 24368 27587727 ~ 27594181 (+)
LOC110493582 LOC106564710 coding downstream 32284 27595643 ~ 27602283 (+)
G1434466 NA non-coding upstream 24799 27533666 ~ 27534273 (+)
LOC118940372 LOC106564710 non-coding upstream 47673 27506322 ~ 27513332 (+)
G1434457 NA non-coding upstream 55033 27496067 ~ 27504039 (+)
G1434489 LOC106564710 non-coding downstream 35460 27598819 ~ 27606732 (+)
G1434499 NA non-coding downstream 61757 27625116 ~ 27633062 (+)
G1434517 NA non-coding downstream 140998 27704357 ~ 27710413 (+)
LOC110493575 NA other upstream 225899 27313574 ~ 27333248 (+)
LOC110493559 LOC106587120 other upstream 873431 26683052 ~ 26685644 (+)
G1434530 NA other downstream 155098 27718457 ~ 27718847 (+)
G1434906 NA other downstream 633337 28196696 ~ 28197581 (+)
G1435540 NA other downstream 1100995 28664354 ~ 28664979 (+)
LOC110495133 LOC106564943 other downstream 1240458 28803282 ~ 28810516 (+)

Expression

LOC118940377(LOC106564710) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
End of interactive chart.

LOC118940377(LOC106564710) Expression in each Bioproject

Bar chart with 12 bars.
LOC118940377(LOC106564710) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.

Co-expression Network