LOC110493582 (LOC106564710)


Basic Information

Item Value
gene id LOC110493582
gene name LOC106564710
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 27595643 ~ 27602283 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949539.1
TTAAAAGTCCAACAGTGGGAGTGTGCAGCAGACTAATGATGGCGCGACTTTAATTCCTGACTATTTCAGTTATGGCCAACAGAGGGCAACATTTATCCATAAAATACGATTAAACCTCACTGAACCAAAGTGAATTGGGTTACACTGTAAACTTTATAGAGATTTCGTATGTGATCAGAAACGATGCATTCATTTCCCAGAGTGGTCGCACTGTGTTATTGTAGTTGACGTAATCGTGTACAATGGCATGACGTAATATATGAGCCTATGACTTAAACGCACTCAAGAGAAGGTTCAGTGCTTACTTCTGGCTCAGTTGAGTTGATGATTTACAAAGGAgagtcatcctcatgttcaaatAAATCACTTTGAGTGGACAAAGATGACATTCTGTGAGTACAGCAAAACGGGCCaagattttgtaaaaaaaaaaaattgaaatgtattttaaaatgtatttgtttataaAAAATGTCAGGTCCAATCTGAAGGGTGCCTGAAAGCACAATGGATAGAAATCATAAACGGTTGAGAATAATTCTTCAAAAAGTAAGTCTCATAAgtgattaaaaaaatgtttttgttaattCTGGGGCTTTCTCTCTTGATATGTAATGGGGCTATCTTCTTGGTAGTATAGCCTATATGCTGTAAAAACAGATTGACATGATTTATAGTTGGAAAAGTGGGCATAATAATGGAGGGCTTAAGTTAAATGTATTTCCTTATGATCCTGTACCCCAGGCTAGGACCCTCCAAGCTAGTGCTGGAGAGCAGGTGCTCCAGACAGACGTCATTTCTGCTGGCCATGATGGAGTAAGGCTGCCAGCCCTGGGAGACTGCCCCAAGGACAGCCCTCTAAAGGTAAGAAACAGCTTTTAGTTCTGATGCAAAACGTCTGGTTGTAACGGAGACCAGTTGGTTGTAATCTAGTAATATGATGTGTTGAAAACCAGTTTACAACGAGATAATAACACCATTAAGACACATGGACCACCTACTAGTTAGAACTAATAGTATTGGAATTCTGATTGTAAATATAAGGTTATGATTTATAGTTGGAAAAGTGGGCATAATAATGGAGGGCTTAAGTTAAATGTATTTCCTTATGATCCTGTACCCCAGGCTAGGACCCTCCAAGCTAGTGCTGGAGAGCAGGTGCTCCAGACAGACGTCCATTCTGCTGGCCATGATGGAGTAAGGCTGCCAGCCCTGGGAGACTGCCCCAAGGACAGCCCTCTAAAGGTAAGAAACAGCTTTTAGTTCTGATGCAAAACGTCTGGTTGTAACGGAGACCAGTTGGTTGTAATCTAGTAATATGACGGGTTGAAAACCAGTTTACAACGAGATAATAACACCATTAAGACACATGGACCACCTACTAGTTAGAACTAATAGTATTGGAATTCTGATTGTAAATATAAGGTTATGATTTATAGTTGGAAAAGTGGGCATAATAATGGAGGGCTTAAGTTAAATGTATTTCCTTATGATCCTGTACCCCAGGCTAGGACCCTCCAAGCTAGTGCTGGAGAGCAGGTGCTCCAGACAGACGTCCATTCTGCTGGCCATGATGGAGTAAGGCTGCCAGCCCTGGGAGACTGCCCCAAGGACAGCCCTCTAAAGGTGTCCTGCCAGCTATCAAGAAGGGCACTAAAGTTACTCAAATGGAGACAACAGAAACCCCAGGTCCCCTGACACCTAATGATGGGGAGATAatgatctcctctccatctgttgaTGACCTCCTGACCCCAAAGAGTGATGTGACGTCCGTGGCTAAGAGCGATGATGCCTCCTGTCCAATTTCACCTGAGGCGTTCTCTCTAACGAACTTCCTGAAGTCTCACCCTCAGAGAAAGCTTATCAGGAAGTTCCTCAAACAAATGAACGTGACAATAGGCGACCTGGACGAAATCATCGAGTGGGTGGTGTGTGTCTCCAGTGAGGTGTTCCTCCCAGTGATGGCTCTGCACAGGACCTCCAGACCAGAGTCGTCAGACTTGTCCCACTGGGGGTCAGGTGTGCTCCAGATCGTCTCTGAAAAGTTCCACCAGCGGAGTTCTGAGCCAAAGGGAAGGCTCCTGGGCGGACAGCCGCCCACTCCCCCTTCTGAGACCGACAAGGAGCTTCAGGGCATAGCAGATCTGTCTGTGAGTAACATCCTGAAAAGGGCCCAGGAGGACCTCTTCTCTTCTGGTGAGGATGACCTGGAGAACACCCATCCAGGTATTActctgacagaagagaagctctCCAGCATCTTCTCAGAGCTGTTCAGGGATGCCTGTGAGAGTGCCCAGGAGGCCGCCAGACGGATCCACCACATGAGGTCTGGAAGAGGCAACAACAGCCAGAATGGGAGTTGGCCTGGGTCGTCACAGGGATCGAGCAAATCCAACATGCCAGAGTTGGGAGAACTGGGGTCAGTGAGGAGTCCCAAGGGAAGTGACGTCCATAAAGTTCTTAGCGAGGGGTCCCTCCCTGTCTTTGCCCTGTTTGAGGAGAGGCCAGGGGAAGTTGGGGAGACCAGCAGCCCTGCTGGGGAGATGGACGAGACACAGACTGCCAGCACTCCCAGCATTCCCCGGTCTGGGCATGGCGGCAGAAGGAGTAGCCAGACCACCACTCCCACCCCCGGCCACAGAGAGGCAGGATTCACAGCCAGTAACATCTTTGATGTTATTATTCATCTGGCGCACTCTGACACTGACCGGGAACTCCACCAGGAGTTCAGCAGTGAGGATGATGTTTCACTGAATGACATCATGGACATGAAGTCAACCCTGGCCCTGGGTCAGATCCTGTCCTCATGGAAGCTGGTCAACATGATCTTCAGGGGGAAGGTCCACTACTTTGGGAAGGAGCTCATCTGCAAGGTGTATCAGATGCTTCTGGACACCGGTATGGGCAGGAGGCCAATGGCCCGCCAGAGCAGGTCCGAGCCCATCCTGAAAGACCTGGCTGCCAACCGTAGGCTCTCCAATGAATTCTTCACAGACGTGCTGTACATGTTCATCCAACGGGCCATTAAGAATCTGCTGGAGAACTTTTTGGGTCTGCCGACCACCCCACCAGGCAGAGACATAATGTGGAATGACAACTTTAACTGGATGTATAGGGACGGCTGGGGGAACACCCCCACATCCAGCGAGGAGGAATTGTGGGACAGCGACTCCACCTGGTCAAGTGGGcatggggaggaggaagggacagagTCCCGTGGGAGGTGGGCCGCTCTGTTGGAGAAGGGCAGCTTCCTgaccctccagtcctccagctccctctccctctccgatgACAACAAGGAGGCACTAGGGGCCGTCTGCCAAGTCCTGACCACCAGGGTGGGAGACATCCTGAACAGTACCTGCAACGACGATTGCAAGGCCAGGCTCATCATCCAGAAAGGATTGGATTCCGGTGCCAGGGAAAGGTTCCCTGACTTTCCGTGTCCCTCTTCACCCAAGGACGAAGAGGAGGTGGTTGTGAGTGCCATGACTGTCTCATACCCTAAACCCTCCACCTCAACCCAGGCAGCATGGGCAGCTCCTGCCCAGACTCTGGACGTTTTTCTGCCCAGACCCTGCCTGGATGAAGAAGAGGTAGTGCACAGCACCTCCTTGAAGGACAACTCTGTGACGACCACCCATGCAGCACTGGCAGCTCCTTCCCAGACCCTGGTAGAAGAGGTGGGAGAAGCTGAGGTGTCCAACGTGAGTGAGTGCTCCCTGATGCCCACCAAGGCCCTTGAGAAGATTCCCTCCCTCCTACCAGGCAAGATCCTTATCGAGGAGGACACCCTCAGTTGCAGCACTCCCTGGGCCACCGTCATGAGCCCCCAGACCCTGAGGTTTATCCTCCACGGCATCATGTGCCGACTGGAGGCCTCAGAGTCCCCCCAGACAAGGAGGGCCAATGACCCCTTCAGGCTGATGAAGGATCTCTTTCTGGAGGTCCAGCATGCCCTGAAGTATGCTGACATCTCTGTCCTCTTTGGCCTGGAGGAGAGCATCCAATTCATTGGGGAGGATGCGGTGAAGGCCATCGTGAAGACTGCAGCTAAAAGATTGTCCCTGCGTTCGGACTCCAACCGGGCTCAACTGCGTGCAGCGCGCTCTGGTGGTGAGGCAGCCATCAGGTGCATGGCGGACACCATCACACAAGTCATAGATGACTATTCCGAGGACTGGAGTTCCGGCGGCCATTTTGGAGCCAGGAGGAGCCGTGCTAGTGGGAGGTCACACTCCTCAACCTCCTCAAGGAGTGACGTCACCCTCACTGAGGAGCTCCTGGCCCGGAGGGAATCCCTTGAAGAGGACCTAGCGGAGATGGCTGATGACAGCACTGGTTTGGAGAAGACCATTGTAAGCTCAGCCATCTCTGCCAAGTCCCAGGATAAGGAAGAGGCTATGAACGAAGAAGTGAGGAAGTCAGGAAAGAAGAGGCGAAGAAATAAcaaggaccagaagaagaacaaggtGTCTCCTCTTGGCAATGATAGTACTGTGGCTGCAGATGAGCCGAAGAAAAAACAGGCTCTCCTCCCGCGGATCACAGCTGCCCTGGCAAgactattttgcttcccctgcaAAAAAAGATGCAAAAAGTAACTGTGCAGagacgagtttgggaaaccctgatacCACCTCCCCCAACCCACTTTCTAAAAAAACATCAGTGCCACCAGAAGAGGGAGACAACCCCCCCTATTCACAACTCATTTTATTACCCCCCCATTTAATTTAATAAACACAACTTTCAGCTA
>TU1642257
TCCTCCCAGTGATGGCTCTGCACAGGACCTCCAGACCAGAGTCGTCAGACTTGTCCCACTGGGGGTCAGGTGTGCTCCAGATCGTCTCTGAAAAGTTCCACCAGCGGAGTTCTGAGCCAAAGGGAAGGCTCCTGGGCGGACAGCCGCCCACTCCCCCTTCTGAGACCGACAAGGAGCTTCAGGGCATAGCAGATCTGTCTGTGAGTAACATCCTGAAAAGGGCCCAGGAGGACCTCTTCTCTTCTGGTGAGGATGACCTGGAGAACACCCATCCAGGTATTActctgacagaagag

Function

NR:

description
uncharacterized protein LOC110493582

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949539.1 False 4768 mRNA 0.50 9 27595643 27602283
TU1642257 True 296 TUCP 0.57 1 27598497 27598792
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118940115 LOC106564710 coding upstream 1487 27587727 ~ 27594181 (+)
LOC118940380 LOC106564710 coding upstream 9228 27582169 ~ 27586415 (+)
LOC118940114 LOC106564710 coding upstream 17211 27573153 ~ 27578432 (+)
LOC118940379 LOC106564710 coding upstream 24718 27565030 ~ 27570925 (+)
LOC118940377 LOC106564710 coding upstream 32284 27559072 ~ 27563359 (+)
LOC110515068 LOC106564710 coding downstream 2676 27604959 ~ 27610039 (+)
LOC118940381 LOC106564710 coding downstream 9282 27611565 ~ 27617748 (+)
LOC118940382 NA coding downstream 16954 27619237 ~ 27621203 (+)
LOC118940383 LOC106564710 coding downstream 18939 27621222 ~ 27625453 (+)
LOC118940384 NA coding downstream 24657 27626940 ~ 27628906 (+)
LOC118940376 LOC106564710 non-coding upstream 40241 27549527 ~ 27555427 (+)
LOC110493581 LOC106564710 non-coding upstream 47999 27543187 ~ 27547668 (+)
G1434466 NA non-coding upstream 61370 27533666 ~ 27534273 (+)
G1434499 NA non-coding downstream 22833 27625116 ~ 27633062 (+)
G1434517 NA non-coding downstream 102074 27704357 ~ 27710413 (+)
G1434539 NA non-coding downstream 124907 27727190 ~ 27729270 (+)
G1434695 NA non-coding downstream 204488 27806771 ~ 27807061 (+)
G1434711 NA non-coding downstream 219943 27822226 ~ 27822462 (+)
LOC118940374 LOC106587354 other upstream 58073 27534233 ~ 27540054 (+)
LOC110493575 NA other upstream 262470 27313574 ~ 27333248 (+)
LOC110493559 LOC106587120 other upstream 910002 26683052 ~ 26685644 (+)
G1434530 NA other downstream 116174 27718457 ~ 27718847 (+)
G1434906 NA other downstream 594413 28196696 ~ 28197581 (+)
G1435540 NA other downstream 1062071 28664354 ~ 28664979 (+)
LOC110495133 LOC106564943 other downstream 1201534 28803282 ~ 28810516 (+)
LOC110493649 LOC106588056 other downstream 1246639 28848883 ~ 28853257 (+)
G1434489 LOC106564710 non-coding downstream 27 27598819 ~ 27606732 (+)

Expression

LOC110493582(LOC106564710) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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LOC110493582(LOC106564710) Expression in each Bioproject

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LOC110493582(LOC106564710) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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Co-expression Network