LOC118940383 (LOC106564710)


Basic Information

Item Value
gene id LOC118940383
gene name LOC106564710
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 27621222 ~ 27625453 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949544.1
TCCAATTTCACCTGAGGCGTTCTCTCTAACGAACTTCCTGAAGTCTCACCCGTGAGTCCTGCTGTGAACCTCTATATGTGCAGAACAAATATAATCTATGTAAACACTAGTTTAAGTTGCCAATGATTcctggtgtttgtttgttttccagTCAGAGAAAGCTTATCAGGAAGTTCCTCAAACAAATGGTAAGTCCCGCATTTTTTCTGCTTTCAAGGGTGGAGTGATCATTGGAAACAACTATCTTGTAACATAAAAACTACTAGCTGTCAgattgttttctgtttctctttctaaGAACGTGACAATAGGCGACCTGGACGAAACCATCGAGTGGGTGGTGTGTGTCTCCAGTGAGGTGTTCCTCCCAGTGATGGCTCTGCACAGGACCTCCAGACCAGAGTCGTCAGACTCGTCCCGCTGGGGGTCAGGTGTGCTCCAGATCGTCTCTGAAAAGTTCCACCAGCGGAGTTCTGAGCCGAAGGGAAGGCTCCTGGGCGGGCAGCCGCCCACTCCCCCTTCTGAGACCGACAAGGAGCTTCAGGGCATAGCAGATCTGTCTGTGGGTAACATCCTGAAAAGGGCCCAGGAGGACCTCTTCTCTTCTGGTGAGGATGACCTGGAGAACACCCATCCAGGTATTActctgacagaagagaagctgtcCAGAATATTCTCAGAGCTGTTCAGGGATGCCTGTGAGAGTGCCCAGGAGGCCGCCAGACGGATCCACCACATGAGGTCTGGAAGAGGCAACAACAGCCAGAATGGGAGTTGGCCTGGGTCGTCACAGGGATCGAGCAAATCCAACATGCCAGAGTTGGGAGAACTGGGGTCAGTGAGGAGTCCCAAGGGAAGTGACGTCCATAAAGTCCTTAGCGAGGGGTCCCTCCCTGTCTTTGCCCTGTTTGAGGAGAGGCCAGGGGAAGTTGGGGAGACCAGCAGCCCTGCTGGGGAGATGGACGAGACACAGACTGCCAGCACTCCCAGCATTCCCCGGTCTGGGCATGGCGGCAGAAGGAGTAGCCAGACCACCACTCCCACCCCCGGCCACAGAGAGGCAGGATTCACAGCCAGTAACATCTTTGATGTTATTATTCATCTGGCGCACTCTGACACTGACCGGGAACTCCACCAGGAGTTCAGCAGTGAGGATGATGTTTCACTGAATGACATCATGGACATGAAGTCAACCCCGGCAGTGGAGCCCCTGGGTCAGATCCTGTCCTCATGGAAGCTGGTCAACATGATCTTCAGGGGGAAGGTCCACTACTTTGGGAAGGAGCTCATCTGCAAGGTGTATCAGATGCTTCTGGACACCGGTATGGGCAGGAGGCCAATGGCCCGCCAGAGCAGGTCCGAGCCCATCCTGAAAGACCTGGCTGACAACCGTAGGCTCTCCAATGAATTCTTCACAGACGTGCTGTACATGTTCATCCAACGGGCCATTAAGAATCTGCTGGAGAACTTCTTGGGTCTGCCGACCACCCCACCAGGCAGAGACATTATGTGGAATGACAACTTTAACTGGATGTATAGGGACGGCTGGGGGAACACCCCCACATCCAGCGAGGAGGAATTGTGGGACAGCGACTCCACCTGGTCAAGTGGGcatggggaggaggaagggacagagTCCCGTGGGAGGTGGGCCGCTCTGTTGGAGAAGGGCAGCTTCCTgaccctccagtcctccagctccctctccctctccgatgACAACAAGGAGGCACTAGGGGCCGTCTGCCAAGTCCTGACCACCAGGGTGGGAGACATCCTGAACAGTACCTGCAACGACGATTGCAAGGCCAGGCTCATCATCCAGAAAGGATTGGATTCCGGTGCCAGGGAAAGGTTCCCTGACTTTCCGTGTCCCTCTTCACCCAAGGACGAAGAGGAGGTGGTTGTGAGTGCCATGACTGTCTCATACCCTAAACCCTCCACCTCAACCCAGGCAGCATGGGCAGCTCCTGCCCAGACTCTGGATGTTTTTCTGCCCAGACCCTGCCTGGATGAAGAAGAGGTAGTGCCCAGCACCTCCTTGAAGGACAACTCTGTGACGACCACCCATGCAGCACTGGCAGCTCCTTCCCAGACCCTGGTAGAAGAGGTGGGAGAAGCTGAGGTGTCCAACGTGAGTGAGTGCTCCCTGATGCCCACCAAGGCCCTTGAGAAGATTCCCTCCCTCCTACCAGGCAAGATCCTTATCGAGGAGGACACCCTCAGTTGCAGCACTCCCTGGGCCACCGTCATGAGCCCCCAGACCCTGAAGTTTATCCTCCACGGCATCATGTGCCGACTGGAGGCCTCAGAGTCCCCCCAGACAAGGAGGGCCAATGACCCCTTCAGGCTGATGAAGGATCTCTTTCTGGAGGTCCAGCATGCCCTGAAGTATGCTGACATCTCTGTCCTCTTTGGCCTGGAGGAGAGCATCCAATTCATTGGGGAGGATGCGGTGAAGGCCATCGTGAAGACTGCAGCTAAAAGATTGTCCCTGCGTTCGGACTCCAACCGGGCTCAACTGCGTGCCGCGCGCTCTGGTGGTGAGGCAGCCATCAGGTGCATGGCGGACACCATCACACAAGTCATAGATGACTATTCCGAGGACTGGAGTTCCGGCGGCCATTTTGGAGCCAGGAGGAGCCGTGCTAGTGGGAGGTCATACTCCTCAACCTCCTCAAGGAGTGACGTCACCCTCACCGAGGAGCTCCTGGCCCGGAGGGAATCCCTTGAAGAGGACCTAGCGGAGATGGCTGATGACAGCACTGGTTTGGAGAAGACCATTGTAAGCTCAGCCATCTCTGCCAAGTCCCAGGAGAAGGATAAGGAAGAGGCTATGAAGGAAGAAGTGAGGAAGTCAGGAAAGAAGAGGCGAAGAAATAAcaaggaccagaagaagaacaaggtGTCTCCTCTTGGCAATGATAGTACTGTGGCTGCAGATGAGCCGAAGAAAAAACAGGCTCTCCTCCCGCGGATCACAGCTGCCCTGGCAAgactattttgcttcccctgcaAAAAAAGATGCAAAAAGTAACTGTGCAGagacgagtttgggaaaccctgatacCACCTCCCCCAACCCACTTTCTAAAAAAACATCAGTGCCACCAGAAGAGGGAGACAACCCCCCCCTATTCACAACTCATTTTATTACCCTCCCCCATTTAATTTAATAAACACAACTTTCAGCTATTTTGATCttctttacttttttttttacagacccACCTGCATGCTATAGATTTGTAAGGTCAATTTGC
>XM_036949543.1
TCCAATTTCACCTGAGGCGTTCTCTCTAACGAACTTCCTGAAGTCTCACCCGTGAGTCCTGCTGTGAACCTCTATATGTGCAGAACAAATATAATCTATGTAAACACTAGTTTAAGTTGCCAATGATTcctggtgtttgtttgttttccagTCAGAGAAAGCTTATCAGGAAGTTCCTCAAACAAATGGTAAGTCCCGCATTTTTTCTGCTTTCAAGGGTGGAGTGATCATTGGAAACAACTATCTTGTAACATAAAAACTACTAGCTGTCAgattgttttctgtttctctttctaaGAACGTGACAATAGGCGACCTGGACGAAACCATCGAGTGGGTGGTGTGTGTCTCCAGTGAGGTGTTCCTCCCAGTGATGGCTCTGCACAGGACCTCCAGACCAGAGTCGTCAGACTCGTCCCGCTGGGGGTCAGGTGTGCTCCAGATCGTCTCTGAAAAGTTCCACCAGCGGAGTTCTGAGCCGAAGGGAAGGCTCCTGGGCGGGCAGCCGCCCACTCCCCCTTCTGAGACCGACAAGGAGCTTCAGGGCATAGCAGATCTGTCTGTGGGTAACATCCTGAAAAGGGCCCAGGAGGACCTCTTCTCTTCTGGTGAGGATGACCTGGAGAACACCCATCCAGGTATTActctgacagaagagaagctgtcCAGAATATTCTCAGAGCTGTTCAGGGATGCCTGTGAGAGTGCCCAGGAGGCCGCCAGACGGATCCACCACATGAGGTCTGGAAGAGGCAACAACAGCCAGAATGGGAGTTGGCCTGGGTCGTCACAGGGATCGAGCAAATCCAACATGCCAGAGTTGGGAGAACTGGGGTCAGTGAGGAGTCCCAAGGGAAGTGACGTCCATAAAGTCCTTAGCGAGGGGTCCCTCCCTGTCTTTGCCCTGTTTGAGGAGAGGCCAGGGGAAGTTGGGGAGACCAGCAGCCCTGCTGGGGAGATGGACGAGACACAGACTGCCAGCACTCCCAGCATTCCCCGGTCTGGGCATGGCGGCAGAAGGAGTAGCCAGACCACCACTCCCACCCCCGGCCACAGAGAGGCAGGATTCACAGCCAGTAACATCTTTGATGTTATTATTCATCTGGCGCACTCTGACACTGACCGGGAACTCCACCAGGAGTTCAGCAGTGAGGATGATGTTTCACTGAATGACATCATGGACATGAAGTCAACCCCGGCAGTGGAGCCCCTGGGTCAGATCCTGTCCTCATGGAAGCTGGTCAACATGATCTTCAGGGGGAAGGTCCACTACTTTGGGAAGGAGCTCATCTGCAAGGTGTATCAGATGCTTCTGGACACCGGTATGGGCAGGAGGCCAATGGCCCGCCAGAGCAGGTCCGAGCCCATCCTGAAAGACCTGGCTGACAACCGTAGGCTCTCCAATGAATTCTTCACAGACGTGCTGTACATGTTCATCCAACGGGCCATTAAGAATCTGCTGGAGAACTTCTTGGGTCTGCCGACCACCCCACCAGGCAGAGACATTATGTGGAATGACAACTTTAACTGGATGTATAGGGACGGCTGGGGGAACACCCCCACATCCAGCGAGGAGGAATTGTGGGACAGCGACTCCACCTGGTCAAGTGGGcatggggaggaggaagggacagagTCCCGTGGGAGGTGGGCCGCTCTGTTGGAGAAGGGCAGCTTCCTgaccctccagtcctccagctccctctccctctccgatgACAACAAGGAGGCACTAGGGGCCGTCTGCCAAGTCCTGACCACCAGGGTGGGAGACATCCTGAACAGTACCTGCAACGACGATTGCAAGGCCAGGCTCATCATCCAGAAAGGATTGGATTCCGGTGCCAGGGAAAGGTTCCCTGACTTTCCGTGTCCCTCTTCACCCAAGGACGAAGAGGAGGTGGTTGTGAGTGCCATGACTGTCTCATACCCTAAACCCTCCACCTCAACCCAGGCAGCATGGGCAGCTCCTGCCCAGACTCTGGATGTTTTTCTGCCCAGACCCTGCCTGGATGAAGAAGAGGTAGTGCCCAGCACCTCCTTGAAGGACAACTCTGTGACGACCACCCATGCAGCACTGGCAGCTCCTTCCCAGACCCTGGTAGAAGAGGTGGGAGAAGCTGAGGTGTCCAACGTGAGTGAGTGCTCCCTGATGCCCACCAAGGCCCTTGAGAAGATTCCCTCCCTCCTACCAGGCAAGATCCTTATCGAGGAGGACACCCTCAGTTGCAGCACTCCCTGGGCCACCGTCATGAGCCCCCAGACCCTGAAGTTTATCCTCCACGGCATCATGTGCCGACTGGAGGCCTCAGAGTCCCCCCAGACAAGGAGGGCCAATGACCCCTTCAGGCTGATGAAGGATCTCTTTCTGGAGGTCCAGCATGCCCTGAAGTATGCTGACATCTCTGTCCTCTTTGGCCTGGAGGAGAGCATCCAATTCATTGGGGAGGATGCGGTGAAGGCCATCGTGAAGACTGCAGCTAAAAGATTGTCCCTGCGTTCGGACTCCAACCGGGCTCAACTGCGTGCCGCGCGCTCTGGTGGTGAGGCAGCCATCAGGTGCATGGCGGACACCATCACACAAGTCATAGATGACTATTCCGAGGACTGGAGTTCCGGCGGCCATTTTGGAGCCAGGAGGAGCCGTGCTAGTGGGAGGTCATACTCCTCAACCTCCTCAAGGAGTGACGTCACCCTCACCGAGGAGCTCCTGGCCCGGAGGGAATCCCTTGAAGAGGACCTAGCGGAGATGGCTGATGACAGCACTGGTTTGGAGAAGACCATTGTAAGCTCAGCCATCTCTGCCAAGTCCCAGGTAATTAGCTACATTTCTGAGAGCTCCGAGCCCAACAGCTGTGCCCTCTTCACAGACCTCGAGGACATCACCTCCACACATGTGAGACAGACAAGAACTAGTAGATCGTTTAGTTATTTGGGCTGTTTGATTGTGAGGCATCAACTcaaatctgtttctctctctacgaaGGAGAAGGATAAGGAAGAGGCTATGAAGGAAGAAGTGAGGAAGTCAGGAAAGAAGAGGCGAAGAAATAAcaaggaccagaagaagaacaaggtGTCTCCTCTTGGCAATGATAGTACTGTGGCTGCAGATGAGCCGAAGAAAAAACAGGCTCTCCTCCCGCGGATCACAGCTGCCCTGGCAAgactattttgcttcccctgcaAAAAAAGATGCAAAAAGTAACTGTGCAGagacgagtttgggaaaccctgatacCACCTCCCCCAACCCACTTTCTAAAAAAACATCAGTGCCACCAGAAGAGGGAGACAACCCCCCCCTATTCACAACTCATTTTATTACCCTCCCCCATTTAATTTAATAAACACAACTTTCAGCTATTTTGATCttctttacttttttttttacagacccACCTGCATGCTATAGATTTGTAAGGTCAATTTGCtg

Function

NR:

description
uncharacterized protein LOC110493582

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949544.1 False 3263 mRNA 0.54 5 27621222 27625451
XM_036949543.1 True 3436 mRNA 0.53 4 27621222 27625453

Neighbor

gene id symbol gene type direction distance location
LOC118940382 NA coding upstream 19 27619237 ~ 27621203 (+)
LOC118940381 LOC106564710 coding upstream 3474 27611565 ~ 27617748 (+)
LOC110515068 LOC106564710 coding upstream 11183 27604959 ~ 27610039 (+)
LOC110493582 LOC106564710 coding upstream 18939 27595643 ~ 27602283 (+)
LOC118940115 LOC106564710 coding upstream 27066 27587727 ~ 27594181 (+)
LOC118940384 NA coding downstream 1487 27626940 ~ 27628906 (+)
LOC118940386 LOC106564710 coding downstream 3472 27628925 ~ 27633163 (+)
LOC118940385 LOC106564710 coding downstream 8545 27633998 ~ 27640854 (+)
LOC110493584 LOC106564642 coding downstream 23552 27649005 ~ 27688362 (+)
LOC110493587 LOC106587379 coding downstream 63262 27688715 ~ 27695825 (+)
G1434489 LOC106564710 non-coding upstream 14490 27598819 ~ 27606732 (+)
LOC118940380 LOC106564710 non-coding upstream 38415 27582169 ~ 27586415 (+)
LOC118940376 LOC106564710 non-coding upstream 65820 27549527 ~ 27555427 (+)
LOC110493581 LOC106564710 non-coding upstream 73578 27543187 ~ 27547668 (+)
G1434517 NA non-coding downstream 78904 27704357 ~ 27710413 (+)
G1434539 NA non-coding downstream 101737 27727190 ~ 27729270 (+)
G1434695 NA non-coding downstream 181318 27806771 ~ 27807061 (+)
G1434711 NA non-coding downstream 196773 27822226 ~ 27822462 (+)
G1434712 NA non-coding downstream 197113 27822566 ~ 27822837 (+)
LOC118940374 LOC106587354 other upstream 83652 27534233 ~ 27540054 (+)
LOC110493575 NA other upstream 288049 27313574 ~ 27333248 (+)
G1434530 NA other downstream 93004 27718457 ~ 27718847 (+)
G1434906 NA other downstream 571243 28196696 ~ 28197581 (+)
G1435540 NA other downstream 1038901 28664354 ~ 28664979 (+)
LOC110495133 LOC106564943 other downstream 1178364 28803282 ~ 28810516 (+)
LOC110493649 LOC106588056 other downstream 1223469 28848883 ~ 28853257 (+)

Expression


Co-expression Network