LOC110493593 (LOC106564729)


Basic Information

Item Value
gene id LOC110493593
gene name LOC106564729
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 27867721 ~ 27871213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567953.2
TTGTTTGGCCACTAATTGTTACGAATAACCCCTTCAATTAAAATCAGCATTACACTATTACTGATTGTGAATTTATTGACTTTTGCAAGTAGCTAGTTGTAGTGTTTTGGTTGTCAGTAAACAGAAcacaaaatagttttttttgccATCACATTCAGGCAAGATAAGTCAATCGATCGATGACTGCAAGATGAGAGCAAGCTGCTATTTGATGGAAGGGGGGACATACGTGATGGGGTTGCTACGATAGGCAACGGGATATTTGTGataaaaaacaatcacattgCATAAATATAATCTCCTCAATAGCTGTAATTGACAACGAAGAATATCAGCACGATATGCAGTTATGAAGCGGGTACGCACGGAGCAGATCCAGTACACTGTAGCTCAGTACCTGAAGCGGAGGCAGTATGTGGACACTGAAAGTTCCCTGAAGGGGACTAAACTGTCCCAGTCCgcagaggagatggctgccaACCTCACAGTGCAGACAGAGTCGGGGTGTGCAAACATTGTCTCTGCTGCCCCTTGCCAAGCTGACCCTCAACAGTACGAGACCCAATTTTCCAGACTTCGCAATTTTCTTTCAGAAGCGGTGTTGCCATGGGGCCAGGAGGTGAGCTGCGTCCTGTACCCACTCTTCGTTTACCTCCACCTGGACATGGTGCGCTGCAGCCTGAAGGGGGTGGTGGATGGCTTCTACAGCCGCTTCCACAGCCTCTTCCTGGGGGACGCCGAGCAGCGCTCCACCGTGGAGCAGCTTCGCCATGTCCTCACCCAGCAGGATGTCACCGCAAACCCCAAGCTCCTGGCCTTACTCGACCACAAGTACGTGGTGAACCTGACGGAGCCGGCCTACAGTTACTTGTTACGCTACCTGCAGAGCGAAGACAACAGTACCCTCTGCAGGGCCCTCAGCACCCACATCCAGGTAGAGGTCACCTCCTCACCACGCACCGACTACCAGCTGTACGGGACGACGGGTGCGGGAGCTACCGGGGCCACCACCACGGCCCCCAACTCTACCTCCTCGTGGTCGGGTGCGGATGGCCCTGAGCGAGGAGAGGCGGCAGGGGTGGAGGTCCCCACAGGGATCCCGCAGAGCGAGGCGGCCCTGCAGGCACTGCAGGACTGCATTAAGAAGGTGCGTGAGGGGCCGCCGTCACTCACCACCGTGTGCTTCTATGCCTTCCAGCACACGGAACAGCTACTGAACACGGCAGTGGTGTCGGCTGACAGCAAGCTGCTGGCCGCCGGGTTCGACAGCTCGGCCGTCAAGCTATGGAGTCTTAGGGCCAGGAAACTGAAGGCCAGGCCACACCGGACCGACGTGTCACACATCCGCCTAGCATGTGACGTGCTGGAAGAAGAGGCAGATGAAGAGGACGGCTCGGGCAGCGAGATCAAGACCCTGCGTGGCCACAGCGGTCCGGTGTTCCGCACAGCCTTCCTGACAGACAGCTCGGGCCTGCTGTCCTGCTCGGAGGACACGTCCATTCGCTACTGGGACCTGGGTAGCTTCACCAACACGGCCCTCTACCAGGGTCACGCCTACCCCGTCTGGGACGTGGACGTCAGCCCCTGCAGCCTCTACTTTGCCAGCGCCTCCCACGACCGCACCGCCCGCCTCTGGACCTTCTCCAGGACCTACCCTCTGAGGCTCTACGCCGGCCACCTAGCGGACGTGGACTGCGTCAAGTTCCACCCCAACTCAAACTACCTGGCCACAGGCTCCACGGATAAAACCGTCCGCCTCTGGAGTACCCAGCAGGGGGCGTCAGTGCGCCTGTTCACAGGCCACCGCGGCCCCGTGTTGTCTGTAGCCTTCGCGCCCAATGGGAAGTACCTGGCATCGGCGGGCGAGGACCAACGGGTGAAGCTGTGGGACCTGGCCTCAGGGGCTCTGGTCAAGGACCTGAGGGGCCACACGGACAGTGTCACCAGCCTGTCGTTCAGCCCCGACAGCAGCCTGGTGGCCTCCTCTTCCATGGACAGCTCAGTCAGGGTGTGGGACATCCGAAACTCCCACAGCACGACCCACGCAGATGGCTCGTCCAGCGAGCTGGTGGGGCTCTACACAGGCAACACCAGCAACGTGCTCAACGTCCAGTTCATGGCCTGTAACTTGCTCCTGGTGACGGGAACAGCGCAGGAGAAACATGGACAGTAGCCATTTAGTTTTGTTTGGCCTGTCTGTTTAGTTTTGTTTAAAAGACTGTTGTGTCCATCTCAAACATGGTCACCATGGAGACATACATGTTTTCTTCCCTAAGCCAATCACAGAGAGGCTTAATTTCAGGCCAAAAGGTCACTTGCTAAAATTGCCCACTCAAGGTTGTTTTTGACAAGATCTCTGAGTAGAATAAGAGCTGTTAATCTGAA
>XM_021567954.2
TACATTTGTTTGGCCACTAATTGTTACGAATAACCCCTTCAATTAAAATCAGCATTACACTATTACTGATTGTGAATTTATTGACTTTTGCAAGTAGCTAGTTGTAGTGTTTTGGTTGTCAGTAAACAGAAcacaaaatagttttttttgccATCACATTCAGGCAAGATAAGTCAATCGATCGATGACTGCAAGATGAGAGCAAGCTGCTATTTGATGGAAGGGGGGACATACGTGATGGGGTTGCTACGATAGGCAACGGGATATTTGTGataaaaaacaatcacattgCATAAATATAATCTCCTCAATAGCTGTAATTGACAACGAAGAATATCAGCACGATATGCAGTTATGAAGCGGGTACGCACGGAGCAGATCCAGTACACTGTAGCTCAGTACCTGAAGCGGAGGCAGTATGTGGACACTGAAAGTTCCCTGAAGGGGACTAAACTGTCCCAGTCCgcagaggagatggctgccaACCTCACAGTGCAGACAGAGTCGGGGTGTGCAAACATTGTCTCTGCTGCCCCTTGCCAAGCTGACCCTCAACAGTACGAGACCCAATTTTCCAGACTTCGCAATTTTCTTTCAGCGGTGTTGCCATGGGGCCAGGAGGTGAGCTGCGTCCTGTACCCACTCTTCGTTTACCTCCACCTGGACATGGTGCGCTGCAGCCTGAAGGGGGTGGTGGATGGCTTCTACAGCCGCTTCCACAGCCTCTTCCTGGGGGACGCCGAGCAGCGCTCCACCGTGGAGCAGCTTCGCCATGTCCTCACCCAGCAGGATGTCACCGCAAACCCCAAGCTCCTGGCCTTACTCGACCACAAGTACGTGGTGAACCTGACGGAGCCGGCCTACAGTTACTTGTTACGCTACCTGCAGAGCGAAGACAACAGTACCCTCTGCAGGGCCCTCAGCACCCACATCCAGGTAGAGGTCACCTCCTCACCACGCACCGACTACCAGCTGTACGGGACGACGGGTGCGGGAGCTACCGGGGCCACCACCACGGCCCCCAACTCTACCTCCTCGTGGTCGGGTGCGGATGGCCCTGAGCGAGGAGAGGCGGCAGGGGTGGAGGTCCCCACAGGGATCCCGCAGAGCGAGGCGGCCCTGCAGGCACTGCAGGACTGCATTAAGAAGGTGCGTGAGGGGCCGCCGTCACTCACCACCGTGTGCTTCTATGCCTTCCAGCACACGGAACAGCTACTGAACACGGCAGTGGTGTCGGCTGACAGCAAGCTGCTGGCCGCCGGGTTCGACAGCTCGGCCGTCAAGCTATGGAGTCTTAGGGCCAGGAAACTGAAGGCCAGGCCACACCGGACCGACGTGTCACACATCCGCCTAGCATGTGACGTGCTGGAAGAAGAGGCAGATGAAGAGGACGGCTCGGGCAGCGAGATCAAGACCCTGCGTGGCCACAGCGGTCCGGTGTTCCGCACAGCCTTCCTGACAGACAGCTCGGGCCTGCTGTCCTGCTCGGAGGACACGTCCATTCGCTACTGGGACCTGGGTAGCTTCACCAACACGGCCCTCTACCAGGGTCACGCCTACCCCGTCTGGGACGTGGACGTCAGCCCCTGCAGCCTCTACTTTGCCAGCGCCTCCCACGACCGCACCGCCCGCCTCTGGACCTTCTCCAGGACCTACCCTCTGAGGCTCTACGCCGGCCACCTAGCGGACGTGGACTGCGTCAAGTTCCACCCCAACTCAAACTACCTGGCCACAGGCTCCACGGATAAAACCGTCCGCCTCTGGAGTACCCAGCAGGGGGCGTCAGTGCGCCTGTTCACAGGCCACCGCGGCCCCGTGTTGTCTGTAGCCTTCGCGCCCAATGGGAAGTACCTGGCATCGGCGGGCGAGGACCAACGGGTGAAGCTGTGGGACCTGGCCTCAGGGGCTCTGGTCAAGGACCTGAGGGGCCACACGGACAGTGTCACCAGCCTGTCGTTCAGCCCCGACAGCAGCCTGGTGGCCTCCTCTTCCATGGACAGCTCAGTCAGGGTGTGGGACATCCGAAACTCCCACAGCACGACCCACGCAGATGGCTCGTCCAGCGAGCTGGTGGGGCTCTACACAGGCAACACCAGCAACGTGCTCAACGTCCAGTTCATGGCCTGTAACTTGCTCCTGGTGACGGGAACAGCGCAGGAGAAACATGGACAGTAGCCATTTAGTTTTGTTTGGCCTGTCTGTTTAGTTTTGTTTAAAAGACTGTTGTGTCCATCTCAAACATGGTCACCATGGAGACATACATGTTTTCTTCCCTAAGCCAATCACAGAGAGGCTTAATTTCAGGCCAAAAGGTCACTTGCTAAAATTGCCCACTCAAGGTTGTTTTTGACAAGATCTCTGAGTAGAATAAGAGCTGTTAATCTGAA

Function

NR:

description
TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X2

GO: NA

KEGG:

id description
K03130 TAF5; transcription initiation factor TFIID subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567953.2 False 2385 mRNA 0.56 5 27867721 27871208
XM_021567954.2 True 2387 mRNA 0.56 5 27867721 27871213

Neighbor

gene id symbol gene type direction distance location
LOC110493592 LOC100136217 coding downstream 1057 27853050 ~ 27866664 (-)
LOC110493589 ltv1l coding downstream 16440 27842142 ~ 27851281 (-)
LOC118940387 NA coding downstream 45851 27811966 ~ 27821870 (-)
LOC110495122 LOC106588500 coding downstream 68362 27794110 ~ 27799359 (-)
LOC110495154 NA coding downstream 73779 27792177 ~ 27793942 (-)
LOC110493596 LOC106564731 coding upstream 35745 27906958 ~ 27909846 (-)
LOC110493598 LOC104952775 coding upstream 52954 27924167 ~ 27931058 (-)
LOC100136279 LOC106564733 coding upstream 60618 27931831 ~ 27952748 (-)
LOC110493601 LOC106587549 coding upstream 88732 27959945 ~ 27964756 (-)
LOC110493607 LOC106564737 coding upstream 144602 28015815 ~ 28029009 (-)
G1435066 NA non-coding downstream 29337 27835976 ~ 27838384 (-)
G1435080 NA non-coding downstream 33613 27833679 ~ 27834108 (-)
G1435076 NA non-coding downstream 36300 27831192 ~ 27831421 (-)
G1435071 NA non-coding downstream 41543 27825852 ~ 27826178 (-)
G1435069 NA non-coding downstream 44652 27822858 ~ 27823069 (-)
G1435091 act2 non-coding upstream 19789 27891002 ~ 27895276 (-)
G1435077 NA non-coding upstream 33600 27904813 ~ 27905491 (-)
G1435118 NA non-coding upstream 46155 27917368 ~ 27917849 (-)
G1435121 NA non-coding upstream 48962 27920175 ~ 27920481 (-)
G1435122 NA non-coding upstream 49482 27920695 ~ 27920897 (-)
G1434481 LOC106564710 other downstream 313278 27553723 ~ 27554443 (-)
rhbdl3 LOC106564658 other downstream 638530 27175992 ~ 27229581 (-)
G1434287 NA other downstream 681269 27107417 ~ 27186452 (-)
G1434017 NA other downstream 1148638 26698825 ~ 26719083 (-)
G1433327 NA other downstream 1637448 26225828 ~ 26230273 (-)
LOC110495123 LOC106587585 other upstream 173062 28043251 ~ 28048026 (-)
G1435257 NA other upstream 309829 28181042 ~ 28182561 (-)
G1435199 LOC106587683 other upstream 317806 28189019 ~ 28200682 (-)
LOC110493621 LOC106564766 other upstream 456917 28328130 ~ 28328877 (-)

Expression

LOC110493593(LOC106564729) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC110493593(LOC106564729) Expression in each Bioproject

Bar chart with 21 bars.
LOC110493593(LOC106564729) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network