LOC110493608 (LOC106564744)


Basic Information

Item Value
gene id LOC110493608
gene name LOC106564744
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28152333 ~ 28160242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949578.1
TGCGGAAGTGAGGGAGCGGGTGGGGCTTCGCTGggaaccggagagagagagagatagagatagggagagaaagagagagagagtggtcagaTTTGTGAGGCTTTTTATTCTAACAAATGAGACCGTATGTTTGACCCCGGGGTTCGCCTGCTTACAACAGCAAGCTGGATATATTTATGCGTGCACTCGCTCGGTCTTCGTTAGAATATAAATGGATGTCGTTTTTTTTTGTAGGCGCTTATCTGTGCGATAATGAAAGAACGCTTGAAATAGTTTATTCGCTTGTAGCCTATTTATGGTAGATAGCGCTTTGGCCCTTCTTTATTATAAGACAACGGGGATCCATCAAACGGCGGTAGCTATGTGAAGCGTAGAACTCGTTTATTCCCTTTCGTGAATTGAGGAATAATTATGAACAACGCGCAAGATATGTCTCCCGATTTTGTCTTGATGCGCCTGGTTTCCGCGGCCGAGGATGACCGCTTGGACGAGGAGAATGGGAATCTGTCGTCGGGTGGAGTGGTGGCAGGACTCGGTAAAGAGGTCTTGGCTCATAGCAACATGAAAGGGGGCTTGGAATTCGCCCGAGATCCCACGACAGGCCTCGCGCATTCCGGCAATCTCTCTTCGCTGAACGATGCACAGCAGAGCGGCGGAACGGCGGCACCTGACAGCCGGGTGATGGCGACTAAACCGTCGGTGTCTATTCCTCCTCCACACAGCGCCATGGAGGCCAAGGGCTTTGAGTTTGCTCACAGAGGCGGCTTACGGCCTCAGCTCCTTGTGTTTCCTAACATATTGAGGGATGGTGAGGGGATTTTAGAATGTGAATCCGAAGGTCGGAATCAGTCGAGGAAACATATTGGTTTGGACAAGACCTCCGGCTCTGTCTCCGACCTAACCGGAGGCATCAATAACAATACGCTCAGTGCCGGCGACGCGCAACAGCAGAACCATCTGTCCCAGAGCTGGGGTCTGCATCCCCGGGTGGTATTATCCACGGTTGCTGCAGATATCGAGGGAGGTGAGCTATGCCACCGGCACAGTTTGATCACCAACCCATCAGACTGGCCTCCCTTAAGGGATAAATCCAATCCTTTCACAATGATAGAGTCGAAATGGGGGTGCACAACCGGGGATCTGCCCGACGGCCCAGTGTTCGACCTGGCCAGAAGGTTCGGGGAGCTGGGGCTCGGCGCGGTACCCAAGATATTATTCAAGGACGGGGCGATGCCCCAGTGCTCGTGTCAGGGCGCACATGGTCCGGCACCAGCGGGGATGGGGCATGGGGATGACCCCACTGAGACTAGCGATGCTTTGTTGGTGCTAGAGGGGCTGGGGACTGGGGACGTGGCCAGGCTGGGTATCACTGGATGCCCAGAGGATGATTCGGATGAAAGTCGAGCACGTCGAGTTCAGAAGATGTCAGGTGCATTTTCTCTCAGTAGCTTTCAGGCAGAGTTGACCAGACAGATGGAAGGGGTGGCTGGAGAACCTTGTCCGTCGGCGCACGGTGACGCACAAGTATGTAGCCTGCATGGAAACGTACCTAACCCAACTCAACCGAGCCCGGGGGATACAGAACAGAATCCGGAGGTGTCGACATTACCTGCGGCTACACCGAGCTCGGACCGACCTGTCAGTCCAACCCCTAGCCAGGCATCTACACCCCGGAAGCGGGCAGACAAGTGCGTCAGTGAGCCCCGGACTCCAACCGGTCGGGTCGACAAAACACTCAAAGTTCCAGGGAAGTCCAGAAAGGGCTCACTTAAAATACGCCTGAGTAAACTTTTCAGAACTAAAAGCTGTAGTGGTTCCAATAGCCTTCTGGATAAGAGGCCATCAGTGGCCTATTCAATCTCCTCCGCTGGAAGTCTGATGGACATGGCCAGTGGAAGTGGTGGGGAGCATGACGTGGACAGCCAACCCCGAATGACCAGGGCCCAAAGTGCTTTCTCTCCTGCTTCCTTTGCTCCTTTCACTGGCGAGACTGTTTCATTGGTGGATGTGGATATTTCGAGGAGAGGGGCGAACACTCCGCACCCTCCCACGCCTCCACCTCCGCCACGCAGAAGTCTCAGTCTATTAGATGACATAGGTGGGCCGCAGCCTGGTCCTTTCCTAGTGAGTGTTATGGGGGCCTCCCTACAGTCCCTTCccctgcctcttcctcctcctcatccctcccatgCCACCATCCAGCATAGTATCAGCCTCAATGATGCATTCCTCCGGGCCCTGCCTCACTCCACCTCTTCACAGCTCCTCTCAGCTCCTCCCCCTTCCAGGTTGGCCCCGCCCCCAAGGCTCTGTCCTCTGAGGCGGCCTGAGGCCAGCAACTTCACCGCTAGTCTGAGAGAGCTGGAAAAATGTGGCTGGTATTGGGGTCCTATGAACTGGGAAGATGCAGAGATGAAGTTGAAGGGGAAGCCTGACGGGGCGTTCCTGGTGAGGGACAGCTCTGACCCCCGCTACATCCTCAGCCTCAGCTTCCGCTCCCAGGGAGTTACACACCACACGCGCATGGAGCACTATAGAGGGACATTCAGCTTGTGGTGTCATCCCAAGTTTGAGGACCGATGTCATTCTGTGGTGGAGTTTATCGAGCGAGCCATCATGCACTCCAAAAATGGAAAATTCCTCTACTTCCTGCGTTCACGTGTGCCAGggctCCCCCCTACCCCGGTGCAGCTGCTCTACCCAGTGTCCCGGTTCAGCAACGTCAAGTCCCTGCAGCACCTCTGTCGCTTCTGCATCCGACAAATGGTCCGCATCGACCACATCCAGGAGCTGCCGCTGCCCAAACCACTGATCATGTACCTGAGGAAGTTCTACTACTATGATGCAGAGGAAGAGATGTACCTGTCAATCAAGAGCATTCGACCAGGGGCTGGAGTAGAGAAAGAGGCGGAGTCTCAGACGTAACTGGAAGAGGTGTCTGCTGGTCTGCCAGTCTTCCAGCATCAGCCAATCAAAGTCCTCGGCACCCTCTGAATCCAGTCGGCTGCAGTCAAAGGGGTCCAGATTACCTAGCCCTTCTCTTGACTTTGGCCAATGAGAGTAGAAAGGGACAGTAGTGGAATGCTGGAAAATTGTCCATACGGAGTGCACACATGGGGCTGGGACAAAAAAGGACACAGCCTCATTGAGAACGGACTGGAGAACGGACTCTTCTAGCCTGTAACAAcctgaaaacaaaaaaaaacagcttgAACCTAGACTTTGAATCAAT
>XM_036949579.1
TGCGGAAGTGAGGGAGCGGGTGGGGCTTCGCTGggaaccggagagagagagagatagagatagggagagaaagagagagagagtggtcagaTTTGTGAGGCTTTTTATTCTAACAAATGAGACCGTATGTTTGACCCCGGGGTTCGCCTGCTTACAACAGCAAGCTGGATATATTTATGCGTGCACTCGCTCGGTCTTCGTTAGAATATAAATGGATGTCGTTTTTTTTTGTAGGCGCTTATCTGTGCGATAATGAAAGAACGCTTGAAATAGTTTATTCGCTTGTAGCCTATTTATGGTAGATAGCGCTTTGGCCCTTCTTTATTATAAGACAACGGGGATCCATCAAACGGCGGTAGCTATGTGAAGCGTAGAACTCGTTTATTCCCTTTCGTGAATTGAGGAATAATTATGAACAACGCGCAAGATATGTCTCCCGATTTTGTCTTGATGCGCCTGGTTTCCGCGGCCGAGGATGACCGCTTGGACGAGGAGAATGGGAATCTGTCGTCGGGTGGAGTGGTGGCAGGACTCGGTAAAGAGGTCTTGGCTCATAGCAACATGAAAGGGGGCTTGGAATTCGCCCGAGATCCCACGACAGGCCTCGCGCATTCCGGCAATCTCTCTTCGCTGAACGATGCACAGCAGAGCGGCGGAACGGCGGCACCTGACAGCCGGGTGATGGCGACTAAACCGTCGGTGTCTATTCCTCCTCCACACAGCGCCATGGAGGCCAAGGGCTTTGAGTTTGCTCACAGAGGCGGCTTACGGCCTCAGCTCCTTGTGTTTCCTAACATATTGAGGGATGGTGAGGGGATTTTAGAATGTGAATCCGAAGGTCGGAATCAGTCGAGGAAACATATTGGTTTGGACAAGACCTCCGGCTCTGTCTCCGACCTAACCGGAGGCATCAATAACAATACGCTCAGTGCCGGCGACGCGCAACAGCAGAACCATCTGTCCCAGAGCTGGGGTCTGCATCCCCGGGTGGTATTATCCACGGTTGCTGCAGATATCGAGGGAGGTGAGCTATGCCACCGGCACAGTTTGATCACCAACCCATCAGACTGGCCTCCCTTAAGGGATAAATCCAATCCTTTCACAATGATAGAGTCGAAATGGGGGTGCACAACCGGGGATCTGCCCGACGGCCCAGTGTTCGACCTGGCCAGAAGGTTCGGGGAGCTGGGGCTCGGCGCGGTACCCAAGATATTATTCAAGGACGGGGCGATGCCCCAGTGCTCGTGTCAGGGCGCACATGGTCCGGCACCAGCGGGGATGGGGCATGGGGATGACCCCACTGAGACTAGCGATGCTTTGTTGGTGCTAGAGGGGCTGGGGACTGGGGACGTGGCCAGGCTGGGTATCACTGGATGCCCAGAGGATGATTCGGATGAAAGTCGAGCACGTCGAGTTCAGAAGATGTCAGGTGCATTTTCTCTCAGTAGCTTTCAGGCAGAGTTGACCAGACAGATGGAAGGGGTGGCTGGAGAACCTTGTCCGTCGGCGCACGGTGACGCACAAGTATGTAGCCTGCATGGAAACGTACCTAACCCAACTCAACCGAGCCCGGGGGATACAGAACAGAATCCGGAGGTGTCGACATTACCTGCGGCTACACCGAGCTCGGACCGACCTGTCAGTCCAACCCCTAGCCAGGCATCTACACCCCGGAAGCGGGCAGACAAGTGCGTCAGTGAGCCCCGGACTCCAACCGGTCGGGTCGACAAAACACTCAAAGTTCCAGGGAAGTCCAGAAAGGGCTCACTTAAAATACGCCTGAGTAAACTTTTCAGAACTAAAAGCTGTAGTGGTTCCAATAGCCTTCTGGATAAGAGGCCATCAGTGGCCTATTCAATCTCCTCCGCTGGAAGTCTGATGGACATGGCCAGTGGAAGTGGTGGGGAGCATGACGTGGACAGCCAACCCCGAATGACCAGGGCCCAAAGTGCTTTCTCTCCTGCTTCCTTTGCTCCTTTCACTGGCGAGACTGTTTCATTGGTGGATGTGGATATTTCGAGGAGAGGGGCGAACACTCCGCACCCTCCCACGCCTCCACCTCCGCCACGCAGAAGTCTCAGTCTATTAGATGCATTCCTCCGGGCCCTGCCTCACTCCACCTCTTCACAGCTCCTCTCAGCTCCTCCCCCTTCCAGGTTGGCCCCGCCCCCAAGGCTCTGTCCTCTGAGGCGGCCTGAGGCCAGCAACTTCACCGCTAGTCTGAGAGAGCTGGAAAAATGTGGCTGGTATTGGGGTCCTATGAACTGGGAAGATGCAGAGATGAAGTTGAAGGGGAAGCCTGACGGGGCGTTCCTGGTGAGGGACAGCTCTGACCCCCGCTACATCCTCAGCCTCAGCTTCCGCTCCCAGGGAGTTACACACCACACGCGCATGGAGCACTATAGAGGGACATTCAGCTTGTGGTGTCATCCCAAGTTTGAGGACCGATGTCATTCTGTGGTGGAGTTTATCGAGCGAGCCATCATGCACTCCAAAAATGGAAAATTCCTCTACTTCCTGCGTTCACGTGTGCCAGggctCCCCCCTACCCCGGTGCAGCTGCTCTACCCAGTGTCCCGGTTCAGCAACGTCAAGTCCCTGCAGCACCTCTGTCGCTTCTGCATCCGACAAATGGTCCGCATCGACCACATCCAGGAGCTGCCGCTGCCCAAACCACTGATCATGTACCTGAGGAAGTTCTACTACTATGATGCAGAGGAAGAGATGTACCTGTCAATCAAGAGCATTCGACCAGGGGCTGGAGTAGAGAAAGAGGCGGAGTCTCAGACGTAACTGGAAGAGGTGTCTGCTGGTCTGCCAGTCTTCCAGCATCAGCCAATCAAAGTCCTCGGCACCCTCTGAATCCAGTCGGCTGCAGTCAAAGGGGTCCAGATTACCTAGCCCTTCTCTTGACTTTGGCCAATGAGAGTAGAAAGGGACAGTAGTGGAATGCTGGAAAATTGTCCATACGGAGTGCACACATGGGGCTGGGACAAAAAAGGACACAGCCTCATTGAGAACGGACTGGAGAACGGACTCTTCTAGCCTGTAACAAcctgaaaacaaaaaaaaacagcttgAACCTAGACTTTGAATCAAT

Function

NR:

description
PREDICTED: suppressor of cytokine signaling 7-like isoform X2

GO: NA

KEGG:

id description
K04699 SOCS6_7; suppressor of cytokine signaling 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949578.1 False 3232 mRNA 0.54 9 28152333 28160242
XM_036949579.1 True 3100 mRNA 0.54 8 28152333 28160242

Neighbor

gene id symbol gene type direction distance location
LOC110493609 LOC106564743 coding downstream 3850 28131026 ~ 28148483 (-)
LOC110493604 LOC106564741 coding downstream 33037 28095258 ~ 28119296 (-)
LOC110493615 LOC106564740 coding downstream 57510 28077558 ~ 28094823 (-)
LOC110493602 LOC106564761 coding downstream 85625 28052876 ~ 28066708 (-)
LOC118940388 NA coding downstream 99388 28048432 ~ 28052945 (-)
LOC110495125 NA coding upstream 28304 28188546 ~ 28194592 (-)
LOC110493620 LOC106587683 coding upstream 34180 28194422 ~ 28201620 (-)
LOC110495126 LOC106564751 coding upstream 94807 28255049 ~ 28286798 (-)
LOC110493621 LOC106564766 coding upstream 167896 28328130 ~ 28328877 (-)
LOC110495156 LOC106564766 coding upstream 206210 28366452 ~ 28369020 (-)
G1435189 NA non-coding downstream 80592 28071472 ~ 28071741 (-)
LOC110495123 LOC106587585 non-coding downstream 104332 28043251 ~ 28048026 (-)
G1435149 NA non-coding downstream 160002 27988179 ~ 27992331 (-)
G1435140 LOC100194684 non-coding downstream 165540 27978615 ~ 27986793 (-)
G1435270 NA non-coding upstream 64768 28225010 ~ 28227736 (-)
G1435289 NA non-coding upstream 89719 28249961 ~ 28250179 (-)
G1435290 NA non-coding upstream 91076 28251318 ~ 28251681 (-)
G1435245 NA non-coding upstream 92098 28252340 ~ 28252959 (-)
G1435244 NA non-coding upstream 93334 28253576 ~ 28254047 (-)
LOC110493598 LOC104952775 other downstream 221311 27924167 ~ 27931058 (-)
G1434481 LOC106564710 other downstream 597890 27553723 ~ 27554443 (-)
rhbdl3 LOC106564658 other downstream 923142 27175992 ~ 27229581 (-)
G1434287 NA other downstream 965881 27107417 ~ 27186452 (-)
G1435257 NA other upstream 20800 28181042 ~ 28182561 (-)
G1435199 LOC106587683 other upstream 28777 28189019 ~ 28200682 (-)
G1435467 NA other upstream 387031 28547273 ~ 28547556 (-)

Expression


Co-expression Network