LOC110493620 (LOC106587683)


Basic Information

Item Value
gene id LOC110493620
gene name LOC106587683
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28194422 ~ 28201620 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949588.1
AAAAATTCTCAAAAAATATAGCTATATGTTATGTAAAATATTTGACATAAATCATAATTGATAATTACATGCTTTCTGTTTGTGGCATTccttactagtagtagtagtagatagtAGCAGAAATAACAACAATGAATGAAATGATCTGCACTCTCTGAAAATAAGGAAGAATTTGCATCAACAACAGGTTGTTTACCTTGTTATGTTGTGAACGTTTTTATGGTTGCctagtagtgagtgtgtgtaaatCACTTATGGAAACCAGTAGTCAGAGGGCTTAGCTACTCACATGGCTCATGTAGGTCATTGCAGACATCTCTCTATCAACTATGTGTTGTTTGCTTAAGAATCCTACTGCTGCCAAGAAGACGTGCACTGCCATTGCAGGTGTTCGAAGTAGCTGCTGCTCAACTCTTCAGAACATGTCATGAAAAAGCAACCAATTTAATAGACAATTCCATCATCTAAACGCATGTAACTCTTTATTATCTGTGTCCAATGGCTAAGTAACTGGTATTGTAGCTTGCATCCATaagagccaatttatgcttgatccaaaAATGTGGTTGGATgtgtatggatggtgtgatgcaGTTGCGAAGCCAAGCATAAGTTGGCTCACACCATAAATGCTGCATGGCCTATGCAGACGTTGGAATGACCATGTTGCACAGAAGGTTAAATGTTGGGCCACACCTTGTAGACAAATCTTAGATTGTTGGTCTTCTGATCTATACATCTTTGATCTATAAACTAACAATAACTGAAAGCAGAGATTCTCAAGATAAAAAAAACCTAAACAGTAATAGTTTATTCTAAAATGCAGAGCAAGGTGGAATAGCCAAAGTGACCCCCAAAACGTTTCAAGAAGAATCGTAACAATGCGCAGCACAGCACAGGTTTATTGTTCTTGAACACACCTCAAACTGAGTCTGACAGCAGATATGGCGACGTCCATGAGAAGGGCATTAATGCCTCTGCATCGGATGAGATTCAGCAATTTGAAGAATGCAGAGGCTTCGCTGGAGGTACGGTATCCCCTGCCCTTTGTTGTCCCGATAAGGACCAAGAAGCGCTACTTCGTTCCCCCCGCAGTGGGGGTAAAAGGAAAGGCAGCAGCGTCGGCAGATCAGGAGGCAAAAGCCAGAGCGGCAGGTGTTGTCCTAAGGCAGGAGTACATGGAGAGAGACATCAACATCGCCTGCACTGCGGGAGTGTTTGACCCCTATATCCCCCCAGAAGGTGATGCTCGTCTCtccaGTCTGTCGAAAGAGGGCCTGAAACAGCGCACAGAGCAGATCAGTTAGCCTCCCAGCTAGCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949588.1 True 1321 mRNA 0.43 4 28194422 28201620

Neighbor

gene id symbol gene type direction distance location
LOC110493608 LOC106564744 coding downstream 34180 28152333 ~ 28160242 (-)
LOC110493609 LOC106564743 coding downstream 45939 28131026 ~ 28148483 (-)
LOC110493604 LOC106564741 coding downstream 75126 28095258 ~ 28119296 (-)
LOC110493615 LOC106564740 coding downstream 99599 28077558 ~ 28094823 (-)
LOC110493602 LOC106564761 coding downstream 127714 28052876 ~ 28066708 (-)
LOC110495126 LOC106564751 coding upstream 53429 28255049 ~ 28286798 (-)
LOC110493621 LOC106564766 coding upstream 126518 28328130 ~ 28328877 (-)
LOC110495156 LOC106564766 coding upstream 164832 28366452 ~ 28369020 (-)
LOC118936556 LOC106569433 coding upstream 185516 28387136 ~ 28389733 (-)
LOC110493625 LOC106569433 coding upstream 193003 28394623 ~ 28397235 (-)
G1435189 NA non-coding downstream 122681 28071472 ~ 28071741 (-)
LOC110495123 LOC106587585 non-coding downstream 146421 28043251 ~ 28048026 (-)
G1435149 NA non-coding downstream 202091 27988179 ~ 27992331 (-)
G1435140 LOC100194684 non-coding downstream 207629 27978615 ~ 27986793 (-)
G1435270 NA non-coding upstream 23390 28225010 ~ 28227736 (-)
G1435289 NA non-coding upstream 48341 28249961 ~ 28250179 (-)
G1435290 NA non-coding upstream 49698 28251318 ~ 28251681 (-)
G1435245 NA non-coding upstream 50720 28252340 ~ 28252959 (-)
G1435244 NA non-coding upstream 51956 28253576 ~ 28254047 (-)
G1435257 NA other downstream 11861 28181042 ~ 28182561 (-)
LOC110493598 LOC104952775 other downstream 263400 27924167 ~ 27931058 (-)
G1434481 LOC106564710 other downstream 639979 27553723 ~ 27554443 (-)
rhbdl3 LOC106564658 other downstream 965231 27175992 ~ 27229581 (-)
G1435467 NA other upstream 345653 28547273 ~ 28547556 (-)
G1436694 NA other upstream 1410632 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 1736706 29926378 ~ 29979179 (-)

Expression


Co-expression Network