LOC110495129


Basic Information

Item Value
gene id LOC110495129
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28496785 ~ 28521285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110495129
ATGAGTCGTCTGGAGCAGCAGAAGGATGCGGTCACTGACTCACACAGACACTTCAACAACCAACCCATTGTCACAGTCATCCAGATCCATTTGGCATCCAGGTCCAATACCAAGACTGTGCTGGAGATTGACAATGCCAAGCTTGCTTCTGAGGACTTCAAGATGAAGTATGCGAAAGAGCAGCCCATGAGGATGGCAGTGGAGGCAGACATCAGTGGTCTGAGGAGGGTCCTGGATGACATGAACCTGGGCCGCTCTGACCTGTAGATGCATTACGAGGGTCTGAAGGACGAGCTCATCATGCTCAAGAGGAGCCACCAGGAGATTGCCCCGGTGAAGACCCACGTGGGCAGCCAGGTGAATGTATCAGTGGATGCTGCCCCATCCCAGGACCTGAACGCAGCGATGACCGAGATTAGGAAGCAATACAAGTCTGTGGCCATCAAGAACCGCAAAGAGCTGGAAGCCTGGTACCAGGGCAAGCTGGCCACAGTGGAGCTTGAAGTCATGACAAACAATGAGCAGCTGAAATCCTCCCTGGAGGCCACGCTGGCAGACACCCAGAAACGCTACTCTGCTCAGCTGGCAGGGCTCCAGAGCATGGTGACTAGCCTGGAGCTCCAGCTCTCCCAGCTCCACGCCAACATCGCCCACAACAAGCAGGAGTACGACATGTTTGAACCTCAAGACCCGGCTGGAGATTGCAGAGAACAGGAGGCTGCTGGACGGAGAGGACGACAGCTCCACCCAAGGGGTTACCAAGATGATCACCGTGACCCAGACCATTGTGGATGGAAAGGTGATGGTTCTGTTAACAGAACCATCAATAAAGATTATGTGGTTGAATGAGAATGGGCTGTGTGGTTTCACTTGTTTCAGAGATATGAATGCTTTCTAATAGACTGACTATATGAATCTGTGAGTATGGATGTCATAGCAGATACATTTTGTGTTCTCATTTCATATGACTTGATTTCAATTCGACATCTTTCCACCAAAACATGGTGTCCAGCACTAGAGTTGACTCCACAAACACTCTccatacagtatataactctgaATCTAATGCTTGAAAAACTGACTGTTTGATTAATAGAGATAGAATGATGTAATTTTGCCGACAGCCAGTGTGGCGGCCCTgccactctgtctgccgaattctttctctttgctcgtTTTCCTTGGTAGGATGTCAGGgggcggagccgggagggtcgtcagcgagGTGGGACGCACCTGGGCTCGGGTGTGTCCCGGGGATAAGTACACCTTTCCCcgttcattgaggagactctctccacgcAGACACACTGTTAtttttggttgtggcattttgtggtttgtttgttttggcacctctcaacacccctcattttCACCATCTATGCAtgcaaccactcacttacactactgaatACTGACTACACACCCCGTTGTTACTTGTATATAGTTTTAGTTAAGAAATATTTAGTtaagaaatatatttttgtttttccttatctccacgttgtctccctcatgacttccaccgaaggtggttcctctccctgttctgtTGGTGCTCGGGGGTCggcgtcaccggcctactagccataaccgatccatgtttccttttccatttgttttgtctttggttcattcacacctggttttcatttgctTTAATTTATGTGTGTATATTTACCCCTGTTTCCCCGCTTAGGTTTGTGCGGGATAATTTTTCTTCTTGCTTGTGGAGGCTTTCCTCAGTGTATTTCGCGTGTGGTTATTATAGTAAGGTGCGTTGTGTTTTTGCGCCTTACGAGAATACTGTTACTTCCCATTGTTTTggggtattgtactgtactgtgtttttGGACTTGCCCTGATTAAAATATACTCTACA
>TU1643409
GCATGGGTGATAGCATGTATGCCAGGTCTCTCTGCATGTCGTTATTCTGACACCCATAAATACCTTACTGACATTTTGAACTTGGCAACATTCCCACCTCAAAACTTGTGCAACGGTTTAACATACTGTGGTAGCATATCATTGGACAAGGCACCAGTATACTAACTAGTCCGCTCCAGGGGGAAGTTTTCCCTAAGtaaagatctaggatcagcttcccctcccccaatcctaaacGTAACCATTACTGGGGAGAAATGCAAAACTAACCCAAGATCAGTGTCTTGGTGCTACTTCACTCTTCACCCACTCATCccttccactccctcctcccctgaTAGAAATCCTCCCTGGAGGCCACGCTGGCAGACACCCAGAAACGCTACTCTGCTCAGCTGGCAGGGCTCCAGAGCATGGTGACTAGCCTGGAGCTCCAGCTCTCCCAGCTCCACGCCAACATCGCCCACAACAAGCAGGAGTACGACATGTTTGAACCTCAAGACCCGGCTGGAGATTGCAGAGAACAGGAGGCTGCTGGACGGAGAGGACGACAGCTCCACCCAAGGGGTTACCAAGATGATCACCGTGACCCAGACCATTGTGGATGGAAAGGTGATGGTTCTGTTAACAGAACCATCAATAAAGATTATGTGGTTGAATGAGAATGGGCTGTGTGGTTTCACTTGTTTCAGAGATATGAATGCTTTCTAATAGACTGACTATATGAATCTGTGAGTATGGATGTCATAGCAGATACATTTTGTGTTCTCATTTCATATGACTTGATTTCAATTCGACATCTTTCCACCAAAACATGGTGTCCAGCACTAGAGTTGACTCCACAAACACTCTccatacagtatataactctgaATCTAATGCTTGAAAAACTGACTGTTTGATTAATAGAGATAGAATGATGTAATTTTGCCGACAGCCAGTGTGGCGGCCCTgccactctgtctgccgaattctttctctttgctcgtTTTCCTTGGTAGGATGTCAGGgggcggagccgggagggtcgtcagcgagGTGGGACGCACCTGGGCTCGGGTGTGTCCCGGGGATAAGTACACCTTTCCCcgttcattgaggagactctctccacgcAGACACACTGTTAtttttggttgtggcattttgtggtttgtttgttttggcacctctcaacacccctcattttCACCATCTATGCAtgcaaccactcacttacactactgaatACTGACTACACACCCCGTTGTTACTTGTATATAGTTTTAGTTAAGAAATATTTAGTtaagaaatatatttttgtttttccttatctccacgttgtctccctcatgacttccaccgaaggtggttcctctccctgttctgtTGGTGCTCGGGGGTCggcgtcaccggcctactagccataaccgatccatgtttccttttccatttgttttgtctttggttcattcacacctggttttcatttgctTTAATTTATGTGTGTATATTTACCCCTGTTTCCCCGCTTAGGTTTGTGCGGGATAATTTTTCTTCTTGCTTGTGGAGGCTTTCCTCAGTGTATTTCGCGTGTGGTTATTATAGTAAGGTGCGTTGTGTTTTTGCGCCTTACGAGAATACTGTTACTTCCC

Function

NR:

description
keratin, type I cytoskeletal 50 kDa-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110495129 False 1885 mRNA 0.46 7 28496785 28521285
TU1643409 True 1634 lncRNA 0.46 2 28496849 28498757

Neighbor

gene id symbol gene type direction distance location
LOC110493625 LOC106569433 coding downstream 99550 28394623 ~ 28397235 (-)
LOC118936556 LOC106569433 coding downstream 107052 28387136 ~ 28389733 (-)
LOC110495156 LOC106564766 coding downstream 127765 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 coding downstream 167911 28328130 ~ 28328877 (-)
LOC110495126 LOC106564751 coding downstream 209987 28255049 ~ 28286798 (-)
LOC110493627 LOC106564957 coding upstream 34269 28555554 ~ 28560692 (-)
LOC110493630 LOC106564955 coding upstream 89100 28610385 ~ 28622231 (-)
LOC101268960 LOC106564996 coding upstream 102955 28624240 ~ 28626947 (-)
LOC110493634 LOC106564954 coding upstream 115727 28637012 ~ 28645555 (-)
LOC110493635 LOC100194498 coding upstream 129719 28651004 ~ 28670920 (-)
G1435386 NA non-coding downstream 325 28486078 ~ 28496460 (-)
G1435388 LOC106564959 non-coding downstream 1103 28481275 ~ 28495682 (-)
G1435415 NA non-coding downstream 2877 28454183 ~ 28493908 (-)
G1435384 NA non-coding downstream 10209 28474302 ~ 28486576 (-)
G1435383 NA non-coding downstream 30047 28456493 ~ 28466738 (-)
G1435385 NA non-coding upstream 1455 28522740 ~ 28527066 (-)
G1435458 NA non-coding upstream 19279 28540564 ~ 28540783 (-)
G1435865 NA non-coding upstream 50196 28571481 ~ 28571806 (-)
G1435867 NA non-coding upstream 52552 28573837 ~ 28575219 (-)
G1435869 NA non-coding upstream 57168 28578453 ~ 28578685 (-)
G1435199 LOC106587683 other downstream 296103 28189019 ~ 28200682 (-)
G1435257 NA other downstream 314224 28181042 ~ 28182561 (-)
LOC110495123 LOC106587585 other downstream 448784 28043251 ~ 28048026 (-)
G1435467 NA other upstream 25988 28547273 ~ 28547556 (-)
G1436694 NA other upstream 1090967 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 1417041 29926378 ~ 29979179 (-)
G1437411 NA other upstream 1529317 30050602 ~ 30114123 (-)
G1437507 NA other upstream 1720165 30241450 ~ 30243706 (-)
G1435433 NA non-coding upstream 4940 28503697 ~ 28504230 (-)
G1435434 NA non-coding upstream 5547 28504304 ~ 28504823 (-)
G1435445 NA non-coding upstream 18942 28517699 ~ 28517973 (-)

Expression


Co-expression Network