XLOC_033245


Basic Information

Item Value
gene id XLOC_033245
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 56330271 ~ 56618557 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065255
AACAAAGGGCTGAATTTGTATTACTAGTGACATTTTCATCAATAGAAATGCATCTTCTGAAGGGTAATTTTGTAGCAACGTAAGTTAGCTTCATTGCTAACAAACTTGAACTACAATACATACAACTCCATTCTGGATTGCATTGAATCCTGAAAGTCAACACACTAGAGACGTAGAGctcatttttttcttcttgctgGCTGACCATGGCAGATAAGAGTCAGGACCCATCAGAGCCACTGGAGCGGCCGCCCGGCCGAGTGCCTGACCTAAATGCTTGAGTGCGCTTTAGCTGGCAGAGCCGGTCCGGCGGGCAGCAGAGGTGGACGAGGCTCTTCTACCTGCGTACTGAGAGTGTCTAAATTGCTTGCTTGTGAAGCGGTCAGACTGTCACTGATTCTCAGAGGACAGTGTTCTGGGATGGGAAACGCATGGAGAGAAAACTGCAGACGATAATGGTTTGACCGACCCGGATTACGGTGCGCTGGAAATATTGAGCCTCCCAGACCTACATCGTCGACCGCAAGTGTTCATTTTTCCACCAAACTACGCTAAAGTTGATTTATACACCCTGGGATAATTGGAAGCTCGAGTCAGCAAGGTCTTATGAGGTTATAAAGCCGCTCCATCATCAGTGTCCCTCTAATGGCTTTCAAATGTCCCGGCTGCTCCGACTCCAATTTTCACATCAATTTATTGCATGTAAACAAGCTGTCGAGTCAATGAACTGTGAAACTCCACCGTAAAAGAGCCGCTTTTACATCAGAGCGTGTGGAAATAGAAAGCGGCTCATGTAAATGCAGATGTGGGTTAGCCAGATACATGCTCATTTGCTTCGGCCACATGTGTTACTGTGAGTGCGGGACGGGGTGCGAGACCTCAGGAGACGCTAACAAGTTAATTTGTATGTTCCTCAAGTTTCCGCAAGAGATACGACTGGAGTCCCTCACCACATCTGACGGCTTGTAGGAAAGCTAAATTATGTGTCATTTGACGCAGAATATTCCCACGTCTTCTCGCTTCAGGAACTGGCCTTCGCATGAtgccgaaataaaagaaacatgAGGTCGAATTTAGAAtctttgatcatattttattttaacgtagaattcacactattaacaaattattaactAGCTCAATaaaatgtcataagacgttaatattaggttagatttaggttgtgatgttagATGGCTAAAACTTAATGTCTAGCCTAtatgtctaaggacaacgttattttgacttCCAATAACGGTCAAATGGCgttgattttagtttgtgttggaaagtgaccaaaatccaacgtcttaaaccaacgtcacgTTGACATCAAttgctgacatttattcatcaggtatgacaaccaaaacccaacatctgatagacatcataggggtaacgtccacacaacttcaagctgtacAATCTTTAGACATTGTTATTTGgctgtttttaggttgtgttggaaaatgaccaCATTATAACATCTGTCTGACGTTGGACACTGATGTCAGTCTGACATTGGGTTTATATGTAAATGTGTACCCATGCCATTTTATTAAGATATGCATGTTGTGCTTTTATTGTGCGACCAAATTGTATCgaacgtttaaaaaaaaatttaattactattagacttttgtaataaatgt
>TCONS_00064763
CAGGCACAGAATCATTGCAGCTTGTTCGTCTAATTGAATATTCAATAAGCGTTTAGGCCACTCGCCGAGGTGTGCATTGATTGAAAACATCCAATAAGCAGATTCCCTTCAGCTCGACCAGAGATATTCTCCTCTTCTCACTCTCAGACGCATCTCTGTCTCTCTTACAGAATCTGGCCTCCGgatctgtaaaaatattaagtaaataccGTCTTAAAAGAAAGTCTGCAAAAAACctcatttttttcttcttgctgGCTGACCATGGCAGATAAGAGTCAGGACCCATCAGAGCCACTGGAGCGGCCGCCCGGCCGAGTGCCTGACCTAAATGCTTGAGTGCGCTTTAGCTGGCAGAGCCGGTCCGGCGGGCAGCAGAGGTGGACGAGGCTCTTCTACCTGCG
>TCONS_00064764
CTGTGTTTCGGATCGTGACTTCCATCACTGCTGCAAACCCTGCTGGGAGATCCGTGAGGATGTTAGCTCATTGGTCAAGAACCTGCTGCTGTGCTGctcatttttttcttcttgctgGCTGACCATGGCAGATAAGAGTCAGGACCCATCAGAGCCACTGGAGCGGCCGCCCGGCCGAGTGCCTGACCTAAATGCTTGAGTGCGCTTTAGCTGGCAGAGCCGGTCCGGCGGGCAGCAGAGGTGGACGAGGCTCTTCTACCTGCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065255 False 1655 lncRNA 0.42 4 56330271 56567912
TCONS_00064763 False 404 lncRNA 0.49 2 56508611 56542766
TCONS_00064764 True 264 lncRNA 0.58 2 56508611 56618557

Neighbor

gene id symbol gene type direction distance location
XLOC_033244 gcnt7 coding downstream 218442 56097971 ~ 56111829 (-)
XLOC_033243 NA coding downstream 256345 56061721 ~ 56073926 (-)
XLOC_033242 NA coding downstream 291454 56009178 ~ 56038817 (-)
XLOC_033241 eya2 coding downstream 332921 55909795 ~ 55997350 (-)
XLOC_033240 cyp24a1 coding downstream 465584 55852274 ~ 55864687 (-)
XLOC_033248 cdh22 coding upstream 20131 56638688 ~ 56877366 (-)
XLOC_033249 NA coding upstream 336383 56954940 ~ 57108188 (-)
XLOC_033250 NA coding upstream 489768 57108325 ~ 57122910 (-)
XLOC_033251 CABZ01034962.1 coding upstream 644953 57263510 ~ 57263645 (-)
XLOC_033252 znfx1 coding upstream 782621 57401178 ~ 57426097 (-)
XLOC_033239 BX470154.1 non-coding downstream 502754 55814757 ~ 55827517 (-)
XLOC_033238 LO017956.1 non-coding downstream 680020 55650119 ~ 55650251 (-)
XLOC_033237 CR847793.1 non-coding downstream 774875 55555262 ~ 55555396 (-)
XLOC_033256 NA non-coding upstream 1002348 57620905 ~ 57621869 (-)
XLOC_033257 CU693502.1 non-coding upstream 1011857 57630414 ~ 57631164 (-)

Expression


Co-expression Network