LOC110493635 (LOC100194498)


Basic Information

Item Value
gene id LOC110493635
gene name LOC100194498
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28651004 ~ 28670920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949621.1
agagagagagaaagagcgagagcgcTTTAGCCTGGCATTTCTTCCCTGTGCCTTTCAGCTCCTCTCCCCCTGAAGAAGGAGGCGTGTCCATTGGCCAGCAGTATAAATTCCAAGAGGAACCACTCGTGTAGAGCCATTCTCAAGAGCAACCCATTGCCCTACACCCCATATGGAAGACGAAATTGCTACTCGACTTGAAAAACTTGATGCCCCTTCCCTACACCTGGACATTGGCAAACCACAGACTTTTCTCTTTGCACTATAAGAGGCTTCATGGGCTCTGTGTGAATTCTACTTGAAGGGACAAAGACTCACCTAAATAGACCAGTGGACATTTGTTCTACTTCCCAACAAATAACCACTTTGTGCGACTCAAAGACGTAAAGACTTTCGTCACATGGGAGAGCAAGGACTAGATATTTAGCATTCTTTGATCTACCTGCATTCTTTTTCTAACCTCCCAAACATCCTAGGGCTAGGAAATCGAGCCTAAGAAACGGCGAGGTAAAACAGCGGGGACATTGTGTTCCAACTCCTGCCAAAACCCCTGCCACCCGAAACACCAACCAGCGGGCAACATCAAAGACCAAACCCTCCAAccgcctccctcctcctccttacccTCCAAAACTAAAGCAGAGACCAAACAGTTGTGGGTGAGAGAGCAGAGAAACAGAAGGAATACTAACAAACGAACTGCGGGAAAGTGCAAGAGAAATCGAGGGCAAAGATTTGAGATCACGCCTTCGGGACTGCCATGGTGCGAGGTCGCGGTGCGGCTATAGCGCCGCCCTGCTGGGGCCTGTGGGCAGTGGGTGCCCTTTCGCTGGCGACCCTGTGTCTGACGGAGGAGGCCATCCGCTGCCCCGTGTGCTCTGAGGAGCGGCTGGCCAGCTGTCAGCTGCCTGATGGCAGCTGCGAAGAGACGGTGAGGGAGGCGGGCTGCGGCTGCTGCCCCACCTGCGCCCTGGCCAAGGGGGTGCACTGCGGCGTCTACTCGCCCCGCTGCGGCACGGGGCTCCGCTGCTACCCACCGCGGAACGTGGAGAGGCCCCTCCACTCACTCATGCATGGCCAGGGAGTGTGCAACGACGAGAGGGATGTGGAAGAGAACTCAGCGATGGACAGACAGGATGAGATCATCCCTGAGCACCCAAATAACAGTAACATCCGCTGCAGTCCCCAGGACAAACGCTGCATTCAGAAGACCCTGGCCCGCCACCCTGCCAAATCCACCAATCAGAGAAGCAATAACGCCAGggaggacccaaaggctgccctgGCTCCATGCCGTGCTGAGCTGCAGAGAGCGCTGGACCGACTGGTGTCTAACACTCGCACTCACGAGGATCTCTACAGCATCCCCATACCCAACTGTGACAAGAACGGAGACTTCCATGCCAAGCAGTGCCAGCCAGCACGTGACGGGCAGCGGGGAAAGTGCTGGTGTGTCGACCAGAAGACGGGCATGAGGCTGCCGGGGCCCCTGGAGCTGCGTGGGGAACTGGACTGCCACCAGCTAATGACTGCAACCatgagagagtgaggaggggacCGGCAGGGCCCCTGGGGGGCCAGGGCTAGGGCTTAGGGCCAGCCAAATTCTACTGGTGCTGTTTAGTTACAACTATGGAAGGAAAGGACTTAACCCTAAAGCCCCACTCCACGTGAGGCTAACGGTACTTGCTTGATATGAAAAAGATAAAAGGAAACCATAgaattttattattttattatcgtttgtttccgtgtgtgagtgtatgtctgTATGCATCTTTTTGAGCACATGTGTGTATTTTACGATTCTGTGAAGTTGGGAAGATGCTCTTGCTTTAAATAACAGGTGGCAAACAACAGGCCCCCAAATAAAAGTGTTGTAATCATTCTTCTCAAAACAGGACAACGTTGGTTTTGTATAGTTTAGTTGAACTCTGATTTCCATCTCTTAGCATCTTtgaaacaaaaaaacataaaaccttTTTGCATGAGTTAAGTGTCCTAACATGGCTCAACATCAACCATTCAGCAGCAGCTGTAGAAAATAATTAAtattgggagtgtgtgtgtgtgagagagagagagagagaattaccaATTGATGATAAGCCACAGCTTTTCACAACATTTGGAGACATGTAGTGAAAAGAGAGATTACTTTTGAAAGAATAAACTGTACCTCTGAGAGGAGCCCAGAATAGATGTGCTTTATCGctaccccccccccttctctccctcctctccgcttcccccccttctctttgactgggagctctctctctctctggcttatTTGTCCAGGGGGACTGGCATCATAGCTGGGCTCGGGACTCTGTACACTGCTGATAGGATAATCTTGTTTCTCCAGCTGGGGCTGAAGTACTAAGACGCCAGTGCTGCTGCTCTCATGTTTGTATGAATATGCTTCTATATACAGGATTTCTTTCCAACCAAGAGACTGCTTGTTGGCAGTATTGTGTAGTTTATAGTGGTGCTATACACTCATTGtgccaaaaatgtttttttttcttccccctgTGCTTTTTGAGGGGGATTGTTTCTTcagaaggagacagagatacaAACTCCCAGATGAGGGGGACAATCTTAGAATAGCCTAAATGTGTGACTGACCACAAATACTGTCTAGCTGTCACACAAATATCTCCAAGTTTTTATACTACATTGATGAAATAAAACATACAACTAAATACACAGATATCAGTGGGAGCATTACTATAGTTAACCGCCTGACTGTTTCATGGACTAATGTAGTGACTTTGCATGATTGTAGCATGTGTGGCTAGTGAAAACTCCTTACGGCTATAAGAGAAGAGGACTTAATGACTGCATGATGAAAAAACACGCTCTAGACATCCTTTGTAATTGCTAGCTAGTTGAAATGTTTGGAGAAACATCAGGTGTCTATATAATAACATTAGAAACCTTACAGAGAGATAGCATCATCGTCATACATGGACTCCCTCCAGTATAAATAAGTGAACACCCTTGACTTTTACTCTGGCAGAGCCAGTTATCAGGTTTGACATCATTGATGAAGCAAAGGAATCAttgatttgaattattatgttgacAAACTTACTAGTGCATCATACTCTACATATCTTCCACATACACTACGTGGACAAGACTGTTAACATCCCTACAGCGATTTGATTGTACTGTATTGCAAATGGGTGGAAAAGATCATGACTGGTTCCCTCAGAATATGATCTAtgatgtgattggttgattgactgaCTCAGGCTAAACCTGTGGAcgacagggaatacaggagagaAGACGACCCTTGAATACAGGACAGTCTGATCAGTGAGTTCAGTGAGGTCGGTCGTTTGTCATTTCTAGAAACGGATGGTGCACTTAATCCTCCCCTGAGAGAGTTGGGTTACTAATTGACTCCAGGAAGGATTCATCTCGACTGGACATTCATTATTGGTGTTAACAGTACACTGGCACAGTTAGCTTCATGTAGAGGCGAGGGACAGTGCCGAGGGGGTAAACCAGACGGACGGGGGCAACAGTTGTCCTGCTTCCTCTTTCAAGAACTGAAAGAAGAGTGCAGAACAGGTTGTCCGAAAACTGACTCCTACAAATGATAGGCAGCTCTTTTTGTCAGCAGAGATGTGAGTAGATAGACTAGAGGGAGAGGGAATAGAGACCGTGTGAGTGATAGAGCGCTAGAGAGTCCAAGCTACATTGGGATTGCACTGATTTGCTCTCACAAAGCCACATTGTGTCTGTAAGGCACACAACTTTTACcattcactctttctctcacacaccccTCTGGTTTGACAGAGGAGCCTAGAAGTCATTCAAGGCCTTTCCTCTGGCTGTTATCCAGAACAGCAGAACACATACTGTAGCAAGTCCAACTAAGCCCATCATAGCAACGCCCTTCATCATGGTTGTGCTGTCATTGCTACCTACCATGGGTAGTAAATGTTgggacagaaatatcttatttcaTTAGGCAACATTGAACATTCACACCTCCCAGCCTGGGGACAAAGTAGATAGAAAACCAGCTGTATTACATTGCCATTCAGAATCACAATATCAAAGACATTTGGGTCGATGTGTGACATGACCTGACATGAGCCGGGCCAAAGACAATTATTGCGGACTTAGCcaactgtactgtatctgtaacTTGCTTCcttgtataaaaatatatatatataataaaaaaactGCCAAAGTTATCCAAAGGATCTATGGGATATTGTATGTTAATACTGTTGTAGTTTACCTAGCAGTCCCTCAATCGATGACTTATCTTCTGAACTTATTACTAACCTGTAGACATTTACTTAACCTACATATGGTAAACTTTGACCTAAACTGTGACCAAACAGACAAACATCCCCGGTGGGCTGGTTGAACCGACATCCAGTTTTGCATGCTTCTGGGTCATTAACCTTGAAACGGAGCCTCTTGATGATCACTAATAGTTCATATTAGCTTTTTCTCCAATAGACAAGTCCCTAAAGTGTATTTTTGGCTCTCTGAGGCAATTCAATGAAACGGGATGCTCTTACTTTCCGCCACATTCCACCATGACATCCACTATTCCCCTAGACTACACAAGAGCAGTTCCACCCCAGCAGCACCCAATGAAAAGTCCATCTTCCAAAAGCTGGTCATATTTGAATTGTCATTGTAAAAATTCCTTGTTCTTAACCGTTATCACACATAATTTCAACAAAGCTACTGATGTCATTCCCAACTAGAAAGACATAGGAAATGGTATTAAGGAAGgaggatatactgtagctgatgAGTTGATTGTATTCCAAACACAATGAAGTGACATGAACAACGAAAGGCATCTCCAAAGATGTTATGAGCGAAGGTATTTTGAGGCATGAAACCCCAAAAACTATAGGAGTGCTTTGTGTACATTACATTGTATTCCCTTGTCATGTACTGAAGAACACTATACATAAGTCTAAGGCCTTATCTTTACAagcaggctgtcattgtaaataagaattggttcttaactgacttgcctagttaaataaaggtttaaaaagtCACATGGGTCATACAGAAGAACATTCCATTTCTGTGCTACTGTAGATATTATCTCTAGGTAAAATAGTGCTATGTTTCAAGTCAATGGTCCTGGTTTTCCTTTTGGATCCAAGACCTTCGGTGTTTCATTTACATTCAACTGTGTATACTTACACTATATTACTTGATCTCTATCTTTTGCTCTACTGTCTTTGTATTTCTGAAGGATATTCCTGTTTGCCTTGGACTTTACCTGTTAATTCTACTGTAAAAAGATTCAAAGTAACTTTTGCATGTGTAGCCTAGCTATATACTGGGTTTAAACATGTCAAGATCTTGTATGTGTGGTCCAGAACAGGGCCATGCTTTACAAACATTGAAGAACACGCAGCAAGAATTTGTGCTTATTATGGAATAATAATTTGGGTATTAGTAAAATGTTTACTCTATGAGAGAATTGTATACATTGTATTAGATCGAATGAAATCATAAACGTGTAGCATCTGA

Function

NR:

description
insulin-like growth factor-binding protein 4

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
K23576 IGFBP4; insulin-like growth factor-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949621.1 True 5547 mRNA 0.45 4 28651004 28670920

Neighbor

gene id symbol gene type direction distance location
LOC110493634 LOC106564954 coding downstream 5449 28637012 ~ 28645555 (-)
LOC101268960 LOC106564996 coding downstream 24057 28624240 ~ 28626947 (-)
LOC110493630 LOC106564955 coding downstream 28773 28610385 ~ 28622231 (-)
LOC110493627 LOC106564957 coding downstream 90312 28555554 ~ 28560692 (-)
LOC110495129 NA coding downstream 129719 28496785 ~ 28521285 (-)
LOC110493637 LOC106564949 coding upstream 71905 28742825 ~ 28748702 (-)
LOC110493640 LOC106564948 coding upstream 90860 28761780 ~ 28763712 (-)
LOC110493641 ccd49 coding upstream 93221 28764141 ~ 28768448 (-)
LOC110493642 LOC106564946 coding upstream 99375 28770295 ~ 28784724 (-)
LOC110493650 LOC106564939 coding upstream 174961 28845881 ~ 28848504 (-)
G1435869 NA non-coding downstream 72319 28578453 ~ 28578685 (-)
G1435867 NA non-coding downstream 75785 28573837 ~ 28575219 (-)
G1435865 NA non-coding downstream 79198 28571481 ~ 28571806 (-)
G1435458 NA non-coding downstream 110221 28540564 ~ 28540783 (-)
G1435385 NA non-coding downstream 123938 28522740 ~ 28527066 (-)
G1435905 LOC106564952 non-coding upstream 3554 28674474 ~ 28688486 (-)
G1435903 NA non-coding upstream 18051 28688971 ~ 28754020 (-)
G1435933 LOC106564951 non-coding upstream 33335 28704255 ~ 28774639 (-)
G1435935 NA non-coding upstream 37553 28708473 ~ 28709421 (-)
LOC110493648 LOC106564936 non-coding upstream 189042 28859182 ~ 28886611 (-)
G1435467 NA other downstream 103448 28547273 ~ 28547556 (-)
LOC110495156 LOC106564766 other downstream 283763 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 other downstream 322127 28328130 ~ 28328877 (-)
G1435199 LOC106587683 other downstream 450322 28189019 ~ 28200682 (-)
G1435257 NA other downstream 468443 28181042 ~ 28182561 (-)
G1436694 NA other upstream 941332 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 1267406 29926378 ~ 29979179 (-)
G1437411 NA other upstream 1379682 30050602 ~ 30114123 (-)
G1437507 NA other upstream 1570530 30241450 ~ 30243706 (-)
G1437609 NA other upstream 1796403 30467323 ~ 30468772 (-)

Expression


Co-expression Network