LOC110493637 (LOC106564949)


Basic Information

Item Value
gene id LOC110493637
gene name LOC106564949
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28742825 ~ 28748702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568022.2
CACGTGACCACAATGGGCGGTCCTCTGACtatgtgggggaaaaaaagccATTTTCTGGCGCTGCTGCAAAATCTAACGTTAACAGACTCAAAATAATTTACCTGTATCCACGTCGGGCGGTACTGGTGTTTTTCATGTCAAATCAGATCCTTCCAGATGGATAAAATGCAACCCAGTCGGCTAAAAATCACAGAGCTGAATCCTAATCTGATATGCCCACTGTGTGTGGGCTACTTCATCGATGCCACAACCATCGTGGAGTGCTTGCACTCATTCTGCAAGACGTGCATTGTTGCCTTCCTGGAAACCAACAAGTTCTGCCCCAGATGTGATGTGCAAGTGCACAAGACGTGTCCACAGCTCAGCATCAGGTCAGACAAGACTCTACAGGACATTGTATACAAGCTGGTGCCTGGATTATTCAAAGATGAGATGAAACGAAGGCGGGACTTCTACACAAACCAGGAAAACCAACACCTGGAGCCAGGAGAAGTGGTGGAGGAGCCAACTATTATTGCAGAAGATGAAATCATCAGTCTCTCCATTCAGTTCCATGAGAAGAACAAAAGTGACACACAACCTATGAATACAGAAGGAGACAATACCAACAGCAAACGCTTCCTGCAATGCCCGGCAGCCATGACCGTCCTGCACTTAGCCAAGTTCCTGCGTAGCAAGATGGACATTCCAAACACCTTACGGATTGAAGTGCTGTACGCTGATGAGCCCTTAAAGGACTACTACACGCTGATGGATATTGCCTACATGTATTCTTGGCGACGTAATGGCCCCCTCCCCCTGCAGTACTGGGTCAAGCCCACCCGGAAGCGTCGACGGCTGTCCCAAGGTGCCGCCCAGGCCCACTCCGACGGTGTCAACACAAGCCCCACCTCTGAGAGTGACTCCCACAGTGACAAAGCCCAGAGCCCGGCTGGTCAGGCCCCCAGAGCCTCCACCCTGCCCAGCCCTGCCCTCCGAGGCCAACCCTCTACCCTTCAGAGCCCCAGCGGTACCACAGGACCCAACGGTACTCAACGGCTCCCTCTAGCCTCCAAGTCAGGGAGCAACGCCCGCAAGGTGAATGTCAACGGCAAAAGCAATGGAGCGGCGACTGAGACTAGGGGAGGGGACAAAGGGGCTGTACCGCCACCAACCTAAATCTAATACATCCCAGAAACATGGAGAGTGGAACGGAATTGCCCCAAAATGTCGGAGTAGCCCCTCAATGGACCAATGGACAGACAAGGAGAAAATCTGCCAAGAGAGTACTAAGAGAGAGGGCGATTGTGATCAGCAAAAAGACTGTCAAGTGCAGCCAAATAGACATTTaatttcaatgtgtgtgtgtgactgtgtgttagaGTAAAACATACatacaaaatgtacaatatgtatcCAATGTGAGCATTCGTGCATACCTGGCTATGTATATAGAGTATCTTTTATACAGgatattgtaattgttttgtaACTGTATAATATGCAGTCGGTTCAACGATTCCTTCCCCCAATTCTTCAGAATTAATTTGGCTTTAAAATATCAATTTTGACAAAATGCTGAATGGCATTGCAAAGCCAATGTCCATAAATATTAACTAGAAATAAAAAAGCAAGATGTCTTCTTGCCGTCagtcatactgtatataataacTCTGGTGTATGTAGATAGATGCAGTACTTTCTACTGGTAATGGCCCCAATCACCAAGGACAATGGATATGTATGAAACGTTTGATGCACTTTCTTTGAAATGCAGATCACAGTATACTGAGTACTGAACTTCTCTGTGCTTTGACATTAGAAAAGCCATTATTTATCAAGCCCCAAGCAGCACTACAATTGTCTGAAAAAACGTAGCTTACCGTACATGTTTTTCAACATTACATACTGGTACCCGTTCTACTTACAGAGAAATTAGCTCAAAGGGAATTGTATATCTGACCATGTACACCATGTTGTATTTTCATACACTTTTGACATTCCCTCAATGTATATTTTGACCATCCAATGATATTATTCTAAAATATCAGCCATATGTGCATGTTTAGGTCATTAAAAAGTTCTTACTTGGT

Function

NR:

description
polycomb complex protein BMI-1-like

GO: NA

KEGG:

id description
K16277 DRIP; E3 ubiquitin-protein ligase DRIP

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568022.2 True 2072 mRNA 0.45 9 28742825 28748702

Neighbor

gene id symbol gene type direction distance location
LOC110493635 LOC100194498 coding downstream 71905 28651004 ~ 28670920 (-)
LOC110493634 LOC106564954 coding downstream 97270 28637012 ~ 28645555 (-)
LOC101268960 LOC106564996 coding downstream 115878 28624240 ~ 28626947 (-)
LOC110493630 LOC106564955 coding downstream 120594 28610385 ~ 28622231 (-)
LOC110493627 LOC106564957 coding downstream 182133 28555554 ~ 28560692 (-)
LOC110493640 LOC106564948 coding upstream 13078 28761780 ~ 28763712 (-)
LOC110493641 ccd49 coding upstream 15439 28764141 ~ 28768448 (-)
LOC110493642 LOC106564946 coding upstream 21593 28770295 ~ 28784724 (-)
LOC110493650 LOC106564939 coding upstream 97179 28845881 ~ 28848504 (-)
LOC110493648 LOC106564936 coding upstream 110480 28859182 ~ 28886611 (-)
G1435935 NA non-coding downstream 33404 28708473 ~ 28709421 (-)
G1435905 LOC106564952 non-coding downstream 54339 28674474 ~ 28688486 (-)
G1435869 NA non-coding downstream 164140 28578453 ~ 28578685 (-)
G1435867 NA non-coding downstream 167606 28573837 ~ 28575219 (-)
G1435865 NA non-coding downstream 171019 28571481 ~ 28571806 (-)
G1436041 NA non-coding upstream 179062 28927764 ~ 28928014 (-)
vig-2 NA non-coding upstream 187995 28936671 ~ 28939970 (-)
G1436056 NA non-coding upstream 208637 28957339 ~ 28957786 (-)
G1436104 NA non-coding upstream 310667 29059369 ~ 29059568 (-)
G1435467 NA other downstream 195269 28547273 ~ 28547556 (-)
LOC110495156 LOC106564766 other downstream 375584 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 other downstream 413948 28328130 ~ 28328877 (-)
G1435199 LOC106587683 other downstream 542143 28189019 ~ 28200682 (-)
G1435257 NA other downstream 560264 28181042 ~ 28182561 (-)
G1436694 NA other upstream 863550 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 1189624 29926378 ~ 29979179 (-)
G1437411 NA other upstream 1301900 30050602 ~ 30114123 (-)
G1437507 NA other upstream 1492748 30241450 ~ 30243706 (-)
G1437609 NA other upstream 1718621 30467323 ~ 30468772 (-)

Expression


Co-expression Network