LOC110493640 (LOC106564948)


Basic Information

Item Value
gene id LOC110493640
gene name LOC106564948
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28761780 ~ 28763712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568027.2
AGTACCGAATGACGTTTCAAACAGCAAGGGTGGCTGATTTCCGACTGTTCCAAATCGTGTAGTCACTGTGGGATTGTTATCCGCAGTCATTAAAAATAGTGAACATTTACAAGATATTTCAACGGCTAAGGAAGATACCTCAACGTATTCACAATGTCTATTATGTCCTATAATGGTGGTGCCGTCATGGCGATGAAGGGTAAGCAATGTGTAGCCATTGCAGCAGATCGAAGATTCGGTGTACAGGCTCAGATGGTGACCACAGACTTCCAGAAGATCTTTCCCATGGGAGACAGACTCTACATTGGCCTGGCTGGCCTGGCTACTGACGTACAGACAGTTTCCCAGAGGCTCAAGTTCAGATTGAACCTCTATGAGCTGAAGGAGGGGCGTCAGATCAAACCCAAGACATTCATGAGCATGGTCTCCAACCTGCTGTATGAGAGGAGATTTGGACCATACTACATTGAGCCTGTGATCGCTGGGCTGGACCCCAAGACCTTTGAGCCATTTATCTGCTCGCTGGACCTGATTGGCTGCCCCATGGTGACAGAGGACTTTGTTGTGAGCGGCACTTGCTCAGAGCAGATGTACGGCATGTGTGAATCTCTCTGGGAGCCAGACATGGAACCAGAGGACCTGTTTGAGACCATCTCCCAAGCCATGCTGAATGCAGTGGACAGGGATGCCGTTTCAGGCATGGGTGTCATTGTGCAAGTCATTGAGAAGGACAAGATCACCACACGTACCCTGAAGGCCAGAATGGATTAaagctcctctccctcatctctaccAACTCCTACTATTTTGTATGAAAATGATCAACACTGCGTGTACTGTTTTTCTTAAGATACTGTTCAATAAAATGAATGACTTGTAGTGTTACAATGA

Function

NR:

description
PREDICTED: proteasome subunit beta type-3-like

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02735 PSMB3; 20S proteasome subunit beta 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568027.2 True 891 mRNA 0.47 6 28761780 28763712

Neighbor

gene id symbol gene type direction distance location
LOC110493637 LOC106564949 coding downstream 13078 28742825 ~ 28748702 (-)
LOC110493635 LOC100194498 coding downstream 90860 28651004 ~ 28670920 (-)
LOC110493634 LOC106564954 coding downstream 116225 28637012 ~ 28645555 (-)
LOC101268960 LOC106564996 coding downstream 134833 28624240 ~ 28626947 (-)
LOC110493630 LOC106564955 coding downstream 139549 28610385 ~ 28622231 (-)
LOC110493641 ccd49 coding upstream 429 28764141 ~ 28768448 (-)
LOC110493642 LOC106564946 coding upstream 6583 28770295 ~ 28784724 (-)
LOC110493650 LOC106564939 coding upstream 82169 28845881 ~ 28848504 (-)
LOC110493648 LOC106564936 coding upstream 95470 28859182 ~ 28886611 (-)
LOC110493647 LOC106564936 coding upstream 134825 28898537 ~ 28922576 (-)
G1435903 NA non-coding downstream 7760 28688971 ~ 28754020 (-)
G1435935 NA non-coding downstream 52359 28708473 ~ 28709421 (-)
G1435905 LOC106564952 non-coding downstream 73294 28674474 ~ 28688486 (-)
G1435869 NA non-coding downstream 183095 28578453 ~ 28578685 (-)
G1435867 NA non-coding downstream 186561 28573837 ~ 28575219 (-)
G1436041 NA non-coding upstream 164052 28927764 ~ 28928014 (-)
vig-2 NA non-coding upstream 172985 28936671 ~ 28939970 (-)
G1436056 NA non-coding upstream 193627 28957339 ~ 28957786 (-)
G1436104 NA non-coding upstream 295657 29059369 ~ 29059568 (-)
G1435467 NA other downstream 214224 28547273 ~ 28547556 (-)
LOC110495156 LOC106564766 other downstream 394539 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 other downstream 432903 28328130 ~ 28328877 (-)
G1435199 LOC106587683 other downstream 561098 28189019 ~ 28200682 (-)
G1435257 NA other downstream 579219 28181042 ~ 28182561 (-)
G1436694 NA other upstream 848540 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 1174614 29926378 ~ 29979179 (-)
G1437411 NA other upstream 1286890 30050602 ~ 30114123 (-)
G1437507 NA other upstream 1477738 30241450 ~ 30243706 (-)
G1437609 NA other upstream 1703611 30467323 ~ 30468772 (-)

Expression


Co-expression Network