LOC110493641 (ccd49)


Basic Information

Item Value
gene id LOC110493641
gene name ccd49
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28764141 ~ 28768448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568029.2
agaagaagaagccaaagaagaagaagaagaagaacgcACTCTTAAACAACCAGACAAATAATCAGAAAGTCCGGAAGTACAAAGAAAACACAACACGCTAACTTAGCATGCAAATGCCGATGTTATTTAGATAATAACATAGATTTGTTTTGTCAGATACAATAACCACATAGGTAGAGGACACGTTTATTCATATCTTATTACTCAATCGGACGATCTAAGTCAAGATGGGAGGAGGTGACCTCAACTTGAAGAAGAGCTGGCATCCCCAGACTATGAAAAACATAGAGCGGGTGTGGAAGGCTGAACAGAAGCACGAGGCTGAGGCGAAGAAGATCGAGGAACTTCAGAAGGAGCTGAGAGAGGAACGAGCTCGAGAAGATATTACCAGATTCGCTCAGCAGACTGGGGCTCTAAAGAAAAAAGATGACCGGTTGGACTGGATGTACCAGGGGCCAGGTGGTCAGGTGTCCCGTGATGAGTACCTGCTGGGCCGCCCGATCGACAAGCAGATCACCCAGCAGTTTGAGGAGCCAGAGAGCGGTCCATCCGAACAAACCGGCCTGCTGCCTGGCTCAATCTTCAACCCCTCCACCCCTGCATCCAATCTCGACATGGCCGCCAAGATCAGAGAGGACCCGCTGTTTGATATCAAGAaacgggaggaggagaagaagagggaggtcTTGACAAACCCAGTGAAAATGAAGAAGATCAAAGAAATGCTGCGTCAGAATCTTGAAAAGAAAGACAAgaaaaagaagaggaagaaggacaagaaggagaaaagggaggagaaagagaggagaaaggagaagaagCATAAGAGAAGGAGCTTGAGCTCAAGCTCTGTGGACGAAGACAAAATACACAGGCACCATTCTAAAGAGGAATCCAAAGAAACAACCCACTCACATTCCCACCATCGCAGTGTCCCCACTGGCTATGGACTACAGTTTCCAGCTGGGAAGCATCATCAGTCCTCAAAGCCCACCAATCACTTAAGGCACCGTTCTCAGGAAAGGAGCCGCTCTCGATCGCCTCAAAGGACAGACTGGAACGGCCATCATTCCTCTCACAGGACAGACAACCACTCCTCTCACAAATCAGAGAACCACTCATCCCACAGGACAGACCAGTTTAAAGTTCCACAGTTCCAGCGCCCCAAAGCCCCCCCCAGCCCACAGAAAGATCGCTACCAAAGGCGTCAGAGCAGTACTACCAAATGTCTCTCTGCTGAAGAgttggagaagaagaggagggagatgatGGACTTTGCCAAACAGAGAGACGAAGAGCGCGAAAGCAACATTAGAAGTTACAAACGACAGGATGAACAGGAGAAGGagcgggagaaagagaaaggcgGCAAGCATGACCGCAACGCTGGCTTTATCCATAACATGAAGCTGGAGAGTGCCTCCACCTCTTCCTTGGAGGATCGAGTCAAGAGAAACATCCACTCCATACAGAGGACCCCCGCATCCCTGGAGAAGAATTTCATGAGGAGATGAGAACTAGAAGAAGCAGGAATGGGTTGATTGAGGAGAGAGTAAAAATATGCACCAGCTACCACACTGAAATATGTGCACCGGTTTGCCAGGACTGCCAACTCATTTATAATTTAATAAACAAAACAGACACTGCAGAGGCACCATGCATTTGTACTCGGGGCCCTGTGAAACTGCCCCTTAGCCATTGCCCTGACTAAAGCAATGCAAAGGATCTGACTTACTCTGTAATGGAAAAACTCACCCGTGCCATTCACCAGCAACAGCAAGCCATACTCACCTTTTATAGAATGAGCAATGTTGGATTTGTTTTTAAGTGGAAATTGTATATTGTGTTCTCTGTAATGTTTAGGATTATTCAAACTTTTATCAGACACAACCCTTTTGTAAATGATGTTTCTTGGAAATCTTTAGTGTATTGCTGTACCGGAGAAGAATTGTGGATCTTAATAAAACATTGTTCCTAGAGCTCTTTTGAGTTGGGGGCTAACAAACTAAATA
>XM_021568030.2
agaagaagaagccaaagaagaagaagaagaagaacgcACTCTTAAACAACCAGACAAATAATCAGAAAGTCCGGAAGTACAAAGAAAACACAACACGCTAACTTAGCATGCAAATGCCGATGTTATTTAGATAATAACATAGATTTGTTTTGTCAGATACAATAACCACATAGGTAGAGGACACGTTTATTCATATCTTATTACTCAATCGGACGATCTAAGTCAAGATGGGAGGAGGTGACCTCAACTTGAAGAAGAGCTGGCATCCCCAGACTATGAAAAACATAGAGCGGGTGTGGAAGGCTGAACAGAAGCACGAGGCTGAGGCGAAGAAGATCGAGGAACTTCAGAAGGAGCTGAGAGAGGAACGAGCTCGAGAAGATATTACCAGATTCGCTCAGCAGACTGGGGCTCTAAAGAAAAAAGATGACCGGTTGGACTGGATGTACCAGGGGCCAGGTGGTCAGGTGTCCCGTGATGAGTACCTGCTGGGCCGCCCGATCGACAAGCAGATCACCCAGCAGTTTGAGGAGCCAGAGAGCGGTCCATCCGAACAAACCGGCCTGCTGCCTGGCTCAATCTTCAACCCCTCCACCCCTGCATCCAATCTCGACATGGCCGCCAAGATCAGAGAGGACCCGCTGTTTGATATCAAGAaacgggaggaggagaagaagagggaggtcTTGACAAACCCAGTGAAAATGAAGAAGATCAAAGAAATGCTGCGTCAGAATCTTGAAAAGAAAGACAAgaaaaagaagaggaagaaggacaagaaggagaaaagggaggagaaagagaggagaaaggagaagaagCATAAGAGAAGGAGCTTGAGCTCAAGCTCTGTGGACGAAGACAAAATACACAGGCACCATTCTAAAGAGGAATCCAAAGAAACAACCCACTCACATTCCCACCATCGCAGTGTCCCCACTGGCTATGGACTACAGTTTCCAGCTGGGAAGCATCATCAGTCCTCAAAGCCCACCAATCACTTAAGGCACCGTTCTCAGGAAAGGAGCCGCTCTCGATCGCCTCAAAGGACAGACAACCACTCCTCTCACAAATCAGAGAACCACTCATCCCACAGGACAGACCAGTTTAAAGTTCCACAGTTCCAGCGCCCCAAAGCCCCCCCCAGCCCACAGAAAGATCGCTACCAAAGGCGTCAGAGCAGTACTACCAAATGTCTCTCTGCTGAAGAgttggagaagaagaggagggagatgatGGACTTTGCCAAACAGAGAGACGAAGAGCGCGAAAGCAACATTAGAAGTTACAAACGACAGGATGAACAGGAGAAGGagcgggagaaagagaaaggcgGCAAGCATGACCGCAACGCTGGCTTTATCCATAACATGAAGCTGGAGAGTGCCTCCACCTCTTCCTTGGAGGATCGAGTCAAGAGAAACATCCACTCCATACAGAGGACCCCCGCATCCCTGGAGAAGAATTTCATGAGGAGATGAGAACTAGAAGAAGCAGGAATGGGTTGATTGAGGAGAGAGTAAAAATATGCACCAGCTACCACACTGAAATATGTGCACCGGTTTGCCAGGACTGCCAACTCATTTATAATTTAATAAACAAAACAGACACTGCAGAGGCACCATGCATTTGTACTCGGGGCCCTGTGAAACTGCCCCTTAGCCATTGCCCTGACTAAAGCAATGCAAAGGATCTGACTTACTCTGTAATGGAAAAACTCACCCGTGCCATTCACCAGCAACAGCAAGCCATACTCACCTTTTATAGAATGAGCAATGTTGGATTTGTTTTTAAGTGGAAATTGTATATTGTGTTCTCTGTAATGTTTAGGATTATTCAAACTTTTATCAGACACAACCCTTTTGTAAATGATGTTTCTTGGAAATCTTTAGTGTATTGCTGTACCGGAGAAGAATTGTGGATCTTAATAAAACATTGTTCCTAGAGCTCTTTTGAGTTGGGGGCTAACAAACTAAATA

Function

NR:

description
pre-mRNA-splicing factor CWC25 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568029.2 False 2012 mRNA 0.46 9 28764141 28768448
XM_021568030.2 True 1979 mRNA 0.46 10 28764141 28768448

Neighbor

gene id symbol gene type direction distance location
LOC110493640 LOC106564948 coding downstream 429 28761780 ~ 28763712 (-)
LOC110493637 LOC106564949 coding downstream 15439 28742825 ~ 28748702 (-)
LOC110493635 LOC100194498 coding downstream 93221 28651004 ~ 28670920 (-)
LOC110493634 LOC106564954 coding downstream 118586 28637012 ~ 28645555 (-)
LOC101268960 LOC106564996 coding downstream 137194 28624240 ~ 28626947 (-)
LOC110493642 LOC106564946 coding upstream 1847 28770295 ~ 28784724 (-)
LOC110493650 LOC106564939 coding upstream 77433 28845881 ~ 28848504 (-)
LOC110493648 LOC106564936 coding upstream 90734 28859182 ~ 28886611 (-)
LOC110493647 LOC106564936 coding upstream 130089 28898537 ~ 28922576 (-)
vig-2 NA coding upstream 168223 28936671 ~ 28939970 (-)
G1435903 NA non-coding downstream 10121 28688971 ~ 28754020 (-)
G1435935 NA non-coding downstream 54720 28708473 ~ 28709421 (-)
G1435905 LOC106564952 non-coding downstream 75655 28674474 ~ 28688486 (-)
G1435869 NA non-coding downstream 185456 28578453 ~ 28578685 (-)
G1435867 NA non-coding downstream 188922 28573837 ~ 28575219 (-)
G1436041 NA non-coding upstream 159316 28927764 ~ 28928014 (-)
G1436056 NA non-coding upstream 188891 28957339 ~ 28957786 (-)
G1436104 NA non-coding upstream 290921 29059369 ~ 29059568 (-)
G1435467 NA other downstream 216585 28547273 ~ 28547556 (-)
LOC110495156 LOC106564766 other downstream 396900 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 other downstream 435264 28328130 ~ 28328877 (-)
G1435199 LOC106587683 other downstream 563459 28189019 ~ 28200682 (-)
G1435257 NA other downstream 581580 28181042 ~ 28182561 (-)
G1436694 NA other upstream 843804 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 1169878 29926378 ~ 29979179 (-)
G1437411 NA other upstream 1282154 30050602 ~ 30114123 (-)
G1437507 NA other upstream 1473002 30241450 ~ 30243706 (-)
G1437609 NA other upstream 1698875 30467323 ~ 30468772 (-)

Expression


Co-expression Network