LOC110493642 (LOC106564946)


Basic Information

Item Value
gene id LOC110493642
gene name LOC106564946
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28770295 ~ 28784724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949626.1
CCATTGAGTATGCTTACCTGTACGTGGAAGCGTTGTCTTGTCTCACCTGAACTGCTCGAGATGGAGGGAACTTTATGATATACCAGGATATCTATTTCTTTATtcgagttttttttattttaccaaagGCTTTTACTTGACTTCTGCCAaggtgatttatttattttcataccAGTGAATATAATAGGCTACAAAAATCTATTCGTACATCGCGTCGGAATAGAACTACGGGCACCATTGGATAAACAGGTCTGTAATCGTGGACAGAACCCTCAAGCTCTCCATCCAGCCATGTGGTAGTCTACACATCTTTACCCAGTTATCAGTCAGCCCACAACACCCCGGACCCACCCGGCTACCGCTCACTCCTCACCAgactcagccttcaacaccagtATCCCACAGACAGCAGCTGGTCTCATGGCCCACCCCTATGAACCCTGGTTACGGACAGCACCCCCTGGTGGCAGCTCAGACGAGATGAACGTTCCCTCATGGTGGGACCTCCACACCGGGCCAGGGAGCTGGATGGACCTGCAGGCGGGCCAGGGTGTGGGCTTACAGGCAGTTGGTCAGAGCTCCTTGGGGTTGCAGTCTTCCCTGGGGCCTTACGGCTCTGAGCCCCAGCTGTGTTCTTCTGCTCAGCTAGCCCAGCTGGCCCCAGCCTCACACTCAGCTCACTCTCACCTCTACCCCCAGGATGGCTTCAAGATGGAGCCGCTGGGAGGACCTGAGCTCCTGCAGCCGGAGTCATACTCCCTGGAGGAGCCACAGGAGGGTGCCACCTCGGTCCGGCCCAAGCCCCAGCGCCGCTCTGCCTCCAGGGGCTCGGGCCAGTCTGTGTGCCGGTGCCCCAACTGTGTCCATGCCGAGCAGATGGGCCAGAGCACTGATGACGACCGGAGGAAACACATGCACAACTGCCACATCCCGGGCTGCGGCAAGGCCTACGCCAAGACCTCTCACCTGAAGGCCCACCTGCGCTGGCACAGCGGGGACCGGCCCTTCGTCTGCAACTGGCTCTTCTGCGGCAAGCGCTTCACACGCTCCGACGAACTTCAGCGACACCTGCAGACACACACCGGTGCCAAGAAGTTCAGCTGCACCATGTGCCCCCGCGTGTTCATGCGCAACGACCACCTGGCCAAGCACATGCGCACGCACGAGTCTCCATCCGgtccaggggaggagaggatgtatGGAGAAGGGGGCAGGATGGGGAAGAGCTTTGACACACCTTCTCCTCAGCCCTCCCACGCCACTGCATCTGACACAGAGGCACCCCTTAAGCAGCCGAAATGTGAGAAAGACCCCTCTGGGACAGGACAGTCCAGCTAACTGTATCCCGTCCACATCTGGAATGCTATACAGATAATGTACAGTCGGTAGGCTACTATCAGCCCCTTTCTATCAGACAGAGAATCCATAGTTTATAATACTTGTAGTCCAGTGGAGGTAGAATCATAGGGGGTTTTATATTATAAATTGATAGTTTATTTCTACCAGATGCATTGAACAACATAAGGCAACAAAGGCGCCTCTGATTTTAAGAATGCATCATATCACACATAACAGCACCATACAGCATAGACAGGCATAAAACCAAAGAGCTTATGTTACATCACCAACAGAGGACAAGCTGTCAAGTGCCTTACTGGAAGGATATCCATCTAAGGAATCAAGGAAAATGATTTTTTAGATGTTGTCTTCCATTTAAGGATAGCTTTGGTGGCAACCAAACCAGAGCCAAAGCTTGCTAGCTGCTAGGACTTccgttgctgctactactattatacCATCCATCCACAGAGACTTTGAGAACGAGCTAAACTGAAGATGGTGCTTGATGTGTTTACAGTAAAACTACTAGCTACTTGGAGAGATATTTATTTCCAGGAAGCCATCAATCTCTCCAGTCTCCACTGCACACATCTAACTGAATTTAAGGCAATGGAAGTAGAGGGTTAGAATATGTTGGTATGTTGTGTTGGCTTCATTTCCCCACCCTTTAACCCACCCCCTTGCCTTGCTGtgtataatatactgtatgtgagtgtATGAACATGTCACTGGGAAATTCCACACTTTATTTTTGGTTTTGACCACGCATAATGTGAGCATCAACCTTTCGCCAAAGAGCACCACAGTAAAGCACCACTAAAATTCATTTTGGTGCGGTATGTGGGCGGTTCAAATGAAAAGGACGGCATTTGCTCTGTAGACGGCAAATGAATTAAAAGTATGGCACTTGAAGTGCAGAGATGTCCCACTACAGCACATTATGGCATGGTATTCATACTCCATGTTTTACGTCAACAAATATATTTTCTGTTTAATGTACATTAAGAAGACATGAATTGTGTTATCAATGTATTTCACTTACAGTAAATGCACCGTATGTATCATCACGTTTAAATATCCCTCAAGCACCGTTGCTCATCTTTTGACACTCCTTATCTCGGCTATGCTGGTGTGAATGTCACATGATGACAGCGTATCTCATTCACAGGAAATGTGTAATTCCTTGGTCTTGTCCCTGATAGTGTACGATCCACACAATACCCATTTCACACTTCACAGAACCGACTGTAGTAACAGGCTGATAAGGATTCCCTTGGACAAAAGACAGGCTGGATACATCGCTAATCATGAAATGTACGCTGGACTGAAATCCCTAATCGAGAGGAACTTATGTAAACCATATTTTGTCACACCAACAACTTCCAGGATAAGCAACAATTCCTCCTCCAAGGATGTTCAAGCATAAAGCCAAAAACAGATGGGGTGGAATTGTTGAGAACCCATTTTGATATTAATAGTCATAAATAACCATTTATATCTTGATAGAAGATGCACTTCGATAAAGTTTTAGGAATCCAGTATAGACCTTTCTAAATAGGCTCAGGCCTGTGTGTCGTGGTTTAGGCTTCTTAGCTTATAGCGCTCACTGTAAAACACATTAGCCTTGTTAGGAAAGCATTGTTGCGTTTTGAGTAGCGACTTAGTCAAAATGTGCTTAGCTATGTAGAGATCTCTTACTGAGGTGTTTATTGTAGCCCCCATTTAGAAACATccctaaatcaaataaaatgtgttttttgaggGTTTACTTGCCTTTTGTGTATCAAATGTGATGAAATGACATCACTTTGAGACTCATCTATTGCAAATCCCTTGGGGCCTGATTCAGACTTAGGAAATGTACGCCTTACACACGTCTTTCCTACGCACTTcacagtagttggtattcagtcTTGCCTTATGAGGGTGCGGTTCCCTTGCGCGTGCCGATACATTTAATTAAaccgctgaaaaccctcccacttgctggccaataGATTTTGTTGTGGAGTTTTCTTTCAATAGGGTTTCCAGTACATGTATCTAAAGCTATCCCTTTAAATGTGGTGTACCTTTAATAGAATTGTCTTGACAGACTCATTCGAATATATGGATAGAACagttcagaatattagggatcaaCGAAAGAAAGCCACGTGGGCATAAATACACGCATATTCATCtccttttcagcaccaattggtagatctTGTATAatcatttagggttaggaaagtatttatgaataatcagttatgagggaattaagtcaagaCAAGGTTCAAATATGGCGTATCtgagggcctcccaagtggcacagcggtctaagtcactgcatcgcaatgctaaaggcgtcactacagacctcgggaagtcccatagggcgccgcacaattggcccagcgtcctccgggttaagggagggtttgaccggtggggctttacttggctcatcgtgctcttgcgactccttgtggtgtgccgggcgcctgcaggctgaccttggTTGTCagggtttggcgggtcatgttttggaggacgcatgactcgacctttgcctcccgagcccgttggggagttgcaacgatgagacaagatcaaaacCTTCACCACACCTTCTTTTTTTAAAATGTCCACCCCAAACAAATAGCAAGTGAATaacatgctattctcatgcttaagttcaaggtcagaatacctgtagagagaaaagtgcatgaAAAGGGAATGACATTCCCTACTACACCTGCTTAACTCGGGTCAGAATTGCCCTGTTGTAGTGCATTTCCAATAGGCCTACCTAGGAACACTTGATACATGTATAAAAAAAAAGGCCTATTGGCTATctctattattattatcatcaatgCTATTATTGAGTTGTATGTGTTAGATAGGAGCAGATTGAAGATTATTAAAATATTATTTAAAACGTACCTTATTTTAAGGATGACTGTAGTATGGTGTCGCAGTAGATATGAATTTAAACAATATTTTGTAATAATTTAAGTACTGCTGTACTATTGCTTGGTTTTAGGACTTGCTTGTAATTTTAATAGAGAAATGTCCTTTAtggaaataaaaatagaaa

Function

NR:

description
transcription factor Sp6-like

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K09196 SP6; transcription factor Sp6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949626.1 True 4432 mRNA 0.46 2 28770295 28784724

Neighbor

gene id symbol gene type direction distance location
LOC110493641 ccd49 coding downstream 1847 28764141 ~ 28768448 (-)
LOC110493640 LOC106564948 coding downstream 6583 28761780 ~ 28763712 (-)
LOC110493637 LOC106564949 coding downstream 21593 28742825 ~ 28748702 (-)
LOC110493635 LOC100194498 coding downstream 99375 28651004 ~ 28670920 (-)
LOC110493634 LOC106564954 coding downstream 124740 28637012 ~ 28645555 (-)
LOC110493650 LOC106564939 coding upstream 61157 28845881 ~ 28848504 (-)
LOC110493648 LOC106564936 coding upstream 74458 28859182 ~ 28886611 (-)
LOC110493647 LOC106564936 coding upstream 113813 28898537 ~ 28922576 (-)
vig-2 NA coding upstream 151947 28936671 ~ 28939970 (-)
LOC110493651 LOC106588089 coding upstream 186380 28971104 ~ 28987462 (-)
G1435903 NA non-coding downstream 16275 28688971 ~ 28754020 (-)
G1435935 NA non-coding downstream 60874 28708473 ~ 28709421 (-)
G1435905 LOC106564952 non-coding downstream 81809 28674474 ~ 28688486 (-)
G1435869 NA non-coding downstream 191610 28578453 ~ 28578685 (-)
G1435867 NA non-coding downstream 195076 28573837 ~ 28575219 (-)
G1436041 NA non-coding upstream 143040 28927764 ~ 28928014 (-)
G1436056 NA non-coding upstream 172615 28957339 ~ 28957786 (-)
G1436104 NA non-coding upstream 274645 29059369 ~ 29059568 (-)
G1435467 NA other downstream 222739 28547273 ~ 28547556 (-)
LOC110495156 LOC106564766 other downstream 403054 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 other downstream 441418 28328130 ~ 28328877 (-)
G1435199 LOC106587683 other downstream 569613 28189019 ~ 28200682 (-)
G1435257 NA other downstream 587734 28181042 ~ 28182561 (-)
G1436694 NA other upstream 827528 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 1153602 29926378 ~ 29979179 (-)
G1437411 NA other upstream 1265878 30050602 ~ 30114123 (-)
G1437507 NA other upstream 1456726 30241450 ~ 30243706 (-)
G1437609 NA other upstream 1682599 30467323 ~ 30468772 (-)

Expression


Co-expression Network