XLOC_033246


Basic Information

Item Value
gene id XLOC_033246
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 56387454 ~ 56389460 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065256
AAGAGACACACAGCGTGACAGAAAGGAAAACCGAGTGATTATAAAGTAAATATAGCGAAAATACATTAGTTAAAACTTTTGAAAccaatataatgttaaaaatataagtcTATAGCACGAGGATGGTGAGGGATTGAGTAGATATATGCTGATTTGAGCGTGATGGATGCATTTTGACTCGAGAGGAGAACATTTTagtaaAGGCAAATTTTGCTATCGGGGAGAAGATTTGCTCTGCATGATGATCAGATGTTCTCCGCCTGCGTTTCTCGGCCCCCAAAAAAGAACAAGAAAATCTGCAAAGTGCACAAGACTTTCTGCTGACAGTCTGATTATGCGAGACTAACATGACCCCAGACTTATAGTGGTGATGTTTGCACCTTTTCCAGTGTAATACAATTCATACAATTCGCACAGAACGACATTAGCATGCGCAATCATTTATTAAAAGTGCCAGGATGCATAATTCACATCTTACAAATGTTGCATAACAGAAAGTGTCCGACGATAACAAACAACCCGAGCGGCACAAAAATAGCTCCTTCTAAAGCGTGC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042246 tissue regeneration biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0031101 fin regeneration biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0061053 somite development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0042060 wound healing biological_process
GO:0030684 preribosome cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065256 True 555 lncRNA 0.39 2 56387454 56389460

Neighbor

gene id symbol gene type direction distance location
XLOC_033244 gcnt7 coding downstream 275625 56097971 ~ 56111829 (-)
XLOC_033243 NA coding downstream 313528 56061721 ~ 56073926 (-)
XLOC_033242 NA coding downstream 348637 56009178 ~ 56038817 (-)
XLOC_033241 eya2 coding downstream 390104 55909795 ~ 55997350 (-)
XLOC_033240 cyp24a1 coding downstream 522767 55852274 ~ 55864687 (-)
XLOC_033247 CR388191.1 coding upstream 149549 56539009 ~ 56539125 (-)
XLOC_033248 cdh22 coding upstream 249228 56638688 ~ 56877366 (-)
XLOC_033249 NA coding upstream 565480 56954940 ~ 57108188 (-)
XLOC_033250 NA coding upstream 718865 57108325 ~ 57122910 (-)
XLOC_033251 CABZ01034962.1 coding upstream 874050 57263510 ~ 57263645 (-)
XLOC_033239 BX470154.1 non-coding downstream 559937 55814757 ~ 55827517 (-)
XLOC_033238 LO017956.1 non-coding downstream 737203 55650119 ~ 55650251 (-)
XLOC_033237 CR847793.1 non-coding downstream 832058 55555262 ~ 55555396 (-)
XLOC_033256 NA non-coding upstream 1231445 57620905 ~ 57621869 (-)

Expression


Co-expression Network