LOC110493650 (LOC106564939)


Basic Information

Item Value
gene id LOC110493650
gene name LOC106564939
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28845881 ~ 28848504 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568044.2
AGATAGGAGCTGACCTTCGTTCCTCCACAGTGGAGGCTGTCCCGGTGTCTAGCTCAAAGTCCAGGTCTGGGTGCCGGTTGACGTGACAGAGTGAGTtgtctcgttccctctctctctgtgtttgtgcttCTCTCATTCCTCCAGCTGAACTCTGTGGATCATCAACGCTGTGTCCCTAGCTGTCCCTTCGCTTCTCTGAACCTCAATATGATACACTGGGCCTCCCTTGCTCTCCTTCTGGTTTTGAGCCTCTCCATCCAGGGGACCCTCTCCCAGGACGCTGAGGAACCTGCACCAGTGGACCCAAGCCAGGCCCCTGTCGACCCCTCCCAGGCAGAGGATGAGGACGAGTGGGGACTGAACTCCGTTAGGGGAGGCTTTGAAGCCGTCAATGGATACTTTGACTCCATGCTGGAGCTTATGGGCGGACGTGATGGAGTGTGCCAGTACCGCTGTCGATATGGTAAAGCTGCTCTTCCTCGCCCTGACTACCAGATGCAGGAGCCCAACGGATGCAGCTCCTACTTCCTAGGCCTTCCGGTACCCAATAGTGTTGATCTGGGTATCCCTGCCATGACTAAGTGTTGCAACCAGCTGGATATGTGTTACGACACCTGCGGCTCCAACAAGTACCGCTGCGACTCCAAGTTCCGCTGGTGTCTCCACAGCATCTGCTCTGACCTCAAGAAGAGCCTGGGCTTCATGTCAAAGGTCGAAGCCTGTGAGACGGTAGCTGACACCCTGTTCAACACAGTCTGGACTCTGGGCTGCAGGCCCTACATGAATAGCCAGAGGGAAGCCTGCCtctgtgaaggagaggagagggatgagctTTAAATTAGGGttatagacatacacacacacacacactcgcatatATATGCACACAACACACGCACAGCTATCCTATTCACCAAGTTATATGGGATACGTCACTCCAAATGACTGCTGGAGATGCGACTTGGCTATTTGTGTAATTTATTTGGTGTGTTTTACTTGGTTTTGTTTAACAGAACAAGTGCTGTATATTTGCAATAATTGTTgggtttattttttaaatctgcaaAAAAACATGTACTACAATACAA
>XM_021568045.2
caatCTAGATAGGAGCTGACCTTCGTTCCTCCACAGTGGAGGCTGTCCCGGTGTCTAGCTCAAAGTCCAGGTCTGGGTGCCGGTTGACGTGACAGAGTGAGTtgtctcgttccctctctctctgtgtttgtgcttCTCTCATTCCTCCAGCTGAACTCTGTGGATCATCAACGCTGTGTCCCTAGCTGTCCCTTCGCTTCTCTGAACCTCAATATGATACACTGGGCCTCCCTTGCTCTCCTTCTGGTTTTGAGCCTCTCCATCCAGGGGACCCTCTCCCAGGACGCTGAGGAACCTGCACCAGTGGACCCAAGCCAGGCCCCTGTCGACCCCTCCCAGGCAGAGGATGAGGACGAGTGGGGACTGAACTCCGTTAGGGGAGGCTTTGAAGCCGTCAATGGATACTTTGACTCCATGCTGGAGCTTATGGGCGGACGTGATGGAGTGTGCCAGTACCGCTGTCGATATGGTAAAGCTGCTCTTCCTCGCCCTGACTACCAGATGCAGGAGCCCAACGGATGCAGCTCCTACTTCCTAGGCCTTCCGGTTGATCTGGGTATCCCTGCCATGACTAAGTGTTGCAACCAGCTGGATATGTGTTACGACACCTGCGGCTCCAACAAGTACCGCTGCGACTCCAAGTTCCGCTGGTGTCTCCACAGCATCTGCTCTGACCTCAAGAAGAGCCTGGGCTTCATGTCAAAGGTCGAAGCCTGTGAGACGGTAGCTGACACCCTGTTCAACACAGTCTGGACTCTGGGCTGCAGGCCCTACATGAATAGCCAGAGGGAAGCCTGCCtctgtgaaggagaggagagggatgagctTTAAATTAGGGttatagacatacacacacacacacactcgcatatATATGCACACAACACACGCACAGCTATCCTATTCACCAAGTTATATGGGATACGTCACTCCAAATGACTGCTGGAGATGCGACTTGGCTATTTGTGTAATTTATTTGGTGTGTTTTACTTGGTTTTGTTTAACAGAACAAGTGCTGTATATTTGCAATAATTGTTgggtttattttttaaatctgcaaAAAAACATGTACTACAATACAA

Function

NR:

description
group XIIB secretory phospholipase A2-like protein isoform X2

GO: NA

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568044.2 False 1088 mRNA 0.51 4 28845881 28848498
XM_021568045.2 True 1082 mRNA 0.51 4 28845881 28848504

Neighbor

gene id symbol gene type direction distance location
LOC110493642 LOC106564946 coding downstream 61157 28770295 ~ 28784724 (-)
LOC110493641 ccd49 coding downstream 77433 28764141 ~ 28768448 (-)
LOC110493640 LOC106564948 coding downstream 82169 28761780 ~ 28763712 (-)
LOC110493637 LOC106564949 coding downstream 97179 28742825 ~ 28748702 (-)
LOC110493635 LOC100194498 coding downstream 174961 28651004 ~ 28670920 (-)
LOC110493648 LOC106564936 coding upstream 10678 28859182 ~ 28886611 (-)
LOC110493647 LOC106564936 coding upstream 50033 28898537 ~ 28922576 (-)
vig-2 NA coding upstream 88167 28936671 ~ 28939970 (-)
LOC110493651 LOC106588089 coding upstream 122600 28971104 ~ 28987462 (-)
LOC110493655 LOC106588090 coding upstream 157265 29005769 ~ 29019685 (-)
G1435933 LOC106564951 non-coding downstream 71242 28704255 ~ 28774639 (-)
G1435903 NA non-coding downstream 91861 28688971 ~ 28754020 (-)
G1435935 NA non-coding downstream 136460 28708473 ~ 28709421 (-)
G1435905 LOC106564952 non-coding downstream 157395 28674474 ~ 28688486 (-)
G1435869 NA non-coding downstream 267196 28578453 ~ 28578685 (-)
G1436041 NA non-coding upstream 79260 28927764 ~ 28928014 (-)
G1436056 NA non-coding upstream 108835 28957339 ~ 28957786 (-)
G1436104 NA non-coding upstream 210865 29059369 ~ 29059568 (-)
G1435467 NA other downstream 298325 28547273 ~ 28547556 (-)
LOC110495156 LOC106564766 other downstream 478640 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 other downstream 517004 28328130 ~ 28328877 (-)
G1435199 LOC106587683 other downstream 645199 28189019 ~ 28200682 (-)
G1435257 NA other downstream 663320 28181042 ~ 28182561 (-)
G1436694 NA other upstream 763748 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 1089822 29926378 ~ 29979179 (-)
G1437411 NA other upstream 1202098 30050602 ~ 30114123 (-)
G1437507 NA other upstream 1392946 30241450 ~ 30243706 (-)
G1437609 NA other upstream 1618819 30467323 ~ 30468772 (-)

Expression


Co-expression Network