LOC110493651 (LOC106588089)


Basic Information

Item Value
gene id LOC110493651
gene name LOC106588089
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28971104 ~ 28987462 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568046.2
AGCAAAGGAGCAAATTCCACTTTTCTGGTGTCGTCGGCTTTGAATGTCAAAAACAATCGATGAATCAAATCAATAAAGAAAAGAGGAACTTTGTTACTTTTGTGAACAAATTTCCGGCATCACGTTTTACCTCCCCTCTCAAGATGACGACTCCTCAGTATGACCTGTCAAACACGCTCCCTCCCCACACACTGACCCGACTGGCACGGGAGTGGCTGGCAGAGGACACACCAAACTTTGACCCTGCAGGGCTGTGTGTGGGGTCACATGAGGTCGAGGCCAGGTTGTTGTGTAAAACGCCGTGCAGCATGCTGGCAGGCAGGCCTTTCTTCACTGCTGTCTTCACTGAGCTCAGCTGCACTGTTGAATGGGCGCACAAAGAGGGAGCACAGCTCGGTCCAAATGCGGTGACCCagactgctgtggtcagaggcCCAGCAAGGTGTATCCTCCTCGGGGAGAGACCGGCCCTCAACTGCCTGGCCCGGGCCTCTGGGATAGCCACCCGCTGCTCCCAGCTACAGAGCATCGCCAGGGAGGCAGGCTGGCATGGCCATGTGGCTGGCACGCGTAAAACCACCCCTGGGTTCCGGCTGGTGGAGAAGTATGCCATGCTGGTGGGCGGCGTGTCCATACACAGACAGGACCTGAGTGGGATGGTGATGCTGAAAGACAATCATATATGGGCATCAGGGAGTATCACACAGGCGGTGAGGGACGCCCGCTCGGTGTGTGGCTTCAGCAGTAAGATTGAGGTGGAGTGCGGCAGCCGGGAGGAGGGCAGTGAGGCGGCCACGGCAGGCGCCGACATCGTCATGCTGGACAACTTTAAGCCACAGGAACTCCATGCGGCAGCCAAGCTTCTGAAGGAGGAGTTCCCTTCTGTGCTAATCGAGGCCAGTGGAGGGGTGACCCCAGACTCCCTGCCCCAGTATCTCTCCCCCCATGTGGACATCATCTCTCTGGGCTGCATCACCCAGGGCTGCCCAGTGGTAGACTTCTCCCTCAAGGTTCAAAAGCCTGTTCCCTTTCCAATTATTTTCCAATCAAAGTAACTGTGGCAATTCAGGATTTTTGTTAATAAAGTGAAAATAAAAAGCAA
>XM_036949645.1
GATAAGCATAAGAGCATTAAAAAGGGAGAAGACCACTATAAGCCTGGCCATGTGGAGAAGTACAGCCAGAGTGACGGGCAATTTACCGGTTTGGTCAGGGCCATGAGGGATAAAGTTTATCCTGTGTcaAACAAATTTCCGGCATCACGTTTTACCTCCCCTCTCAAGATGACGACTCCTCAGTATGACCTGTCAAACACGCTCCCTCCCCACACACTGACCCGACTGGCACGGGAGTGGCTGGCAGAGGACACACCAAACTTTGACCCTGCAGGGCTGTGTGTGGGGTCACATGAGGTCGAGGCCAGGTTGTTGTGTAAAACGCCGTGCAGCATGCTGGCAGGCAGGCCTTTCTTCACTGCTGTCTTCACTGAGCTCAGCTGCACTGTTGAATGGGCGCACAAAGAGGGAGCACAGCTCGGTCCAAATGCGGTGACCCagactgctgtggtcagaggcCCAGCAAGGTGTATCCTCCTCGGGGAGAGACCGGCCCTCAACTGCCTGGCCCGGGCCTCTGGGATAGCCACCCGCTGCTCCCAGCTACAGAGCATCGCCAGGGAGGCAGGCTGGCATGGCCATGTGGCTGGCACGCGTAAAACCACCCCTGGGTTCCGGCTGGTGGAGAAGTATGCCATGCTGGTGGGCGGCGTGTCCATACACAGACAGGACCTGAGTGGGATGGTGATGCTGAAAGACAATCATATATGGGCATCAGGGAGTATCACACAGGCGGTGAGGGACGCCCGCTCGGTGTGTGGCTTCAGCAGTAAGATTGAGGTGGAGTGCGGCAGCCGGGAGGAGGGCAGTGAGGCGGCCACGGCAGGCGCCGACATCGTCATGCTGGACAACTTTAAGCCACAGGAACTCCATGCGGCAGCCAAGCTTCTGAAGGAGGAGTTCCCTTCTGTGCTAATCGAGGCCAGTGGAGGGGTGACCCCAGACTCCCTGCCCCAGTATCTCTCCCCCCATGTGGACATCATCTCTCTGGGCTGCATCACCCAGGGCTGCCCAGTGGTAGACTTCTCCCTCAAGGTTCAAAAGCCTGTTCCCTTTCCAATTATTTTCCAATCAAAGTAACTGTGGCAATTCAGGATTTTTGTTAATAAAGTGAAAATAAAAAGCAA
>XM_036949647.1
AACACCTATAAAACCTAGCGGTAAAACATGGAAATAATTCCATACATTTTTCACGTTGGGAATTTTACAAACACTTTAAAAACAAATTTCCGGCATCACGTTTTACCTCCCCTCTCAAGATGACGACTCCTCAGTATGACCTGTCAAACACGCTCCCTCCCCACACACTGACCCGACTGGCACGGGAGTGGCTGGCAGAGGACACACCAAACTTTGACCCTGCAGGGCTGTGTGTGGGGTCACATGAGGTCGAGGCCAGGTTGTTGTGTAAAACGCCGTGCAGCATGCTGGCAGGCAGGCCTTTCTTCACTGCTGTCTTCACTGAGCTCAGCTGCACTGTTGAATGGGCGCACAAAGAGGGAGCACAGCTCGGTCCAAATGCGGTGACCCagactgctgtggtcagaggcCCAGCAAGGTGTATCCTCCTCGGGGAGAGACCGGCCCTCAACTGCCTGGCCCGGGCCTCTGGGATAGCCACCCGCTGCTCCCAGCTACAGAGCATCGCCAGGGAGGCAGGCTGGCATGGCCATGTGGCTGGCACGCGTAAAACCACCCCTGGGTTCCGGCTGGTGGAGAAGTATGCCATGCTGGTGGGCGGCGTGTCCATACACAGACAGGACCTGAGTGGGATGGTGATGCTGAAAGACAATCATATATGGGCATCAGGGAGTATCACACAGGCGGTGAGGGACGCCCGCTCGGTGTGTGGCTTCAGCAGTAAGATTGAGGTGGAGTGCGGCAGCCGGGAGGAGGGCAGTGAGGCGGCCACGGCAGGCGCCGACATCGTCATGCTGGACAACTTTAAGCCACAGGAACTCCATGCGGCAGCCAAGCTTCTGAAGGAGGAGTTCCCTTCTGTGCTAATCGAGGCCAGTGGAGGGGTGACCCCAGACTCCCTGCCCCAGTATCTCTCCCCCCATGTGGACATCATCTCTCTGGGCTGCATCACCCAGGGCTGCCCAGTGGTAGACTTCTCCCTCAAGGTTCAAAAGCCTGTTCCCTTTCCAATTATTTTCCAATCAAAGTAACTGTGGCAATTCAGGATTTTTGTTAATAAAGTGAAAATAAAAAGCAA
>XM_021568047.2
AGTCAGCCACAGTGGGCGGGTCATAACACCTATAAAACCTAGCGGTAAAACATGGAAATAATTCCATACATTTTTCACGTTGGGAATTTTACAAACACTTTAAAGTAAGTGTGTTTGGTGTAGGTTTTGACAACCGTTTAATTCTCTCTCAGATAAGAACAAATTTCCGGCATCACGTTTTACCTCCCCTCTCAAGATGACGACTCCTCAGTATGACCTGTCAAACACGCTCCCTCCCCACACACTGACCCGACTGGCACGGGAGTGGCTGGCAGAGGACACACCAAACTTTGACCCTGCAGGGCTGTGTGTGGGGTCACATGAGGTCGAGGCCAGGTTGTTGTGTAAAACGCCGTGCAGCATGCTGGCAGGCAGGCCTTTCTTCACTGCTGTCTTCACTGAGCTCAGCTGCACTGTTGAATGGGCGCACAAAGAGGGAGCACAGCTCGGTCCAAATGCGGTGACCCagactgctgtggtcagaggcCCAGCAAGGTGTATCCTCCTCGGGGAGAGACCGGCCCTCAACTGCCTGGCCCGGGCCTCTGGGATAGCCACCCGCTGCTCCCAGCTACAGAGCATCGCCAGGGAGGCAGGCTGGCATGGCCATGTGGCTGGCACGCGTAAAACCACCCCTGGGTTCCGGCTGGTGGAGAAGTATGCCATGCTGGTGGGCGGCGTGTCCATACACAGACAGGACCTGAGTGGGATGGTGATGCTGAAAGACAATCATATATGGGCATCAGGGAGTATCACACAGGCGGTGAGGGACGCCCGCTCGGTGTGTGGCTTCAGCAGTAAGATTGAGGTGGAGTGCGGCAGCCGGGAGGAGGGCAGTGAGGCGGCCACGGCAGGCGCCGACATCGTCATGCTGGACAACTTTAAGCCACAGGAACTCCATGCGGCAGCCAAGCTTCTGAAGGAGGAGTTCCCTTCTGTGCTAATCGAGGCCAGTGGAGGGGTGACCCCAGACTCCCTGCCCCAGTATCTCTCCCCCCATGTGGACATCATCTCTCTGGGCTGCATCACCCAGGGCTGCCCAGTGGTAGACTTCTCCCTCAAGGTTCAAAAGCCTGTTCCCTTTCCAATTATTTTCCAATCAAAGTAACTGTGGCAATTCAGGATTTTTGTTAATAAAGTGAAAATAAAAAGCAA

Function

NR:

description
nicotinate-nucleotide pyrophosphorylase [carboxylating]-like isoform X1

GO:

id name namespace
GO:0009435 NAD biosynthetic process biological_process
GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity molecular_function

KEGG:

id description
K00767 nadC, QPRT; nicotinate-nucleotide pyrophosphorylase (carboxylating)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568046.2 False 1102 mRNA 0.55 5 28971104 28981732
XM_036949645.1 False 1127 mRNA 0.56 5 28971104 28986924
XM_036949647.1 False 1078 mRNA 0.55 5 28971104 28987438
XM_021568047.2 True 1155 mRNA 0.55 5 28971104 28987462

Neighbor

gene id symbol gene type direction distance location
vig-2 NA coding downstream 31134 28936671 ~ 28939970 (-)
LOC110493647 LOC106564936 coding downstream 48528 28898537 ~ 28922576 (-)
LOC110493648 LOC106564936 coding downstream 84493 28859182 ~ 28886611 (-)
LOC110493650 LOC106564939 coding downstream 122600 28845881 ~ 28848504 (-)
LOC110493642 LOC106564946 coding downstream 186380 28770295 ~ 28784724 (-)
LOC110493655 LOC106588090 coding upstream 18307 29005769 ~ 29019685 (-)
LOC110493654 LOC106588091 coding upstream 33242 29020704 ~ 29023660 (-)
LOC110493656 dysi1 coding upstream 39932 29027394 ~ 29030519 (-)
LOC110493653 p4hb coding upstream 43218 29030680 ~ 29045909 (-)
LOC110493660 NA coding upstream 82535 29069997 ~ 29073405 (-)
G1436056 NA non-coding downstream 13318 28957339 ~ 28957786 (-)
G1436041 NA non-coding downstream 43090 28927764 ~ 28928014 (-)
G1435933 LOC106564951 non-coding downstream 196465 28704255 ~ 28774639 (-)
G1436104 NA non-coding upstream 71907 29059369 ~ 29059568 (-)
G1436105 NA non-coding upstream 72649 29060111 ~ 29060311 (-)
G1436111 NA non-coding upstream 79245 29066707 ~ 29069038 (-)
G1436237 NA non-coding upstream 293137 29280599 ~ 29280833 (-)
G1436251 NA non-coding upstream 302807 29290269 ~ 29292004 (-)
G1435467 NA other downstream 423548 28547273 ~ 28547556 (-)
LOC110495156 LOC106564766 other downstream 603863 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 other downstream 642227 28328130 ~ 28328877 (-)
G1435199 LOC106587683 other downstream 770422 28189019 ~ 28200682 (-)
G1435257 NA other downstream 788543 28181042 ~ 28182561 (-)
G1436694 NA other upstream 624790 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 950864 29926378 ~ 29979179 (-)
G1437411 NA other upstream 1063140 30050602 ~ 30114123 (-)
G1437507 NA other upstream 1253988 30241450 ~ 30243706 (-)
G1437609 NA other upstream 1479861 30467323 ~ 30468772 (-)

Expression


Co-expression Network