LOC110493655 (LOC106588090)


Basic Information

Item Value
gene id LOC110493655
gene name LOC106588090
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 29005769 ~ 29019685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568054.2
TTGCACGCCACCTGCATTGAGCGTGCGCGCCGCGGCATAGTTCCCGGAAACGAGTTGTATGGGGCGGCGCCGTTCCTTGTTCGCCATACTTGCACAGAGCAGAGCGacagaagcacttattcttcaaGCGCCTGGGGAAAAAGCAGCAGGAAAACGACATGGCTGAGGATGATTTGACTCCGGAGCAGCTTGCAGCCATCGCTGCGGAAAATGACGTGGGCGAGACGGTCAACTACAAGCCCCCGGCCCAGAAGACCCTGCAGGAGATCCAGGAGCTGGACCAGGATGACGAGAGCCTCCGGAAGTACAAGGAGGTTCTGCTAGGAGCCGGAGCTGCTGCTGTCGCTGATCCCAGCGTTCCCAACGTCCAGGTGACACGGTTGACACTGATGTGTGAGACTGCCCCGAACCCACTGACCCTGGACCTCCAAGGAGATCTGGAGGCCTTTAAGAAGCAGTCCTTTATCCTGAAGGAGGGAGTGGAGTACAGAATAAAGATCAGCTTCAAAGTGAACAAGGAGATTGTTTCGGGACTCAAGTATGTCCAGCAGACCCACAGGAAAGGAGTGAGAATTGACAAGTCAGACTACATGGTGGGGAGCTATGGGCCGAGGCCAAATGAGTACGACTTCCTGACCCCGCTGGAGGAGGCTCCTAAAGGCATGCTGGCCCGCGGCACCTACAACATCAAGTCCAAGTTCACCGACGACGATAAGCACGACCACCTTTCCTGGGAGTGGAACCTCAACATCAAGAAAGACTGGAAAGACTAAGAAAGAGGCCTTCAAAACCAAACCCCACAACCATGTCCCCATTTCTCCATGAGTTTATTTTCTTCTACTTCATCCCATCCTCGTGTCTTCAATCTTCATTCCgacccttccatccctctctcgtctctcccacGTTTCTCCCCATTTATCCGTCTgcattagtagcagcagcagaagcaACGGCCCCCTCTGTCCGTCCATCCCCCCCCTCTGCTTTCATTGGTTGCACAAAGTCCACCATAATTGATTCACTGTCCTCAACCTGCCAGTGCAGTCAGTAATGTGATTTTGCCGTGttttgtatatacatatatatccacactatgagtttggaataatattgttaaaattatgataatgccctttcagtgttggagctgtttgaaaagactgccttggtgggatggagttttggccccCTGGTGACTTCACCAgtcagtaaattagttaatagaccaataaagaagagttccaaacctctctgccaataacagctagttttgcCTTCCCCACTGAGGCCACTCCCAGACAGCCCTAgccaaattcttgcttgagaaattgctctttgctaagaagctatttttggttTTTTTGgccattgttttcaattaaaatcacagtaaggtacttaattgttacccagaaatgaatAGATATATAAAAACGGCTGAATTGGACCTTTTTAAGTCTCTCATAGCTGTACTGCCCAGGATCTGTCCTCCAACCCCCCACCCCTCATGGTTTGTCCTGCTTGAAGAGATTAAACACCCCTTTGCTCCCTAAATGGTCTTCCTGTCAGTAAGAAGTACACGTGGAAAAGCAAGTGTACAATCACCTTTACTTTAgccttttttatatatatatatatatatgaatactAGTATACTGTGGCTTTGTTCATGTCACTGTTGATATTAATCAGCTTTTATGGTCATTCCTTCCCCGCCATCTTGTTCTGCCCCCTTTTAGCATTCCTTTGCTTGCCTCCTTGctagttgttttttttatatattttaccaAGACCTGCCTTGTTAAAGATATTCTCCTGaacttttgtattatttttttgccAGTGGTTCTGAAAGTAGCACCCATGAGCCAAAAGTAATCCCCAAAATTGCATGTGTCACaaatgtgcagatatgtgcactacgtcatttctctctcgctctattgTGTGTGCGTCTTGCTAGCCGTCACTggtgaggggctgaagctcattggctgaaACTTGAATTACTAAGGGGCTTGCCCAAGTGGGGGTGAATATAGGGAGAAAAGTTCTGGAGCATGTCTTTTAAACATACAGTGAATTAATAATGAGCTACTTTACTTCAGCTCCTCCAACCCCCCTTAAATGTATTAACCATTTCCTCTTACATGGGGATTTGGGCCACGGTCACCTAATGTAgcaggtgtaaaaaaaaacatctgaaactAGATCTCCTACAtaaggggtattcaactcttaccctacgaggtccgcaGCCTTGTTAATGTCCAAAAGCGGAAGTCCATTTACCCTGAAAACAGGAACTTCCAGTTGTTGGGGACTCGGCAGAGGCTAGGGCCAAGGAAGTGAAAGATATCATAACATTGGATGAAAAAAAAGGGCGTAAGCCCTAGTGCTGCCTTATACCGAAATATCAAAATAATCAGTTTAACTCACCAATAATCAGTTTACTACTCTTGCGCAGTTATCATGGTGGTGCACTAACAGATGGTGCATGACTTGGGCTGTATGTTGTATATTTCATGTGGTGCTTGCCATCAGGTAGACTCACTCAAGGGCATATTGTACTATCAACTGTTCACCATCTTAATCTCTTTGCTAGTTGTGATTCTCCCTGTAAAGTTTACACACATGCTGCTCCTGGCCTGTTTTGTCTAAACTCAACCTCCGCTAAACACAAGTAAACATGGTAGTTAGAATGAGAATAGAATACACCACCTAGAATTTACCAATGTGTTTTTTTCCTTGCCCACCCCAGCAGGCCACGTCATCATTATTGATAACACACTTGTGTTCCTTAGCCATGAGGCCTTATCGTCGACTTTGATCGCGTGAAAAAGAAAGACCacgattttgtatttttttttgcctTAATGTACATCAATCCCAAATCCAatttccctcctcccccctcactcaCATTTTGTTACGACCCTTAGAGCCTGCTGTCGGAGGTCAAATGAGATGACAAGTACCAGAGAAAGCACAGGAGTAGAGAATGACTCACCGTCTGCTGCTGGAGACATTGACGGTGTTTCAACTCTCATTAGGAACAGGAGCTGGTAGGGTTAAGATGTACACCTCCACAGTCAGGCCCCAGCCTTTGCCCAATGACATATTGACGGAAAGAGACGTTGATGGAAAAATTGTAGCGTTTGCACAGAGTAGGATGTGCTAGCAGAAAATGCGTGATACTGTTTGAGTATGTTAAGAGGGAGGGATTTTGGATCAGAAAGTGGAATTGACATGTACTGTACCCTAAGCATATGGATGTAAAAGTGTTTCAGATATTGTGAATGATCTTATGCTTTCCCATACATTCCTTCACACATTGTACAGTTTCAATGAAGATGCTGGCATGCTGGTGGGGTTGTATAAATATTTGATCATTTGTGATTGCTCTTCTTGGACAATAAAGATGTTGCTCAACTTGG

Function

NR:

description
PREDICTED: rho GDP-dissociation inhibitor 1-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0005094 Rho GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K12462 ARHGDI, RHOGDI; Rho GDP-dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568054.2 True 3440 mRNA 0.45 6 29005769 29019685
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493651 LOC106588089 coding downstream 18307 28971104 ~ 28987462 (-)
vig-2 NA coding downstream 65799 28936671 ~ 28939970 (-)
LOC110493647 LOC106564936 coding downstream 83193 28898537 ~ 28922576 (-)
LOC110493648 LOC106564936 coding downstream 119158 28859182 ~ 28886611 (-)
LOC110493650 LOC106564939 coding downstream 157265 28845881 ~ 28848504 (-)
LOC110493654 LOC106588091 coding upstream 1019 29020704 ~ 29023660 (-)
LOC110493656 dysi1 coding upstream 7709 29027394 ~ 29030519 (-)
LOC110493653 p4hb coding upstream 10995 29030680 ~ 29045909 (-)
LOC110493660 NA coding upstream 50312 29069997 ~ 29073405 (-)
LOC110493661 LOC106564921 coding upstream 55665 29075350 ~ 29265767 (-)
G1436056 NA non-coding downstream 47983 28957339 ~ 28957786 (-)
G1436041 NA non-coding downstream 77755 28927764 ~ 28928014 (-)
G1435935 NA non-coding downstream 296348 28708473 ~ 28709421 (-)
G1436104 NA non-coding upstream 39684 29059369 ~ 29059568 (-)
G1436105 NA non-coding upstream 40426 29060111 ~ 29060311 (-)
G1436111 NA non-coding upstream 47022 29066707 ~ 29069038 (-)
G1436237 NA non-coding upstream 260914 29280599 ~ 29280833 (-)
G1436251 NA non-coding upstream 270584 29290269 ~ 29292004 (-)
G1435467 NA other downstream 458213 28547273 ~ 28547556 (-)
LOC110495156 LOC106564766 other downstream 638528 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 other downstream 676892 28328130 ~ 28328877 (-)
G1435199 LOC106587683 other downstream 805087 28189019 ~ 28200682 (-)
G1435257 NA other downstream 823208 28181042 ~ 28182561 (-)
G1436694 NA other upstream 592567 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 918641 29926378 ~ 29979179 (-)
G1437411 NA other upstream 1030917 30050602 ~ 30114123 (-)
G1437507 NA other upstream 1221765 30241450 ~ 30243706 (-)
G1437609 NA other upstream 1447638 30467323 ~ 30468772 (-)

Expression

LOC110493655(LOC106588090) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110493655(LOC106588090) Expression in each Bioproject

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LOC110493655(LOC106588090) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network