LOC110493654 (LOC106588091)


Basic Information

Item Value
gene id LOC110493654
gene name LOC106588091
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 29020704 ~ 29023660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568052.2
GTAAGAATACACTCACGTCACTTACTACAATTATTTTTAAGCCCACTCACGTCACTCAAGCTATTCGCCATTGATCAGCACCGAGGAAAGCGGCTAGATTTTGCTACCAAAAGCGTCATTCTTAAAGTAAATTTTCCATTTATTTGTTGATCTTTAATACGACAAGTGCCACCATGGCTGATAAGATGGATATGTCTTTGGATGACATTATCCAACAAAGTAAGAAAGGCGGAGGTGGCCGCGGAAATCGAGGAGGCCGCAGCCGAGGATCATCGGGTCGAGGTGGGAGTGGAGGCCGACCCGGTGGAGCTGCCTCTGGAGGCCGGACCGGCGGATCCGGGCCCATGAGGAGTCGACAGAACTTCAGTGGAGACAGAAGCGACAGCAGACCCACGCCATACAGCAGGCCCAGAGAGCTGCCGGACAAATGGCAACACGACATGTTCGAAGGTGGCTTCGGCAGTAATGCTGGCGGTGGTGGGGGAGCAGGAGGTGGCGGTGTGGAGACTGGTGGCAAGCTTCTTGTCTCAAACCTTGACTTCGGTGTGTCTGACGCTGATATCCAGGAGTTGTTTGCGGAATTCGGTACGTTGAAGAAAGCGGCTGTGCACTATGACCGGTCTGGCCGCAGCCAGGGAACTGCTGACGTCCACTTTGAGAGGAGGGCTGATGCACTCAAAGCCATGAAACAGTACAACAATGTACCACTTGATGGCCGCGCCATGAGCATTCAGCACGTCACGTCACAAATTCGAGACGATAACCAGAGACGACCATCACAGAGTTCAAACGGAGGCAGTGGTGGATTCAACAGAGACAGAATTGGACGCCCCAATTTCTCAGACAGACGGGGAGGTGGAGACAGGCGGGCCGGCAGAGGCTCCAGGGGGAGGGGTAGAGGCGGACGTGGTGGTGGAGGCAAACCGCAGCAGTTGTCTGCTGAAGAGCTGGATGCCCAGTTGGATGCTTACAATGCTAAGATGGAGACCAGTTAGAATTCCCAGAAGCACTCATTTGAATCCCTCATCTTCATCCTGTCGGATCTGAAGCTTGATATTGTGGACTTGGACCTGAAATGGACCAGATCTTTTACACTTACTGTTATTTGGCATCATTTTAATGTGTGGCTGGATCTTGCTTTACTCCCTTTTTAATATTATGAACACTTTTTGTACCGTTTTGGGACAATTGTAGGTTTTTGAGggggagatttttttttttggccTTTTGCCTCCCCTTCTCCTTGTGCATAGTTGTAATAAACCTACAAAACAAAATGTTCCAGTT

Function

NR:

description
THO complex subunit 4-like

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K12881 THOC4, ALY; THO complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568052.2 True 1287 mRNA 0.50 6 29020704 29023660

Neighbor

gene id symbol gene type direction distance location
LOC110493655 LOC106588090 coding downstream 1019 29005769 ~ 29019685 (-)
LOC110493651 LOC106588089 coding downstream 33242 28971104 ~ 28987462 (-)
vig-2 NA coding downstream 80734 28936671 ~ 28939970 (-)
LOC110493647 LOC106564936 coding downstream 98128 28898537 ~ 28922576 (-)
LOC110493648 LOC106564936 coding downstream 134093 28859182 ~ 28886611 (-)
LOC110493656 dysi1 coding upstream 3734 29027394 ~ 29030519 (-)
LOC110493653 p4hb coding upstream 7020 29030680 ~ 29045909 (-)
LOC110493660 NA coding upstream 46337 29069997 ~ 29073405 (-)
LOC110493661 LOC106564921 coding upstream 51690 29075350 ~ 29265767 (-)
LOC110495134 LOC106588153 coding upstream 312346 29336006 ~ 29364013 (-)
G1436056 NA non-coding downstream 62918 28957339 ~ 28957786 (-)
G1436041 NA non-coding downstream 92690 28927764 ~ 28928014 (-)
G1435935 NA non-coding downstream 311283 28708473 ~ 28709421 (-)
G1436104 NA non-coding upstream 35709 29059369 ~ 29059568 (-)
G1436105 NA non-coding upstream 36451 29060111 ~ 29060311 (-)
G1436111 NA non-coding upstream 43047 29066707 ~ 29069038 (-)
G1436237 NA non-coding upstream 256939 29280599 ~ 29280833 (-)
G1436251 NA non-coding upstream 266609 29290269 ~ 29292004 (-)
G1435467 NA other downstream 473148 28547273 ~ 28547556 (-)
LOC110495156 LOC106564766 other downstream 653463 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 other downstream 691827 28328130 ~ 28328877 (-)
G1435199 LOC106587683 other downstream 820022 28189019 ~ 28200682 (-)
G1435257 NA other downstream 838143 28181042 ~ 28182561 (-)
G1436694 NA other upstream 588592 29612252 ~ 29612608 (-)
LOC110495137 LOC106564911 other upstream 914666 29926378 ~ 29979179 (-)
G1437411 NA other upstream 1026942 30050602 ~ 30114123 (-)
G1437507 NA other upstream 1217790 30241450 ~ 30243706 (-)
G1437609 NA other upstream 1443663 30467323 ~ 30468772 (-)

Expression


Co-expression Network