LOC110495135 (LOC106564922)


Basic Information

Item Value
gene id LOC110495135
gene name LOC106564922
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 29524398 ~ 29683158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949663.1
CCCAAAAGCACTCGCGTGGAAAGGAGGTTGAGTAAAGCCCTCAAAGGATACGGGAGGACAAACGCTCTAAGGCGCATTAGTTCATTGCTTTCTTCGGAGAGGAAAGGCACCCAATAGACTTCGTTCTCTGAGTGTACATATTGGGAACAGGGATTTTGGAGACCAAGTTGCACTGATTCGGTCTAAATTTTCTTCCACATCTGCTTTGAGGAATGCTGCCCTAATACGCGGCAGACCATATCGTTCCAGTTACCCGGACAATCTGCAGCGACTAAAAtcgggattttttttttaaatttgcaaAGTGACATAATGCAATCTAAAACGTAGGATTAAAAACACAGACTTCGCTCAGATTTCAAGAAGTCAGAACTCTCGTTTAAGATACTGTTCGCGGATTCAATTAAACGAAAACTTATGGATAAAATCTCACATCTGACTATTTTCTGGGAGTTGAACCCCTAAAACGTTGAATCCCTAAAACGCAGGCGGCGTGCAGCAGTTTCAGCACCTAGTTGAGGCCCAGGTTGCGAGGTTAACGATGTCGGGGGTCGCTTGTTTGGTTGCGTGTTTTGGGAAATGATTACTGGCAACATCGACGGTAAAATAATGGTTAGAAGATGGCTTGTGACGTTCAAACCTTTCAGgATATTTGTGGTGGGGATCGGCTTCTTCAGCCTGTGTTTTCTAATGACCTCCCTGGGGGGCCAGTTCTCAGCCAAGAGGCTTGGGGACTCCCCCTTCACCATCCGGACAGAAGtgaTGGGGGGAGTGGAGTCTCGTGGGGTGCTTAGGAAGATCAGTGACATGCTGGAGGTGATCCTGAAGAGGATGGACAGCCTCTCCAAACTGGACAACAGCACCACCAGCGACACCCGCCGTCTGAATGAACTCAGCTCGGCCATCAACAGgttccAGCCAGCAGGCCTGGTAGAGAGGATCCAGGCTATAGCTCAGAACGTGTCCAACATGGCGGTCAGAGTGGAACAGATCCTCCAGAACAGCATGGCCGCCGGCAGAGCAGTGAGAGACGGCTCCTCAGGCCAATGTGAGGTACCCAGAGACCCCCACTACCCAGACTGCCCTGGAAAAGTCGATTGGATGCGTGCCCGCTGGACGTCAGACCCCTGCTATGCCTTCTACGGGGTGGACGGCTCCGACTGCTCCTTCCTTATCTACCTGAGCGAGGTGGAGTGGTTCTGCCCCCCTCTGGCCTGGAGGAACCACAGCAGCCCCCCcaccgtccacacacacacacaccagaccaccaccaccaagagacagGCTGCATTCCGCACAGACCTGTCATCTCTGCTAGACCAGGTTGGCACGGGCAAAGAGTCCCTGAGCTTCATGAAGCGCCGTATGAGGAGGCTGGCATCACAGTGGGGCACGGCTGCCCAGCGCCTCCACTCCAAGCTGCGCCAACGCTGGAGGGAACAGAAGAAGATCCTGGTGCACGTGGGCTTCCTGACAGAGGAGTCAGGGGATGTGTTCAGCCCCAAGGTCCTGAAGGGAGGTCCCCTGGGGGAGATGGTCCAGTGGGCCGACATCCTCACAGCCCTCCATGTTCTGGGACACAACCTCAAGATCTCCATGTCTGTTAAGGAACTGCAGGGATTTCTCGGGGTGCCCCCAGGCAGAGGGAGCTGCCCCTTGACAGGACCTCTGCCCTTTGACCTCATCTACACAGACTACCACGGCATGCAGCAGATGAAGCAGCACATGGGGCTTTCGCTCAAGAGACACAAGTGCCACATCCGTGTGATTGACACCTTCGGGACAGAGCCGGCCTACAACCACGAGGACTACGCCACCCTGCACGGCTACAGGACCAACTGGGGCTACTGGAACCTCAACTCCAGACAGTACATGACCATGTTCCcccacACTCCGGACAACTCGTTCATGGGCTTTGTGTCTGAGGAGCTGAACGACACAGAGAAGAGGAGCATCATGCAGAACAAGGTCAACAACATGGCTGTGGTTTACGGCAAGGAGGCCAGCATGTGGAAGCTCCAGCAGGGTAAGGAGGGTTTCCTCCAGATCCTCCACAGGTACATGGAAGTCCACGGGACGGTGTACTACGAGACCCAGCGCCCCCCCGAGGTGCCTGCCTACGTCAAGAACCACGGCCTGCTGCCCCAGCACGAGCTGCAGACGCTGCTCCGCAAGGCCAagCTCTTCATCGGGTTTGGTTTCCCCTACGAAGGGCCCGCCCCTCTGGAGGCCATAGCCAATGGGTGCATCTATTTGCAGCCCAAGTTCCACCCACCGCACAGCTCGCTCAATCACGAGTTCTTCAGAGGCAAGCCCACGTCTAGAGAGGTGTCATCCCAGCACCCGTATGCGGAGCAGTACATCGGGCGGCCCCACGTCATGACAGTAGACTACAACAACTCCCAGGAGTTTGACTCCGCCATCAGAGAGATCATGAGTACCAAGgTCGAGCCATACCTACCATATGAGTACACCTGCGAGGGAATGCTGGAGAGGGTACACGCCTACATACAGCATCAGgaCTTCTGTACCCCCGAGGCCCCTTTCCCTCCGgccaactcctcctcctccaagctGGGGATTAGTAGTCTAGGTAGCCCTGGGCCTCAATTTGTCCTGCTGCCCAACTCCAGTGCCCTAACCTGGGCCCCCGACGCCAGCGCCCCCTCTGCCTGGCCCCCTCTCAGCTCTCTGAGGCTGCTGGCGTCCCAGGAGGGCCAGTCGTGTGTTGAGGCCTGCCAGCGGGCCAACCTGGTGTGTGAGCCCGCGCTGTTCCGCTTCGTCAACAACAAGGAGGCCCTGCGCGGGTTAGAGGTGCAGTGTGAGGTGGTGGAGGCGGAGGTCAACCACGTGTTCCCGGCCTTCTCCGTCCTGCGCCGGGAGTGCAGCCTCCAGAAGGACCCCCTCCTCTACAGCTGTGCCGGCCACAGCCCCAAGTACCACCGCCTCTGCCCCTGCCGGGACTACCGCCGCGGCCAGGTTGCCCTCTGCCGAGACTGCTTATGAGGaggggccaggagtttttccaatGAACGCCTGACCCGGCaatgtggctaggaaaaactccaggcgCTCTAGTTATAGCCTATGAATTGTAGACTATAAACTATGGACTATAAGCTCAACCGGCCCTGGTTATAATGCTAGGAGAGGGGCTGGCTAAAACTGGGACCCCCCCCCAACTGGAAGACTTGGTTCAAAGCTTCCCACTGAGCTTGAGTGGGTTGTTGTCCCATAGTCACCCCCCCTCCTTAATTTCTTGGTTTCTAAATTGACTAATATGTTTCTGATATGAGCCTATGGATGGTTTGCCTCAAAGCTCCTCACTGGCCTAAGAGAGATGTGCTGGACTATACTGCAACAAGTATATCCGTTCACCATGTGGCCACAGGAAAACACAGTAATCCACAATAGGGAAAAGGCTATATCAccatctagctagctacctaactaaTACCTAGAGGAGACCACTGACCGGAAGATCATTGATTTGCTGCTACAATATCAATAATTGGACTTTAACCCTCCAAGACCAGGGAGTTAAGAGAGCAATCGACCTGGGGAAGAAAACAGTTAACACAATGTGTGTCAAACTCCTAGAAAAAGTGACCTTTGAGTGGAATTCCACCTTTGGGTCAATaaccctctcacctcctctctttgGCGTTGTGCTTTGGCAATAGATGATGGACACTCAGACTCTCTCCTTTTAAAGATGAACTCTTTCTTTTGTGCGACTAAGATAACCCTGGCTGCCAACGTAGTCAATGCAATCATCTCTGTTGCGCTAAAATGGACTAAAACAGATGAAAGATTATTTTTTAATAAAGTGAACGTTTTGAGCTCTGCTACTGCGAGAACAGAGGATTTTTAAGAACCTTTCGGTGGTTTTGTGACGGAAATAAAAACGGAAAGTTGAAAAGAGA
>XM_036949664.1
CCCAAAAGCACTCGCGTGGAAAGGAGGTTGAGTAAAGCCCTCAAAGGATACGGGAGGACAAACGCTCTAAGGCGCATTAGTTCATTGCTTTCTTCGGAGAGGAAAGGCACCCAATAGACTTCGTTCTCTGAGTGTACATATTGGGAACAGGGATTTTGGAGACCAAGTTGCACTGATTCGGTCTAAATTTTCTTCCACATCTGCTTTGAGGAATGCTGCCCTAATACGCGGCAGACCATATCGTTCCAGTTACCCGGACAATCTGCAGCGACTAAAAtcgggattttttttttaaatttgcaaAGTGACATAATGCAATCTAAAACGTAGGATTAAAAACACAGACTTCGCTCAGATTTCAAGAAGTCAGAACTCTCGTTTAAGATACTGTTCGCGGATTCAATTAAACGAAAACTTATGGATAAAATCTCACATCTGACTATTTTCTGGGAGTTGAACCCCTAAAACGTTGAATCCCTAAAACGCAGGCGGCGTGCAGCAGTTTCAGCACCTAGTTGAGGCCCAGGTTGCGAGGTTAACGATGTCGGGGGTCGCTTGTTTGGTTGCGTGTTTTGGGAAATGATTACTGGCAACATCGACGGTAAAATAATGGTTAGAAGATGGCTTGTGACGTTCAAACCTTTCAGgATATTTGTGGTGGGGATCGGCTTCTTCAGCCTGTGTTTTCTAATGACCTCCCTGGGGGGCCAGTTCTCAGCCAAGAGGCTTGGGGACTCCCCCTTCACCATCCGGACAGAAGtgaTGGGGGGAGTGGAGTCTCGTGGGGTGCTTAGGAAGATCAGTGACATGCTGGAGGTGATCCTGAAGAGGATGGACAGCCTCTCCAAACTGGACAACAGCACCACCAGCGACACCCGCCGTCTGAATGAACTCAGCTCGGCCATCAACAGgttccAGCCAGCAGGCCTGGTAGAGAGGATCCAGGCTATAGCTCAGAACGTGTCCAACATGGCGGTCAGAGTGGAACAGATCCTCCAGAACAGCATGGCCGCCGGCAGAGCAGTGAGAGACGGCTCCTCAGGCCAATGTGAGGTACCCAGAGACCCCCACTACCCAGACTGCCCTGGAAAAGTCGATTGGATGCGTGCCCGCTGGACGTCAGACCCCTGCTATGCCTTCTACGGGGTGGACGGCTCCGACTGCTCCTTCCTTATCTACCTGAGCGAGGTGGAGTGGTTCTGCCCCCCTCTGGCCTGGAGGAACCACAGCAGCCCCCCcaccgtccacacacacacacaccagaccaccaccaccaagagacagGCTGCATTCCGCACAGACCTGTCATCTCTGCTAGACCAGGTTGGCACGGGCAAAGAGTCCCTGAGCTTCATGAAGCGCCGTATGAGGAGGCTGGCATCACAGTGGGGCACGGCTGCCCAGCGCCTCCACTCCAAGCTGCGCCAACGCTGGAGGGAACAGAAGAAGATCCTGGTGCACGTGGGCTTCCTGACAGAGGAGTCAGGGGATGTGTTCAGCCCCAAGGTCCTGAAGGGAGGTCCCCTGGGGGAGATGGTCCAGTGGGCCGACATCCTCACAGCCCTCCATGTTCTGGGACACAACCTCAAGATCTCCATGTCTGTTAAGGAACTGCAGGGATTTCTCGGGGTGCCCCCAGGCAGAGGGAGCTGCCCCTTGACAGGACCTCTGCCCTTTGACCTCATCTACACAGACTACCACGGCATGCAGCAGATGAAGCAGCACATGGGGCTTTCGCTCAAGAGACACAAGTGCCACATCCGTGTGATTGACACCTTCGGGACAGAGCCGGCCTACAACCACGAGGACTACGCCACCCTGCACGGCTACAGGACCAACTGGGGCTACTGGAACCTCAACTCCAGACAGTACATGACCATGTTCCcccacACTCCGGACAACTCGTTCATGGGCTTTGTGTCTGAGGAGCTGAACGACACAGAGAAGAGGAGCATCATGCAGAACAAGGTCAACAACATGGCTGTGGTTTACGGCAAGGAGGCCAGCATGTGGAAGCTCCAGGGTAAGGAGGGTTTCCTCCAGATCCTCCACAGGTACATGGAAGTCCACGGGACGGTGTACTACGAGACCCAGCGCCCCCCCGAGGTGCCTGCCTACGTCAAGAACCACGGCCTGCTGCCCCAGCACGAGCTGCAGACGCTGCTCCGCAAGGCCAagCTCTTCATCGGGTTTGGTTTCCCCTACGAAGGGCCCGCCCCTCTGGAGGCCATAGCCAATGGGTGCATCTATTTGCAGCCCAAGTTCCACCCACCGCACAGCTCGCTCAATCACGAGTTCTTCAGAGGCAAGCCCACGTCTAGAGAGGTGTCATCCCAGCACCCGTATGCGGAGCAGTACATCGGGCGGCCCCACGTCATGACAGTAGACTACAACAACTCCCAGGAGTTTGACTCCGCCATCAGAGAGATCATGAGTACCAAGgTCGAGCCATACCTACCATATGAGTACACCTGCGAGGGAATGCTGGAGAGGGTACACGCCTACATACAGCATCAGgaCTTCTGTACCCCCGAGGCCCCTTTCCCTCCGgccaactcctcctcctccaagctGGGGATTAGTAGTCTAGGTAGCCCTGGGCCTCAATTTGTCCTGCTGCCCAACTCCAGTGCCCTAACCTGGGCCCCCGACGCCAGCGCCCCCTCTGCCTGGCCCCCTCTCAGCTCTCTGAGGCTGCTGGCGTCCCAGGAGGGCCAGTCGTGTGTTGAGGCCTGCCAGCGGGCCAACCTGGTGTGTGAGCCCGCGCTGTTCCGCTTCGTCAACAACAAGGAGGCCCTGCGCGGGTTAGAGGTGCAGTGTGAGGTGGTGGAGGCGGAGGTCAACCACGTGTTCCCGGCCTTCTCCGTCCTGCGCCGGGAGTGCAGCCTCCAGAAGGACCCCCTCCTCTACAGCTGTGCCGGCCACAGCCCCAAGTACCACCGCCTCTGCCCCTGCCGGGACTACCGCCGCGGCCAGGTTGCCCTCTGCCGAGACTGCTTATGAGGaggggccaggagtttttccaatGAACGCCTGACCCGGCaatgtggctaggaaaaactccaggcgCTCTAGTTATAGCCTATGAATTGTAGACTATAAACTATGGACTATAAGCTCAACCGGCCCTGGTTATAATGCTAGGAGAGGGGCTGGCTAAAACTGGGACCCCCCCCCAACTGGAAGACTTGGTTCAAAGCTTCCCACTGAGCTTGAGTGGGTTGTTGTCCCATAGTCACCCCCCCTCCTTAATTTCTTGGTTTCTAAATTGACTAATATGTTTCTGATATGAGCCTATGGATGGTTTGCCTCAAAGCTCCTCACTGGCCTAAGAGAGATGTGCTGGACTATACTGCAACAAGTATATCCGTTCACCATGTGGCCACAGGAAAACACAGTAATCCACAATAGGGAAAAGGCTATATCAccatctagctagctacctaactaaTACCTAGAGGAGACCACTGACCGGAAGATCATTGATTTGCTGCTACAATATCAATAATTGGACTTTAACCCTCCAAGACCAGGGAGTTAAGAGAGCAATCGACCTGGGGAAGAAAACAGTTAACACAATGTGTGTCAAACTCCTAGAAAAAGTGACCTTTGAGTGGAATTCCACCTTTGGGTCAATaaccctctcacctcctctctttgGCGTTGTGCTTTGGCAATAGATGATGGACACTCAGACTCTCTCCTTTTAAAGATGAACTCTTTCTTTTGTGCGACTAAGATAACCCTGGCTGCCAACGTAGTCAATGCAATCATCTCTGTTGCGCTAAAATGGACTAAAACAGATGAAAGATTATTTTTTAATAAAGTGAACGTTTTGAGCTCTGCTACTGCGAGAACAGAGGATTTTTAAGAACCTTTCGGTGGTTTTGTGACGGAAATAAAAACGGAAAGTTGAAAAGAGA

Function

NR:

description
PREDICTED: alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B-like isoform X4

GO: NA

KEGG:

id description
K09661 MGAT5B; mannosyl alpha-1,6-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949663.1 False 3926 mRNA 0.54 18 29524398 29683158
XM_036949664.1 True 3923 mRNA 0.54 18 29524398 29683158

Neighbor

gene id symbol gene type direction distance location
LOC110493664 NA coding downstream 86998 29435134 ~ 29437400 (-)
LOC118940393 NA coding downstream 91513 29423991 ~ 29432885 (-)
LOC110493663 LOC106564923 coding downstream 102070 29368440 ~ 29422328 (-)
LOC110495134 LOC106588153 coding downstream 160385 29336006 ~ 29364013 (-)
LOC110493661 LOC106564921 coding downstream 258631 29075350 ~ 29265767 (-)
LOC110493666 kpra coding upstream 140881 29824039 ~ 29849081 (-)
si:dkey-45d16.4 LOC106588570 coding upstream 166103 29849261 ~ 29852422 (-)
LOC110495137 LOC106564911 coding upstream 247763 29926378 ~ 29979179 (-)
LOC110493672 LOC106564910 coding upstream 305133 29988291 ~ 30027542 (-)
acox1 LOC100380782 coding upstream 344823 30027981 ~ 30057047 (-)
G1436638 NA non-coding downstream 2895 29520977 ~ 29521503 (-)
G1436616 NA non-coding downstream 42635 29481304 ~ 29481763 (-)
G1436605 NA non-coding downstream 62937 29461140 ~ 29461461 (-)
G1436731 NA non-coding upstream 2533 29685691 ~ 29685960 (-)
G1436742 NA non-coding upstream 15150 29698308 ~ 29698534 (-)
G1436747 NA non-coding upstream 19087 29702245 ~ 29702518 (-)
G1436749 NA non-coding upstream 22595 29705753 ~ 29710169 (-)
G1436752 NA non-coding upstream 29531 29712689 ~ 29712900 (-)
G1435467 NA other downstream 976842 28547273 ~ 28547556 (-)
LOC110495156 LOC106564766 other downstream 1157157 28366452 ~ 28369020 (-)
LOC110493621 LOC106564766 other downstream 1195521 28328130 ~ 28328877 (-)
G1435199 LOC106587683 other downstream 1323716 28189019 ~ 28200682 (-)
G1435257 NA other downstream 1341837 28181042 ~ 28182561 (-)
G1437411 NA other upstream 367444 30050602 ~ 30114123 (-)
G1437507 NA other upstream 558292 30241450 ~ 30243706 (-)
G1437609 NA other upstream 784165 30467323 ~ 30468772 (-)
LOC110493700 LOC106564887 other upstream 1049031 30731077 ~ 30781553 (-)

Expression


Co-expression Network