LOC110495157 (LOC106564973)


Basic Information

Item Value
gene id LOC110495157
gene name LOC106564973
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 29793566 ~ 29795426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570487.2
ATGGTATCGCCCAGCAGTCTCCTGTCTGAAGAGCAGTTCCAGTGCGCTATCTGTCTGGATGTGTTTACTGACCCAGTCTCCATCCCGTGTGGACACAACTTCTGCAAGGCCTGTATCAAAGGATACTGGGATAGCACAGATCTGTGCCAGTGTCCCCTGTGTAACAAGATATTCCACAGAAGACCTGAACCAGATGTCAACAGAACACTCAAAGGAGTTGCGGAGCATTTCAAGGGattgagagtgagagacagagaggattcCGCTGCAGAGCCCGGAGAAGTGGTCTGTGATGTCTGCACTGGCAGGAAGCGCAAGGCTCGGAAGTCCTGCCTTATTTGTCTGACCTCGTACTGTGACACTCATCTGGAGCATCATCAGATAGCCCCAGCCCTGAAGAGACACCAACTGATCGACCCTGTAAAGAACCTTGAAGACAGGGTATGTAAGAAACACAACAAACTCCTCGAGCTGTTCTGTCGGACTGACCAGACATGTGTGTGTCAGTTCTGCTCAGAGACTGACCACAAGGCTCACAACAGCATACCTCTGGAAGATGAATGTGACCAAAGGAAGGCTCAGCTTGGGAAGACAGAAGCAAAAGTGAAGCAGATGATTCAGGAGCATCTGCAGAAGGTCAAGGAGATCAAACACTCAGTAGATCTCAGCAAGAGACACACTGAGATGGATATATTTGGCAAAGTGCAGGTTTTCACCGCTCTAGTTCACTCCATTGAGAAATTTAAGGCTGAGCTCATTGGTGTGGTTGAGCAGAAGCAAGAAGCTGTGGACAGGTGGGGTGAAGGTCTTATTAAAGAACTGGAGAAAGAAATCACTGAGCTGAAGAGGATAAGCTCTGAGCTGGGGCAGCTCTCACACACTGAGGACCATCTCCAACTCCTCCAGAGCTCCCCATCCTGGTGTCTCCCAGTGAAGACCAAtaactggtctgagatcagtgtTCAAAGCCACCTGCGCATGGGGTACATGAAAAGAGCTGTATCTCAGCTGGAGGACAAACTGATGAGTAAGGTAAAGCGATTTCATAATGAGATGGAGAATGAGCTGAGGACATTGTGTGAAGCTAAGACAAAGAAGATTCAGCAGTATGCAATGAATGTGACTCTGGACCCTGATACAGCACATCCGGAACTAACCCTCTCCGTGAATGGGAAACAAGTGAGGTGTGGGGATCAATCACAGAATTTCTTGAGGAACCCAAAGAGGTTTACTTATACATACAGTGTCCTGGGGAAGGAAGGGTTCTCCTCAGGGAAATCTTACTTTGAGGTACAGGTGAAGGGGAAGACTGAATGGGATTTAGGAGTGGCCACTGAGTCGATCAATAGGCAGGGGTGGTTACCACTGAGCCCTGAGGATGGACTCTGGACTTTTGGCCTGGATACAGATAATGACTACGTGCCTAATGACCCCAAAGTACACTACTACCTGAAAAAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCGGGTCTCCATTTATGATGTGGATGCCACAGCCAGATCTCACATCTGCTCTTTCACTGGCTACAAATTCACTGAGAAACTCTATCCATACTTCCACTGTGGGTATCCTGATGGTAAAAGAAACATAGCTCCACTGGTCATCTCTCCTGTCAGTCACATGACTGGCCCAGTGCTCGGGGTGTGAGTCGATATAAACAAATAGTTGCTTGTTTTTTTTTAGGATGAGGATACAGTGACTTAGTAATTCTGGCCTTCATTCCTGTATATTGTGTGTACTCTGATGTAGCTAATCTCAAGGTATAAATGTATCAATGCAACTGTTTCTCTCATTTTTcttgtgaaaataaagaaaaagtacTGTA

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570487.2 True 1861 mRNA 0.47 1 29793566 29795426
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493665 LOC106564917 coding upstream 36728 29718703 ~ 29756838 (+)
trnaa-ugc-130 NA coding upstream 265371 29528122 ~ 29528195 (+)
LOC110493662 LOC106564925 coding upstream 503368 29285360 ~ 29290198 (+)
LOC110493657 LOC106564932 coding upstream 767073 29022435 ~ 29026838 (+)
LOC110493652 LOC106564933 coding upstream 793735 28987773 ~ 28999831 (+)
LOC110493668 LOC105021619 coding downstream 23513 29818939 ~ 29820743 (+)
cygb2 LOC106564914 coding downstream 63211 29858637 ~ 29868058 (+)
LOC118940394 NA coding downstream 76565 29871991 ~ 29880729 (+)
LOC110493671 LOC106564913 coding downstream 105382 29900808 ~ 29926149 (+)
LOC110495138 NA coding downstream 261627 30048246 ~ 30058516 (+)
G1436803 NA non-coding upstream 16650 29776253 ~ 29776916 (+)
G1436760 NA non-coding upstream 33858 29757733 ~ 29759708 (+)
G1436552 NA non-coding upstream 77945 29715399 ~ 29715621 (+)
G1436542 NA non-coding upstream 97692 29695532 ~ 29695874 (+)
G1436535 NA non-coding upstream 107146 29686215 ~ 29686420 (+)
G1436811 NA non-coding downstream 810 29796236 ~ 29796485 (+)
G1436813 NA non-coding downstream 2182 29797608 ~ 29798063 (+)
G1436821 NA non-coding downstream 14899 29810325 ~ 29810728 (+)
G1436826 NA non-coding downstream 26281 29821707 ~ 29821972 (+)
G1436830 NA non-coding downstream 27101 29822527 ~ 29822828 (+)
G1436554 NA other upstream 76262 29717068 ~ 29717304 (+)
LOC110493649 LOC106588056 other upstream 943035 28848883 ~ 28853257 (+)
LOC110495133 LOC106564943 other upstream 985667 28803282 ~ 28810516 (+)
G1435540 NA other upstream 1128587 28664354 ~ 28664979 (+)
G1436829 kpra other downstream 34121 29826664 ~ 29849053 (+)
G1436967 NA other downstream 238474 30033900 ~ 30038063 (+)
LOC110493688 LOC106564992 other downstream 595275 30390554 ~ 30395746 (+)
G1437183 LOC106564893 other downstream 615317 30410743 ~ 30414934 (+)
G1437734 NA other downstream 869745 30665171 ~ 30666007 (+)

Expression

LOC110495157(LOC106564973) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 1.
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LOC110495157(LOC106564973) Expression in each Bioproject

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LOC110495157(LOC106564973) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 4.
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Co-expression Network