XLOC_033252 (znfx1)


Basic Information

Item Value
gene id XLOC_033252
gene name znfx1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 57401178 ~ 57426097 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064554
ATGTCTACTGTCCTGTTGATGTGTGTTCAGATGCAAGGCCACCAGAAGAAAAAACTCCGGCAAATGGCTCGAAAAGAGCTAAAGAAAACTTCAGCCATGAGTGAGAAGGAAGAAAGGCGGATCAGGGACGTTTGGAGCCTGAGTCTGAAGGACAGATGGAAACTGTATcgGCTCTGGGTTTTGCGCTATCGCAGTGATCTCCGCACTAAAGCTCTTGCTTCTGAACAAGTGTATCAGGAGGCGGCGGAGCGTCTGAATGAAATCCGCCGTCATGAGGACCTGTCTGTGCTGCGGCAGGCGCGGGTTGTGGGAATGACCACCACTGGAGCTGCTAAATACAGGCAGGCTCTTCAGCAGCTGCAGCCCAGGCTGGTGATTGTGGAGGAGGCAGCAGAAGTGCTGGAGGCGCACACCATTACCACACTCAGCAAAGCCTGCCAGCATCTTATACTGATCGGAGACCACCAGCAGCTGAGGCCTAGTGCAACAGTGTATGAACTTGCCAAGAATTTCAGTCTGGAAGTGTCCATGTTTGAGAGACTTGTCAGAGTGAACTTCCCATTCGTGCGCCTCAACTACCAGCATCGCATGAGGCCAAGTATCGCTCGCCTGTTGACTCCTCATATATACTCATCTCTGGAAAACCATCCCTCTGTGCTGAAGTATGACAATGTCAAGGGAGTTCTTACAAATCTCTTTTTCGTGGATCACATTCAACCTGAAGAAGAGATTAAAGATGGACGGAGCCACCAGAACCCACACGAAGCTCGTTTTGTGGTCGAGCTTTGTCAGTATTTGCTGTTCCAGGACTATAAGCCTTCCCAGATTACCATTCTGACTACATACACCGGACAGCTTCACTGTCTGCGTAAGCTCATGCCCTCTCCAAAGTTCTCTGGCGTCAAGGTCCATGTTGTTGACAAGTATCAAGGAGAGGAGAACGATATTATTATATTGTCCCTAGTGCGCAGCAATCCTCAAAGGAGGGTGGGCTTCCTGAACATACCCAACCGTGTCTGCGTTGCGCTTTCTCGAGCTAAAATGGGTCTGTATTGTATTGGAAATATGGACATGCTCAGCTCGGTTACACTATGGAGCAACATCATTCACACTCTGAGAGAGCATGATCAAGTGGGACCAGCTTTGACACTGAGCTGTCAGAACCATCCAGATAAACAGATCCACGCATCTTGCGGTAATGACTTCAAAGGTGCCCCTGAAGGTGGTTGCGATCAACCCTGTCAGTATCGTCTGGACTGTGGCCACGTGTGCACCCGTATGTGCCACCCATATGATGCCGAACACAAGGAATACAAGTGCATGAAGGACTGCTCAAAGGTGCTGTGCGAACTGGGCCACAAATGCACACGTCGCTGTCACCAAGAATGCGGCAAATGCATGGTATCTGTAGATAAGATAATACCATCATGCCAGCACAATCAGAAGGTGCCTTGCCACAAAGATCCTGCAGAATTCGTGTGTCAAGTACGATGCGAAAAGACTCTTCCATGTGGGCATCCTTGCAAGGCGACCTGTGGAGAGTCCTGCACCTCTCAGTGCATGGTGAGAGTTCCGATAGAGCTGAAATGTGGACACATGCAAGAAGAACCATGCTTTGTTTCTAGGGATCACAAAAATGAGCCAAGATGTAACACCAAATGTGGTACTGTCTTAAAATGTGGCCATTCTTGTCCAGGAACGTGCAATGGATGCCATCAAGGTCGTCTTCATAAAGCATGCACCCACAAATGCCAGCAAATCCTAGTGTGTTCCCATGAGTGTCGGGAGCCTTGCGTAAGGGATTGTCCACCTTGTTCCTCTCGCTGCCAGAACCGCTGTGTTCACAGCGAGTGCAAGAAGACTTGCGGTCAGTCTTGTGCTCCTTGCAGGGAACCCTGTGCATGGCAGTGTCCTCATCACAGCTGCACCAAACTGTGTCACGAACCATGTGATCGTCCACCTTGTTCTGTTCCCTGTAACAAGACCTTGACCTGCGGACACCGCTGCATAGGTCTGTGTGGAGAGCCTTGTCCCAATAAGTGTAGGGTTTGTCATAAAGAAGAGGTCACGGAGATCTTCTTCGGCAGTGAGGATGAACCAGACGCTTGTTTCATTCAGCTTGAAGACTGCAAGCACTTGTTTGAGGTCACAGGAATGGATCAATACATGAATCTTGATGAGGATCAAGGTGCTGAATTGGATCAAAGGGCGATCCGACTTAAGGACTGTCCTAGGTGTCGTACTCCCATCCGAAGAAACCTTCGATACGGCACTCACATCAACCGCAGTCTAGCAGCCATCGAGATGGTCAAGGAGAAGATCAATGGTGTGCCAGACATTATCAAGCAACAGCAGGATGTCCTTAGCTTGGTATTGAATGATAAGACAAACTTGAAAAAGTATCTTCCTGACAAGTTTGTCTCACTTCAAGAGAAGCTTGACACAAATGTCCTTTCAATCCAGCAACTCTGGCATCTCGAGAACTTGATGAATTTCCTTGAGAGTGTTGGAAAACTGAAAGCAACACAGGTCAAACATGAGAATCCCGCTCAGAGGTTTTCAGAGCAGCAGGTTGCAGATCTCGGGCGTGAGTTGAAGAGACTGTCCTACCTGGCTGAACTCAACGAACGCTGCAGGATGTCTCGGTTTAAATCTCCAGAGGTTGTTCTTGGCACTGAAGTCCAACACCTAAGAGGCATCCTGGAGGACACCTTACCTTTCTCTGAGGGTCTGGAGCGTACAGTCCAACAGATGTTTACAAAGCTGGATGTCATACTGCCACGCAGTGGCCTGGGCATCACTGAAGAGGAGAGGGTGATGATAGTCCAAGCCGTCGGTTTGAATAAAGGCCATTGGTACAAATGTCCTAACGGCCATGTCTATGCTATCGGTGAATGTGGGGGTGCTATGGAAAAAACCAAATGTCCTGAATGCCATGCAGAAATTGGAGGCTCTAATCATGCACTTACTCAGGGAAATGCTGTGGCGTCAGAAATGGACGGTGCACAACATCCTGCCTGGTCAGATGCTGCCAACATGGCAAACTTTGACCTGGATAACTTTGAAGATTGA
>TCONS_00064555
ggaggaagaggaagaggaggtgGACGAGGAAGAGGAAGTGGAGGAGAAAGGGACGGAAGGGGTCGAGGTGATAGAAGTCACCAACACACTGGTGAAAGTACAAACAGCCTGTGGgaaagatggacagatggaaTAACTCAAAGTGCAAGAGGAAGAGATGGAAGAGGACAGAGGAAAGGGGAAAATAAGcaacatcatcagggaaatgCTGTCCACCGTCCTATAATAATGGGAGGTGCGACACATTTACCTTCACCTTACCAAGGGAAATTTGGGAGATCTCTTCCTGGGTTGATGCAATTAAACCTGACCCCATCTTCAATGCAACAACCCATGAATTCAAGACACGACCTTGAAGGCATGAGTCTCCAAAGAACAAGTGGAGGCATGAGTGATTTAAGAGCCAGTCCACAAGGTGAAGCACGAACAGAATCTCAAAGAGGTAGAGGTGGTCATTGGAGAGGAAGAGGGAGAGATGGCCCCCCTGAGGTACGCACACTTGGGTATAAAACACTTGAAGGTCTGCTTGAGAAAGAAGCATCCGAGGTGGCCATCACTCTTTCATCTAGCACTGGACTTAGGAATCTGCTTGAGGAAAAGGTGATGAGAAATGACTTGGTGCAGCTGGTCTGTCAGGTTCTCTGCAAGGCCTTCCAGTCTCGAATTGATCGTAATACAGTGATGCACTTGGCTCGTGTCGTCAAGGACTCTCAGTTTTTTCTTAGCATTCTGCCACATCATGTAACTGGAATGATGTCAGATTACATGCCAGCCCGAAGAGATCAGTATCCCCAGCATTTGAGCAACATCATCAGCCTTGTCTCTGATGTTCTCAACATGTTTCCACAAAGTTCTGTGCATTCCGTCTCCATGTTGGTGACTCTTTTGAAACCAACCATCAATCAATTGCGTGCCTCTGGTGTGGATGTTCTCGCCAATACTGATCAGGACTTGGAGAGGGTGCAAGGTTTGGTAAACCATCTCCAAGAGAAATCAAGGGAAGGCACCTTGCGCTCAGATAAATACTCATTCCTAACAGCTGATGAAGATGCCCCACCTGGGGAGGAAGACTTCAGGATGATGAGCATTTATCCCTCGTTTGAGGAGTTCCACCTTGATCAGAAGCCTTTCTTGAGGCCGAACATAATCTCTCAAAGTTTCCCTAATGCTCGGATTTATTTAGACACACACTTTCGACTTCTGCGTGAAGATTTTGTGAGGCCACTGCGGGAGGGTGTCAAGGAGCTTTTGAGGATACACCATACTGAGAAAACTAATGGAATACCAATGAAAAATAGGCAATTTGATGACATCAGGGTCTACTTTGACACCCGAGTGATTTTACCACTTTGCACATCAATGGGAATTGCCTACAAAGTGAAGTTTGACACAAGGCGCCTTCAGTTTGTCCGTTGGGAAAATTCCAAACGCCTGCTTTACGGATCCCTTGTCTGCCTCTCCATGGACAACTTCGAAACCTTCCTGTTTGCCACTGTAACCGATCGCGACCCAAAGCTACTGAGACAGGGAGAGGTGAATCTCTGTTTTTCTCCTGACAGCAGAGCCGCTCTGGCCAGGGTTCAGCCCTCAGACTCATTCCTGATGGTCGAGACAACGGCTTATTTTGAGGCCTACCGATATGTCCTAGAGGGTCTCCAGGAGCAAGATGAGAATGATGTTCCCTTTCAAAGGTACATTGTGGAATGCAAAACAGATGTAGATCCTCCAGCTTATCTCCTGGTGGAAGGAAGGTCATATGATCTGTCATGCATCGCAGCAGAAGGGCAGGGGAAGATTCCACCCTTCAATCCTTTGACCCAAAATGCCTGGCCTGATGAGGAAAAAATGGGTCTCGATGAAAGCCAACTTCAAGCACTTAAACTGGCCTTAACCAAAGAGTTGGCCATTATACAAGGACCACCAGGAACAGGCAAGACGCATGTAGGACTGAAGATAGCTCAGGCTTTGCTAAAGAACCACGAGGCCTGGTCAAATGGTTGCCCTATGCTGGTGGTCTGCTATACCAATCATGCTCTTGACCAGTTTCTGGAAGGTATCCATGGCTTCCTAAAAGATGGGATTGTGAGAGTTGGAGGACGAAGTAACAGTGAAACTCTGAAGCGTTTCGGTCTAAGAGAGTTGACCAGGTTCAAAGACTTCCGCAAAAATTTGCCGCAGCACCTGAGAAGAGCTCATCATGAAATCAGCAATAATATGCAGGAAGCAGAAACTCTTTTAAAGGCGCAGTCGGCTCAGCTTGAGTGCAGCTTGCGAGGCGTCCTCAAAGAAGACTTCTTGGAAAAGTACATCTCTGAACAGCACTGGCACAGTCTGTGTCTACAGCCTGGGCCACAACAAACAGATGGAGAAGTGGCGGAAGATGAAGACGGAGCTCAGCTGGAGGAAGAGGAGCTGATAGATATCGATGAAGAGGCAGATCTGATCCAGGCAGAGAGGATAGTGGTGGACGCTGAACACGGAGATAAAGACAAGTATAAGCTGAAAGTAGAAGAGAAGAACATCGCTGCCATGGCGGAGCTGATGCTGGCTTTAAACCTGAATGATGCTGAAGCACAGCCGGGCCAGAACCAGACACAGACTCACGGTCATGCTCAGGCTGATGAACAGGAATGGCAGATGCAAGGCCACCAGAAGAAAAAACTCCGGCAAATGGCTCGAAAAGAGCTAAAGAAAACTTCAGCCATGACTCTTGCTTCTGAACAAGTGTATCAGGAGGCGGCGGAGCGTCTGAATGAAATCCGCCGTCATGAGGACCTGTCTGTGCTGCGGCAGGCGCGGGTTGTGGGAATGACCACCACTGGAGCTGCTAAATACAGGCAGGCTCTTCAGCAGCTGCAGCCCAGGCTGGTGATTGTGGAGGAGGCAGCAGAAGTGCTGGAGGCGCACACCATTACCACACTCAGCAAAGCCTGCCAGCATCTTATACTGATCGGAGACCACCAGCAGCTGAGGCCTAGTGCAACAGTGTATGAACTTGCCAAGAATTTCAGTCTGGAAGTGTCCATGTTTGAGAGACTTGTCAGAGTGAACTTCCCATTCGTGCGCCTCAACTACCAGCATCGCATGAGGCCAAGTATCGCTCGCCTGTTGACTCCTCATATATACTCATCTCTGGAAAACCATCCCTCTGTGCTGAAGTATGACAATGTCAAGGGAGTTCTTACAAATCTCTTTTTCGTGGATCACATTCAACCTGAAGAAGAGATTAAAGATGGACGGAGCCACCAGAACCCACACGAAGCTCGTTTTGTGGTCGAGCTTTGTCAGTATTTGCTGTTCCAGGACTATAAGCCTTCCCAGATTACCATTCTGACTACATACACCGGACAGCTTCACTGTCTGCGTAAGCTCATGCCCTCTCCAAAGTTCTCTGGCGTCAAGGTCCATGTTGTTGACAAGTATCAAGGAGAGGAGAACGATATTATTATATTGTCCCTAGTGCGCAGCAATCCTCAAAGGAGGGTGGGCTTCCTGAACATACCCAACCGTGTCTGCGTTGCGCTTTCTCGAGCTAAAATGGGTCTGTATTGTATTGGAAATATGGACATGCTCAGCTCGGTTACACTATGGAGCAACATCATTCACACTCTGAGAGAGCATGATCAAGTGGGACCAGCTTTGACACTGAGCTGTCAGAACCATCCAGATAAACAGATCCACGCATCTTGCGGTAATGACTTCAAAGGTGCCCCTGAAGGTGGTTGCGATCAACCCTGTCAGTATCGTCTGGACTGTGGCCACGTGTGCACCCGTATGTGCCACCCATATGATGCCGAACACAAGGAATACAAGTGCATGAAGGACTGCTCAAAGGTGCTGTGCGAACTGGGCCACAAATGCACACGTCGCTGTCACCAAGAATGCGGCAAATGCATGGTATCTGTAGATAAGATAATACCATCATGCCAGCACAATCAGAAGGTGCCTTGCCACAAAGATCCTGCAGAATTCGTGTGTCAAGTACGATGCGAAAAGACTCTTCCATGTGGGCATCCTTGCAAGGCGACCTGTGGAGAGTCCTGCACCTCTCAGTGCATGGTGAGAGTTCCGATAGAGCTGAAATGTGGACACATGCAAGAAGAACCATGCTTTGTTTCTAGGGATCACAAAAATGAGCCAAGATGTAACACCAAATGTGGTACTGTCTTAAAATGTGGCCATTCTTGTCCAGGAACGTGCAATGGATGCCATCAAGGTCGTCTTCATAAAGCATGCACCCACAAATGCCAGCAAATCCTAGTGTGTTCCCATGAGTGTCGGGAGCCTTGCGGAACCCTGTGCATGGCAGTGTCCTCATCACAGCTGCACCAAACTGTGTCACGAACCATGTGA

Function

symbol description
znfx1 Predicted to enable RNA binding activity. Predicted to be involved in heterochromatin assembly by small RNA. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of nuclear RNA-directed RNA polymerase complex. Orthologous to human ZNFX1 (zinc finger NFX1-type containing 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031048 heterochromatin assembly by small RNA biological_process
GO:0031380 nuclear RNA-directed RNA polymerase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110804-2 Predicted to enable RNA binding activity. Predicted to be involved in heterochromatin assembly by small RNA. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of nuclear RNA-directed RNA polymerase complex. Orthologous to human ZNFX1 (zinc finger NFX1-type containing 1).

Ensembl:

ensembl_id ENSDARG00000100280

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064554 False 3072 mRNA 0.49 6 57401178 57408576
TCONS_00064555 True 4353 mRNA 0.48 14 57402373 57426097

Neighbor

gene id symbol gene type direction distance location
XLOC_033251 CABZ01034962.1 coding downstream 137533 57263510 ~ 57263645 (-)
XLOC_033250 NA coding downstream 278268 57108325 ~ 57122910 (-)
XLOC_033249 NA coding downstream 292990 56954940 ~ 57108188 (-)
XLOC_033248 cdh22 coding downstream 523812 56638688 ~ 56877366 (-)
XLOC_033247 CR388191.1 coding downstream 862053 56539009 ~ 56539125 (-)
XLOC_033253 ddx27 coding upstream 10217 57436314 ~ 57476465 (-)
XLOC_033254 snrpb coding upstream 52240 57478337 ~ 57485411 (-)
XLOC_033255 itcha coding upstream 65697 57491794 ~ 57539141 (-)
XLOC_033256 NA coding upstream 194808 57620905 ~ 57621869 (-)
XLOC_033257 CU693502.1 coding upstream 204317 57630414 ~ 57631164 (-)
XLOC_033245 NA non-coding downstream 782621 56330271 ~ 56618557 (-)
XLOC_033259 CABZ01087330.2 non-coding upstream 343445 57769542 ~ 57769658 (-)
XLOC_033260 NA non-coding upstream 361623 57787720 ~ 57790025 (-)
XLOC_033262 NA non-coding upstream 655538 58081635 ~ 58082635 (-)

Expression


Co-expression Network