LOC110493706 (LOC106585672)


Basic Information

Item Value
gene id LOC110493706
gene name LOC106585672
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 31256900 ~ 31277824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568123.2
TGTAGTCTGAGGCACACAGGCCCCCCTCAGTCGACACAGTCAGAGAAGGGAGAGGGCCGTGAAAACTAGGGCACAGCTAAACTGACCCCTTTCCCTCAAACTAGAGGCACAAAtccaacagagggagagagacaaagagtgaTAGGGTGTAggctggggaagagagagacatttgTGGACGGCTGTGTTGGCTGTTAAGGAGTGAAGCCCGCGAAAATCCACCACCGAAGCCTCCACAAGTTTGACGTCCCTTCAAGCGAGGACCTCGGTGCTACgcatttcttcttctttggacatCTTTTGGTCAGTGTTTCCACGTACAAACTACACCATGCACAAACGTACGAAGGTGAAGATCACGTTCTTTGTGATCCTGGTGGGTATGGCGTCCATGTTTACGGCGGTGGTGACGGACCATTGGGCCGTGCTGAGCCCGCGGGTGGAGCAGGTGAACGCGACGTGTGAAGCGGCCCACTTTGGCCTCTGGAGGCTGTGTAAGAAGGTCATCTACATCAGTGAGGCGGACTACAATGGAAAGGGTTGTGGCCCTATCAGCTTACCTGGAGCGGAGAACTGCACTTACTTCAAACACTTCACTCCAGGGGACGAGTCTGAGATTTTTGAAGTCAAAACCCAGAAAGAGTACAATATCTCGGCAGCGGCCATCGCCATCTTCAGCCTGGCCTTTATGATCCTGGGCACCTTGTGTCTCCTGTGCTCCTTCAAGAAGGGAAATGACTACATCCTTAAACCTGCCGGAATGTTCTTCGCTTTTGCAGGCCTGTGCGCCGTCATCTCAGTGGAGGTGATGCGTCAGTCGGTAAAGCGGATGATCGAGAGCGAGGACACCATCTGGATAGACTACTCCTACTCCTGGTCTTTTGCCTGTGCCTGCGCTGGCTtctgcctcctcttcctcagtGGCCTCGGCCTCCTCCTGCTCTCCATGCCCCGCATGCCCCAAAACCCCTGGGAGTCCTGCATGGACGCTGAACACGAAGTGGAGTAATAGacaaggagggatgagaggaggaagagtgacACTTTCTTTAAAAGCAATACGATCACGATCAACTTTGTGTCGTTCTATAGTGGAACCAGAGGGTTCTTTCACACAGTGCTTGGGAGCAGTCCAATGTACCGAATGAAAAATagaagttaaatgggtttccatcgcattttcgaCTCTAATGACGACAAAAAACTGTTGCATTATATAGCAAATGTGCCgatctggtcttggcacgtgccCTCTAGCCAACACgtcgcagatacagtgcgggtaggctacctacatttaaagattattatggataagagcgatacaatttttatttgtcaaatggcactTTCACCACCATGTGAATCTCATAACTTATTtagtctgtagcctaataaatggCATGCTTTCctgagtcatagtgggaggacaacacaacatacagtatcatcgcgtgactcccaagtttacttcgatatgatggttattaatATACATATTTGCAGATGAAGGCATTTCCACCACCGTTTCTCACATAATTCATTTCTGACACAAAAACATCCCACCATGTCCAACGAGCAAATTGTCTGTTTTATAAAATTGTAGAGGCATTTCCTCTTCCATCAGCCCAGTCGTGACTTTTTTCAAGTGTCAGGTAATTCATCAGCATGAAATGGTTGGTTGGAAACCTGGTTAATTATACATTTTGACATGTTATTTAATGGTATAAATAGTAATGGATTGACATTTGACCTATGCATTCACCTTTTCTGTACTGTGTGTTTTGTATGATAATTCTGTACATAAGTCAATCAATTTATAACTGAGATGGTTCTCCTGTTATTTTCAGTGCATCAAGCACTTGCATTGAATTTATGTCAAATTCAGGCAAGATTAAGCTAAACCAGGAAATTGTTAGAATCAGATTCCAAATTATTACATCATGATTAAGTATTTAATATTATTACAactcctttaaaaaaaagtattcacAGCATACATAACACTAATTGTGATGTAAAGAAGTGTTATCAAAATGATCAGTTTTAATTCTAGAATTTAGGTCATGTTAGACTTatagtgaaaaaatatatattttcagttTTCAAACAGACTTACTTTTATAAGAATAATACATGGGTGTGACAGTAAATTGGAGAAGCAAATAATGCTGTCTGGTGGGTTTAGTGTGCATACCAATCAGAATGCTTAACACCAACAGTCTCTGAACCACTGAATGTGTGGGTTGCCATGTTGGAAAAGGTTCAGTTCTAGCAGGTGTACACGAAATACTAAAAACCTCCCAACTTTAatttattgtaattattttttagAGCTGAGCACATGGCAGCCCAATTTCTTTGACTATTTGATCCCATTCAATTTAGGGGAACCAAGCGCTCTATTTTTAATCAAGGTATAATTTTCTGATTTTAGTTAGTGTCTGATGCATTTAACTTAGATCTCACAAGGTATTCAGTAGCCAACTCTTTCAGTTCAAATGGTCAGAGAAAAACTCAGAGCCTTAATATGTACCATCTAGATCCAGTATACggctttaatatatatatatattttttcctaaTGTCGTCTTTTCAGCCAAACTAAACTGGACTGCTCTCCCATGTTACCGTTCATCTTTGGCTTCTATGGACAGGCAGGAATTAGGTGTACATTATTTTTGTTATGGATGATGCTGCTTTTGTATTTACTCAGTGGAAGTGTTAAACTAGGATTCTTTTTGATACAGAAATGTACATTACTAGTGTCTCAAAACAAGCTTGAGCTAAGACCATTACTTTCCCCATTTGATATTTGATTGAATAGATGAGGGCAGTTGATAAAGGTATTGGCACTATCGTACTTAAACGCTACATAAGACCTCATGAATGTAGCAGATTAAAACTTGCTTAGCCATGTCATCTGTCCTTGCCTGTTAGAACTAGCTTTTGGTATGCAATGATGGATTACAGTGGAGTGGTTGTCTTTAGCTCTGTGTACATGTTATAACCATAAAACCATGCATTTCTAATGAAAATAAATTCACTGATATCTAGCTTTGATGAAA

Function

NR:

description
voltage-dependent calcium channel gamma-1 subunit-like

GO: NA

KEGG:

id description
K04866 CACNG1; voltage-dependent calcium channel gamma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568123.2 True 3068 mRNA 0.42 4 31256900 31277824

Neighbor

gene id symbol gene type direction distance location
LOC110493705 LOC106564880 coding upstream 11317 31214930 ~ 31245583 (+)
LOC110493704 LOC106585659 coding upstream 58178 31166302 ~ 31198722 (+)
LOC110493701 LOC106564882 coding upstream 96213 30943491 ~ 31160687 (+)
LOC110493692 LOC106564892 coding upstream 732380 30494128 ~ 30524520 (+)
LOC110493688 LOC106564992 coding upstream 861154 30390554 ~ 30395746 (+)
LOC110493710 LOC106564871 coding downstream 75658 31353482 ~ 31433958 (+)
LOC110493711 nol11 coding downstream 157622 31435446 ~ 31445610 (+)
LOC110493161 LOC106564864 coding downstream 171192 31449016 ~ 31502058 (+)
LOC110493714 LOC106564868 coding downstream 236912 31514736 ~ 31519569 (+)
LOC118940650 NA coding downstream 238484 31516308 ~ 31516435 (+)
G1438144 NA non-coding upstream 1799 31254849 ~ 31255101 (+)
G1438143 NA non-coding upstream 3278 31253399 ~ 31253622 (+)
G1438140 NA non-coding upstream 6560 31250036 ~ 31250340 (+)
G1438135 NA non-coding upstream 23850 31232789 ~ 31233050 (+)
G1438186 NA non-coding downstream 35972 31313796 ~ 31315154 (+)
G1438195 LOC106585679 non-coding downstream 46471 31324295 ~ 31324552 (+)
G1438197 LOC106564877 non-coding downstream 47788 31325612 ~ 31325911 (+)
G1438198 NA non-coding downstream 48908 31326732 ~ 31326991 (+)
G1438199 NA non-coding downstream 49809 31327633 ~ 31329125 (+)
G1437911 LOC106564885 other upstream 323316 30927247 ~ 30933584 (+)
G1437734 NA other upstream 590893 30665171 ~ 30666007 (+)
G1437183 LOC106564893 other upstream 841966 30410743 ~ 30414934 (+)
G1436967 NA other upstream 1218837 30033900 ~ 30038063 (+)
G1438880 NA other downstream 424670 31702494 ~ 31705164 (+)
G1438941 LOC106564856 other downstream 628698 31906522 ~ 31907498 (+)
LOC110493164 LOC106564854 other downstream 695616 31973440 ~ 31976221 (+)
ero1b LOC106586106 other downstream 1095791 32352949 ~ 32378308 (+)
rbm34 LOC106564828 other downstream 1322412 32562173 ~ 32662021 (+)

Expression

LOC110493706(LOC106585672) Expression in all Baseline Samples

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LOC110493706(LOC106585672) Expression in each Bioproject

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LOC110493706(LOC106585672) Expression in each Sample
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Co-expression Network