XLOC_033253 (ddx27)


Basic Information

Item Value
gene id XLOC_033253
gene name ddx27
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 57436314 ~ 57476465 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064556
ACGTGTGTTTACGAACATGCAGCACCGATAGTGTGTCAATGTTTGTGGTTTATTAAACTGTACGATcagatttgttttttatacatACACATGTAGGTAAAGATATAGACTCTGCACACTATCAACTGTATCATAACTTTAACCAGCCTGTAAAGTTTGTTAAGGCGCCTCAGCGCAGTCGTTTTCAGACATGGATCTGATCAGAActattgatgatgatgaagaggtcCCAGAAGAGCCGGATTCAGGATCTGATGATGAAGCTGATCAGCCCATCGTGTTGAAGAGTAAAGAGAAGCAGGCTCTGAAGGCCCGCGGCTCAGGACACTTCAATGCAGACTTTGATTTTGGCGAGCGGGATGGCCTGTACAGCGCTGACTGGGCCATGGCGGATGTGATGGCGCAGCTGAAGAAGAGGAAAGCACCCACAACCTTGGATGAGAAGATTGAGAAAGTGCGGAAGAAGCGTAAAGTTGAGGAGAAATCTCAAAAGGAAAACAAGAAAACAGAAACTTCAGCCTCTAAAAAACATGATGAccaagaggaggaggaggaggaggaggaggatgatgaggaggaggaggaggataatGATGCGGATGACAATGATGCAGATGAAGTATCAGGTggaggtgatgatgatgatgatgatgaggatgagttCTCATCAGCTGATGAAGAGGTGCTCAAAAAAGCAGACACTTTAAGAGAAAAGCAGAAGAAAGGAAAGAGGAAAATGGCAGACACCACTGAAGGCTTTTTTGAAGACGCGTCTCAGTATGATGAGAATCTCACCTTCCAGGACATGAATCTGTCCAGACCTTTGCTGAAGgCCATCTCTACTATGGGTTTCAAGCAGCCCACTCCCATCCAGAAAGCCTGTGTTCCGGTGGGTCTTCTGGGTAAAGATATCTGCGCATGTGCTGCGACCGGCACCGgaAAGACAGCGGCCTTTATGTTGCCGGTTTTGGAGCGTCTGATCTATAAGCCGCGGGAGACTCAAGTCACGCGTGTGCTGGTTCTGGTGCCCACCAGAGAGCTGGGTATCCAAGTTCACACAGTGGCCCGTCAGCTGGCCCAGTTCACCACCATCAGCACATGCCTGGCAGTCGGTGGTCTGGATCTGAAGTCTCAGGAAGCAGCTCTAAGAGCAGGACCGGACGTCCTGATCGCCACACCAGGACGGCTGATCGACCATCTGCACAACACGCCATCATTCGAGCTCAGTCAGATCGAGATCCTCATCCTGGACGAGGCTGACAGGATGCTGGACGAGTACTTCGAGGAGCAGATGAAGGAGATCATCCGGATGTGTGCCTATCAGAGACAGACCATGCTGTTCTCAGCCACCATGAGTGAGGAGGTGAAGGATCTGGCATCCGTGTCTCTTAAACAGCCGGTGAGGATCTTCGTGAACAGTAACACAGACGTGGCGCCGTATCTCAGACAAGAGTTTGTGAGGATCAGACCAAATAAAGAAGGAGACCGAGAGGCAATTGTTGCAGCTCTCCTCACCAGAACCTTCCAGGATCACGTGATGCTCTTTACGCAGACTAAGAAACAGGCTCATCGCATGCACATCCTGCTGGGGCTGATGGGACTGAAGGTCGGAGAGCTTCACGGAAACCTGTCGCAAACGCAGAGATTGGAGAGTCTGAGGCGCTTCAAGGATGAGCAGATCGATATTTTAGTGGCCACAGATGTTGCTGCCAGAGGTCTGGATATAGAGGGAGTCAAAACTgTGATAAACTTCACGATGCCCAACACAGTGAAGCATTACGTGCACAGAGTGGGCCGAACGGCTCGTGCAGGGAAAGTGGGCCGCTCTGTGTCTCTGGTGGGAGAAACCGAGAGGAAGATGCTGAAGGAGATTGTTAAAAAAGCCAAATTCCCCGTCAAAGCTCGGGTCATTCCTCAAGagGTGATCCTGAAGTTTCGGGATCTGATTGAGAAGCTGGAGAAGGACGTGTACGCTGTGTTATGCTTGGAGAAGGAGGAGAAGGAAATGGCCCATTCAGAGGCACAGATCAGCTCCGCTCAGAAGAGATTAACAAAGAGCGAAGACGAGAAGCAGCTGCCGAGGACATGGTTTCAGACCAATGAGGAGAGGAAGAAAGATCGCATGGCAAAGGCTCTGCAGGACTTTGATTTGGCTCTGAGAGGGAAGAAAAAGCGTGCGCAGTTCCTGAAGCAGGGCAAGAGGAAAGAGTTAACCGCTGAAGAGAGAGCTCAGTTCGAGGTGCTGAAATCTCAGATGTTTGCTGAACGAGCAGCCAAACGTGAACGCAAGCAAAAGAGAGCCAGAGCCATTCCTGAAGACCAACCCGACAAGAAAGCTTTGAAGAAGAACGCTGGTAAAGCTGGCAAGAAGTCTGTGTTTGACAAGGAGCTCACAAACACCAGCAAGAAAAACCTGAAGCAGTACAGAGCCGGACCTTCCTTCGAGGACCGCAAGAGACTCGGACTTCCCAACAAAAAAGGAGGACGATTCAAGTCAAAGGCCAAgttCAAAAGAAAGTGAAGCATTGACTGATGCAAAGAATAACTTCAGCAGAACatctttttattatattatcCTCCCCACAAAACCAATTtccaaaactttaaataaaactcCACAACCGAA

Function

symbol description
ddx27 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Acts upstream of or within rRNA processing. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; brain; digestive system; musculature system; and retina. Orthologous to human DDX27 (DEAD-box helicase 27).

GO:

id name namespace
GO:0005730 nucleolus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03041 Spliceosome
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-031001-8 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Acts upstream of or within rRNA processing. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; brain; digestive system; musculature system; and retina. Orthologous to human DDX27 (DEAD-box helicase 27).

Ensembl:

ensembl_id ENSDARG00000091831

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064556 True 2626 mRNA 0.49 21 57436314 57476465

Neighbor

gene id symbol gene type direction distance location
XLOC_033252 znfx1 coding downstream 10217 57401178 ~ 57426097 (-)
XLOC_033251 CABZ01034962.1 coding downstream 172669 57263510 ~ 57263645 (-)
XLOC_033250 NA coding downstream 313404 57108325 ~ 57122910 (-)
XLOC_033249 NA coding downstream 328126 56954940 ~ 57108188 (-)
XLOC_033248 cdh22 coding downstream 558948 56638688 ~ 56877366 (-)
XLOC_033254 snrpb coding upstream 1872 57478337 ~ 57485411 (-)
XLOC_033255 itcha coding upstream 15329 57491794 ~ 57539141 (-)
XLOC_033256 NA coding upstream 144440 57620905 ~ 57621869 (-)
XLOC_033257 CU693502.1 coding upstream 153949 57630414 ~ 57631164 (-)
XLOC_033258 cbfa2t2 coding upstream 157895 57634360 ~ 57722862 (-)
XLOC_033247 CR388191.1 non-coding downstream 897189 56539009 ~ 56539125 (-)
XLOC_033246 NA non-coding downstream 1046854 56387454 ~ 56389460 (-)
XLOC_033259 CABZ01087330.2 non-coding upstream 293077 57769542 ~ 57769658 (-)
XLOC_033260 NA non-coding upstream 311255 57787720 ~ 57790025 (-)
XLOC_033262 NA non-coding upstream 605170 58081635 ~ 58082635 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_18013773_18027276 DDX27 coding CI01000340 null 18013531 ~ 18027276 (-)
bowfin (Amia calva) AMCG00008234 ddx27,LOC107553908,LOC107681294,LOC107587605,LOC107744345 coding CM030123.1 CM030123.1 47615853 ~ 47619787 (-)