Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_033254 |
| gene name | snrpb |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 57478337 ~ 57485411 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| snrpb | Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of spliceosomal complex and spliceosomal snRNP complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in cerebrocostomandibular syndrome and mixed connective tissue disease. Orthologous to several human genes including SNRPB (small nuclear ribonucleoprotein polypeptides B and B1). |
| id | name | namespace |
|---|---|---|
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0071013 | catalytic step 2 spliceosome | cellular_component |
| GO:0046540 | U4/U6 x U5 tri-snRNP complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005682 | U5 snRNP | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| GO:0005686 | U2 snRNP | cellular_component |
| GO:0005687 | U4 snRNP | cellular_component |
| GO:0071004 | U2-type prespliceosome | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| ko05322 | Systemic lupus erythematosus |
| ko03041 | Spliceosome |
| ko03032 | DNA replication proteins |
| id | description |
|---|---|
| ZDB-GENE-040426-1819 | Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of spliceosomal complex and spliceosomal snRNP complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in cerebrocostomandibular syndrome and mixed connective tissue disease. Orthologous to several human genes including SNRPB (small nuclear ribonucleoprotein polypeptides B and B1). |
| ensembl_id | ENSDARG00000011125 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00064557 | True | 963 | mRNA | 0.55 | 7 | 57478337 | 57485411 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_033253 | ddx27 | coding | downstream | 1872 | 57436314 ~ 57476465 (-) |
| XLOC_033252 | znfx1 | coding | downstream | 52240 | 57401178 ~ 57426097 (-) |
| XLOC_033251 | CABZ01034962.1 | coding | downstream | 214692 | 57263510 ~ 57263645 (-) |
| XLOC_033250 | NA | coding | downstream | 355427 | 57108325 ~ 57122910 (-) |
| XLOC_033249 | NA | coding | downstream | 370149 | 56954940 ~ 57108188 (-) |
| XLOC_033255 | itcha | coding | upstream | 6383 | 57491794 ~ 57539141 (-) |
| XLOC_033256 | NA | coding | upstream | 135494 | 57620905 ~ 57621869 (-) |
| XLOC_033257 | CU693502.1 | coding | upstream | 145003 | 57630414 ~ 57631164 (-) |
| XLOC_033258 | cbfa2t2 | coding | upstream | 148949 | 57634360 ~ 57722862 (-) |
| XLOC_033259 | CABZ01087330.2 | coding | upstream | 284131 | 57769542 ~ 57769658 (-) |
| XLOC_033247 | CR388191.1 | non-coding | downstream | 939212 | 56539009 ~ 56539125 (-) |
| XLOC_033246 | NA | non-coding | downstream | 1088877 | 56387454 ~ 56389460 (-) |
| XLOC_033260 | NA | non-coding | upstream | 302309 | 57787720 ~ 57790025 (-) |
| XLOC_033262 | NA | non-coding | upstream | 596224 | 58081635 ~ 58082635 (-) |
