LOC110493718 (LOC106564865)


Basic Information

Item Value
gene id LOC110493718
gene name LOC106564865
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 31594262 ~ 31608502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948369.1
ATGGCACAGGAGAGGGCTGCCATGAATGAGACCATTGACTCCATCGCCTCTGCTGGACCTCCCGCTGGAACCATTCCTGACAGCTGCATCGGCCAGTGGCATCGgccagcactggttccactgcagCTGCAGTATGACGACTCGAGGTCTGACTACGGTGATGGGGATGCCCCCGGGAAGGGCAGATCCCTGATGATCAAAGACTACCGAGTGACGGGGGACCACATCGACCTGCGTGAGTTCTACTTCTCCAACGAGGAGTACTATCGTAAGCTGGAGGAGCTGAAGAGGGCCCATTTCCGCACCATGGCCGAGCTAGAGGGCATGTACCGCAAGAAGCTGGAGCCCAAAGGTGCACCACCCTCGGAAAACGTGCAGGGGGCACAGATCGTACTCGAAGATCAGCCCCATGCCCGTGAGGCGTCTGAGGAAGGCCCACTCGGCTCTGGAGCCAACATGTGGCATGACTTCAAGCTGTCGCCTCGCCAGCGCCACCcgtccacatcctccctccagaGCCTCATTGGGGGCCACAAGAAAGGCATCAAGGGTAAGGACCAAAAGCAAGGGTGCAAAGATGTCAAACACGAGCCTTGGAAACACAGAGTGACCGTCCCCAAGCCATTCCACATGACGCTGCGGGAGAACCAGAAGGGCCAGAAAGGTGTGAAGACACGGTCAGAGATCGAGCTGGAGAACGTGGCCTTGCGGAAGCAGATGGAGGAGCTGACAGAGTGCCAGCACAAATTCCGTGCAAGCTCAGTGCCCGTCCACGTCCGCCTGCCCCCATACGAGGAGCTCCACGAACGCGACGAGGCGCGGTGGGCCATGCACGAGCGGGAGCAGCAGTGTCTGTGCTCCACCCAGCGGCCCTTCAGTTTCCTGGAGCGTGAACGTCTcaagagggagcagagagaggagcagctcCGTAACCTCCAGCAAATCAGCCAGGAGAGAGTCCAACCATTCAGGGCCAAGCCCGTGCCCAAGGCCGTGTATGAGGCGGCTACGGGCGAGCAACTGAAGGAGGAGCAGCTGTACCGTGCCATCAAGATGCAGATGAGGGCCCAGGAGCTGCTCCACAGCGCCTCCATGCCACCCAGCATGCTGGCACGCCACCTTAGCAAAAGGGAGCATGCTAAGGATGGAGCCCGGGGGGACACCGCTGGATCCGAGGATGACAACAGGGCCCCTTACAGGCCTAAGATAAACCCGGTGGTGCCCGACTTCGACGCCAGCTACAGGAGGTTCAAGAAGCAGCTGGAGAGCCGGCGCGATGTGAAGCCTTTGACGACGTGCGAGCCGTTCCAGCTCCGGACGTCACAGATCCCCTCGCACCGCGAACGCATCCTGGCCGAGATCGAGAAGGAGCAGATGAGTCCCCGGGCCAAGCGCTGGCCTTACGTCAGCACAGCTGGGCTCGTCCACTCACACAACTCTAGCCTCTGCTCCTCCCTCTCAGGCAGTCTGGAACAGCTGCCTGCCAAAGTCACCGATGCCAGCAAAAAACGCCAAGAGGCTGTAAGAAAGGTGCTTGAGCAGAGAAAGAaggcagaggaagaagaggagagatggagtgagagacagaagcagagagagaagaagcttGCAAAGGTGGTCTCGAAGTGCGCCCAAGCCAATGATGCCCACGTGCCCCTCTCCCAGACCAACCAGTCCAAGCTCAAGCAGTTCAGAAAGCAGGACTTTCAGCGGAGGAAGGAGTaccaggaggagatgagggaaatccaggagagagtgaaggggaggCCTCTGCTGTTGGAGCAGGTTGCACAGATGAATGCCAAACACGCTGCAGAGAAGCGCTACACAGACACCCTGCGAGGCTGTGGAGTGAGTGAGGACTTTGTCAGTGGCAAGGTGCCCAAGTCCCAGCAGCCAGGTGGCCAAGAATCTGCATGCTGGACCACCTCCTCCAGTGACCCAAAACAAAGTGAAAAGGACGAGACAGATACACCGGCTATTTACAACACGGTCTTCCAGGATGAATACCTAAACGATTATGAAGACAGCTTTGCTGACCAAAAACGGGAAGGAGAGCAGGAGGCTGAGAAAGATGAATTAAAGTCCAAAAAAGAAGATGAGGATGAAGGCCATGACGAAGCAGGGCGGGGGAGGGCGGATATTGGGCGTTATTCAGATGATGGCGATTACTCAGATGCCGATGACCATTACTCAGATGCCAGTGAGCATTACTTGCCCCTGGACGATGAAAAGAATAAAGGGAGTGACATCCTCAAAAGGCCCGAGAGTACCCAGAGCAGCCCAAGCTATAGAAGTGGCCAGCACAGCCGAAACAGTCCGAATTCAGAGAGGGATAGGGAAACACAGCAATAGCGAAAAAGAAAAGTAATGAGGGTGACTAAAAAGTCAAAGGAGTGCATTTTCTGACAGGTAGGCAGGGCTACATTGAGGCGAACGtctacaacactgacacacagtgGTAGAGATGCTTCTATTATAAAAAAGGATAAATGCATGATAGGTTATCTGTATACATACAGTAATAATGGGAAATTTTATGTTTATTACATTATTTTGTTGTGTGAGACAGACCAGAGTCAATTGTAGTACTAGGCTATGGTTATAAAAAGGATCACATTGAACAGTTTAGGGTACTCTTTGTCTTGTGATATCCTACTTTGCAGGAAATACAATAGGTTGACCACTTACATTTGGATGCTTGTGATACATTTTCTTTCGACAATTATTTGTCTAATGTTTTGTGACTAAATATATGTAGCCTAACATTTGCTATATATTTCAGGATCATACTTTTTTTCAATCGTTGCgtatatacatcacatttgggAACATAAAGGTGTTATGTATTTCATGTACATTATGggatatttatatttctgtactaaactcagcaaaaaaataaacttcctatcactgtcaa

Function

NR:

description
protein FAM161A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948369.1 True 2923 mRNA 0.53 7 31594262 31608502

Neighbor

gene id symbol gene type direction distance location
LOC110493717 LOC106564867 coding upstream 9076 31578647 ~ 31585186 (+)
LOC110493716 LOC106564869 coding upstream 28548 31550400 ~ 31565714 (+)
LOC110493714 LOC106564868 coding upstream 74693 31514736 ~ 31519569 (+)
LOC110493719 LOC100380723 coding downstream 2937 31611439 ~ 31624829 (+)
LOC118940675 NA coding downstream 10420 31618922 ~ 31619054 (+)
LOC118940670 NA coding downstream 14228 31622730 ~ 31622866 (+)
LOC118940671 NA coding downstream 15668 31624170 ~ 31624304 (+)
LOC110493162 LOC106564875 coding downstream 17697 31626199 ~ 31692221 (+)
G1438816 NA non-coding upstream 5011 31589012 ~ 31589251 (+)
G1438815 NA non-coding upstream 5324 31588690 ~ 31588938 (+)
G1438791 NA non-coding upstream 60513 31533431 ~ 31533749 (+)
G1438784 NA non-coding upstream 65603 31528400 ~ 31528659 (+)
G1438782 NA non-coding upstream 66000 31527944 ~ 31528262 (+)
G1438852 NA non-coding downstream 1062 31609564 ~ 31609854 (+)
G1438854 NA non-coding downstream 2294 31610796 ~ 31611011 (+)
G1438886 LOC106564863 non-coding downstream 101430 31709932 ~ 31711208 (+)
LOC110493723 LOC106564859 non-coding downstream 148362 31744531 ~ 31758155 (+)
G1437911 LOC106564885 other upstream 660678 30927247 ~ 30933584 (+)
G1437734 NA other upstream 928255 30665171 ~ 30666007 (+)
G1437183 LOC106564893 other upstream 1179328 30410743 ~ 30414934 (+)
LOC110493688 LOC106564992 other upstream 1198612 30390554 ~ 30395746 (+)
G1436967 NA other upstream 1556199 30033900 ~ 30038063 (+)
G1438880 NA other downstream 93992 31702494 ~ 31705164 (+)
G1438941 LOC106564856 other downstream 298020 31906522 ~ 31907498 (+)
LOC110493164 LOC106564854 other downstream 364938 31973440 ~ 31976221 (+)
ero1b LOC106586106 other downstream 765113 32352949 ~ 32378308 (+)
rbm34 LOC106564828 other downstream 991734 32562173 ~ 32662021 (+)

Expression


Co-expression Network