XLOC_033255 (itcha)


Basic Information

Item Value
gene id XLOC_033255
gene name itcha
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 57491794 ~ 57539141 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064558
CACATATCTAGTCTTTCGCTCTTTATATTAGTAAAATACCGCGCAGTGCACACCTTTGTATAAAGAAGCATTGAATAATCCAGATAGACGCGCGCGTCGTCACGTGACGGGGTCGCGCAGATACGTCACTCCGACATGGAGCCTGTGCTGGTGGCGGACCTTTGGTCACCCGGTTGAGATGGAGCAAAGTTTATTAAAACGGCGAAAAGCTGATCTCAGATTCCGTTAAAACTGACATCTAGAAGCATTCCCTGTGATCATAACACGATTTGAGCTGCAAATGCTGTTAATGGCCACAAGATGAAGGCTCAACTTCAGATAACAGTTCTGTCTGCTAAGCTGCGGGAGAATAAGAAGAACTGGTTTGGGCCCAGTCCTTATGTGGAGGTGTTTGTGGACGGACAGTCGAAGAAGACGGAGAAATGCACCAACACCCACAGTCCCAAATGGAAACAGTCTCTCACTGTGATCGTCACTCCTTTCAGCAAGCTAATTTTCCGGGTTTGGAGCCACCAGACACTAAAAGCGGACATTTTGCTTGGCGTGGCCAGTCTGGAGGTCAGCGAGACCTTAAAAGCCAACAACATGAAGATCTGTGAGGTGGTGCAGACGCTGCAGTTGAGCTCAGACAGAGGGCGCTCGGAGCAGGTTGGAGATCTGTCTTTGTGTCTGGATGGACTTCAGGTGGATGCAGAGACTTTCGCTTCAGAGGAACAAAAGCACAaTGCTGTTGTTAATGGAGAATCCAGACTGAACGGGGATGCCATAAGAagTCGAGACTCTTCTCCATCTAGTGACATCACTGACGATGCGCCTTTGCCCAATGGCCATGCAGTGGGAAGCTCCGCCTCTGCATCTCCATCCACTGGGGCTTTGAGAGCACCGCGTCCCCTTCGACCCCAGAGACCACCGCCTGCTTCACCACATAAACATACTTCCTCCACAGCATCCTCTACTGGCTCGACTCCCACTCACGGCAGCAGCGCTCCCAGTCCAGAGATGTCTCcacgagtgtgtgtgaatggagaaACCGAGAGTCAAGGGTCAAGCTCGGGCTCAGGCTCAAATCAGGCACCCAGAGCCAGTCCAACACCACCCAGAGCTCCAGCCATCACCAACGGCCCTCTTCCTCCAGGCTGGGAGCAGAGAGCGGATCAGAACGGACGCGTTTACTATGTTGATCACATCGAGAAAAGAACCACATGGGAAAGACCTGAACCTCTGCCACCAGGTTGGGAGCGACGTTTAGACCCAATGGGCCGTGTGTATTATGTGGATCATATAAACAGAACCACCACATGGCAGAGACCCACGCTAGAGTCGGTGCGCAACTATGAGGAATGGCAGAACCAGCGCAGTCAACTTCAGGGAGCCATGCAGCGCTTCAACCAGAGGTTCATCTATGGCCTGCAGGAACAGCTCGCGCCGACAGCTAATAAAGAGTTTGACCCTCTGGGACCGCTGCCGTCAGGATGGGAGAAACGTACCGACAGTAATAGGAGGATGTATTTTGTTCACCATCCTACAAGATCCACACAATGGGAAGACCCTCGCACACAAGGGTTGCTAAATGAGAAGCCTTTGCCGGAAGGTTGGGAAATGAGGTTTACAGTGGATGGGATTCCCTATTTTGTGGATCACAACAGAAGAACTACAACATACATAGACCCCCGTACAGGAAAATCCTCGCTTGAGAACGGCCCTCAGATCACATACGTACGAGATTTTAAAGCCAAAGTGCACTATTTCCGCTTCTGGTGTCAGCAATTATCAATGCCTCAACACATCAAAATCCATGTGAGTCGCAAAACGCTGTTTGAGGACTCATTTCAGCAGattATGGGTTGCCATCCACAAGACCTGAGGCGAAGATTGTGGATCATTTTCCCAGGGGAGGAGGGGCTTGACTATGGAGGCGTGGCCAGGGAATGGTTTTTCCTGCTCTCGCATGAGGTCCTGAACCCCATGTACTGTCTGTTTGAATACGCCGGCAAAGATAACTACTGCCTACAGATTAACCCAGCATCCTCCATCAACCCAGACCACCTCAAATACTTCAAGTTCATCGGCCGCTTCATTGCTATGGCTTTGTTTCATGGGAAGTTCATCGACACCGGCTTCTCTTTGCCCTTTTATAAGCGCATCCTGAACAAACCTTTAGCTCTGAAGGACCTGGAGTCCATCGACCCCGAGTTTTACAACTCTCTCATCTGGATCAAGGATAATAATATCGAGGAGTGTGGCTTGGAGATGTTTTTCTCTGTGGATAAGGAGATTCTGGGAGAGGTCACAACTCATGAACTCAAACCTGATGGAGGAAACATTCAGGTGACGGAGGAAAATAAAGAGGAGTATATCAGGTTGGTTGCTGAATGGAGGTTGTCCAGAGGAGTCGAGGAGCAAACTCAGGCCTTCCTCGAGGGCTTTAATGATGTCCTGCCGCAGCAGTACCTGCAATACTTTGACGCCAAAGAACTTGAGGTTATGCTGTGTGGGATGCAGGAGATCGATCTGGGCGACTGGCAGAGGAACTCTATCTACAGACACTACGCTCGCAGCAGCAAACAGATCGTCTGGTTCTGGCAGTTTGTGAAGGAGATGGACAATGAAAAGCGCATGCGTCTGCTGCAGTTTGTGACCGGCACATGCAGACTTCCCGTTGGGGGATTCGCTGATCTTATGGgcAGCAACGGACCGCAAAAGTTTTGCATTGAAAAAGTGGGAAAAGAAAACTGGCTGCCGAGGAGCCACACATGCTTTAACCGTCTAGACCTGCCGCCCTATAAAAGCTATGAACAGTTAAAGGAGAAGCTGCTCTTCGCCATCGAGGAAACAGAAGGTTTCGGTCAGGAGTAAAGCATGAAAACATCAGCTCATAATCACCATCATATCAGAAGCTGCTACCGAGAGATCAGCAGTGTTTTCCTGGACGCTCTCCTCATCTCTCAGCTTTCTGTTTCTCTGATTTTCTCGCCATTCTGATTTTATACTGCCTTAGTTAAAGATCTGCGATGAAACAAACACTTCAGCTCGCTCTATGCACAAAACCTGCGTCTCAACATGCAACAAACTCTCTCCTTTCGCTTTTTTTCTTGAGCTTTGAGTTTGCATGTCATTTTTAGACACAGAGAGGTAGGATGCGTTGCACTTTAttagtaaaacacacacacacacacacacacacacacacacacacacacaggcgtaATATGCAACAGGTCAAACTTCAGCTCACAATCCAAAGAAGTTGCTGATGTAATTACTGATTGCATGGTGAAAAATGAagcctgttttacattttacattaaaacttGACATTATAATGCTATAAATgctgagtttttgtcttgtttcttgtttaaatgttgaaaaag
>TCONS_00064559
AGAGACCACCGCCTGCTTCACCACATAAACATACTTCCTCCACAGCATCCTCTACTGGCTCGACTCCCACTCACGGCAGCAGCGCTCCCAGTCCAGAGATGTCTCcacgagtgtgtgtgaatggagaaACCGAGAGTCAAGGGTCAAGCTCGGGCTCAGGCTCAAATCAGGCACCCAGAGCCAGTCCAACACCACCCAGAGCTCCAGCCATCACCAACGGCCCTCTTCCTCCAGGGGTGCACACACAACGGTGCTCCAAGTTGGCGGCTGTCTGCGTGCACCCCAACAGAAACTCACCCCCAGAATTCCAAAATGCACGGCGTTGCGTCAGCGTTGCAACATGCAGAGCggagcttctggtgtgcgacctgcagCTGGGAGCAGAGAGCGGATCAGAACGGACGCGTTTACTATGTTGATCACATCGAGAAAAGAACCACATGGGAAAGACCTGAACCTCTGCCACCAGGTTGGGAGCGACGTTTAGACCCAATGGGCCGTGTGTATTATGTGGATCATATAAACAGAACCACCACATGGCAGAGACCCACGCTAGAGTCGGTGCGCAACTATGAGGAATGGCAG

Function

symbol description
itcha Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of protein catabolic process; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein polyubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Is expressed in posterior lateral line primordium. Orthologous to human ITCH (itchy E3 ubiquitin protein ligase).

GO:

id name namespace
GO:0045732 positive regulation of protein catabolic process biological_process
GO:0035519 protein K29-linked ubiquitination biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120919-4 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of protein catabolic process; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein polyubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Is expressed in posterior lateral line primordium. Orthologous to human ITCH (itchy E3 ubiquitin protein ligase).

Ensembl:

ensembl_id ENSDARG00000074903

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064558 False 3374 mRNA 0.48 24 57491794 57539141
TCONS_00064559 True 585 processed_transcript 0.56 5 57513834 57519523

Neighbor

gene id symbol gene type direction distance location
XLOC_033254 snrpb coding downstream 6383 57478337 ~ 57485411 (-)
XLOC_033253 ddx27 coding downstream 15329 57436314 ~ 57476465 (-)
XLOC_033252 znfx1 coding downstream 65697 57401178 ~ 57426097 (-)
XLOC_033251 CABZ01034962.1 coding downstream 228149 57263510 ~ 57263645 (-)
XLOC_033250 NA coding downstream 368884 57108325 ~ 57122910 (-)
XLOC_033256 NA coding upstream 81764 57620905 ~ 57621869 (-)
XLOC_033257 CU693502.1 coding upstream 91273 57630414 ~ 57631164 (-)
XLOC_033258 cbfa2t2 coding upstream 95219 57634360 ~ 57722862 (-)
XLOC_033259 CABZ01087330.2 coding upstream 230401 57769542 ~ 57769658 (-)
XLOC_033260 NA coding upstream 248579 57787720 ~ 57790025 (-)
XLOC_033249 NA non-coding downstream 383606 56954940 ~ 57108188 (-)
XLOC_033247 CR388191.1 non-coding downstream 952669 56539009 ~ 56539125 (-)
XLOC_033246 NA non-coding downstream 1102334 56387454 ~ 56389460 (-)
XLOC_033262 NA non-coding upstream 542494 58081635 ~ 58082635 (-)

Expression


Co-expression Network