LOC110493164 (LOC106564854)


Basic Information

Item Value
gene id LOC110493164
gene name LOC106564854
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 31973440 ~ 31976221 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110493164
ATGTATGGTACTTTGTTCTCAGTCAGTTCTGTTCAGTGGTCATATCACAGGTGGGATGAGGCCTGGAAATAAGATCATTGTGATGGAGATAGTGAATCCTGAGCCTGGCAGCTTTGACATCAGTCTGGCCTGTGGGTGTGGCACAGTGGATGAGGCTCCTCCCACTGACGTGGTATTGGAGCTCTGTGCCAAGTTCGAGGACCTCCAAGTTCCTACGTAAGGCCTGTGTTTCGGGCACCTGGGGTGACGCTGAGAAGCTCATCCCCTACTTCCCCTTCATCGAGGACCAACCTTTCCGGATCGAGATCCAATGTGAACTACTGCGTTTCCGTGTATTTGTGGATGGACACCAGCTCTTTGATTTTTACCACCGGGTGCAATCCTTACTGGACATTGACACATTAAGGATTAATGGTAGTTTAACCATTACCAAACTCAGATAGAGGGAAGAAGGACTGTGTAGGATGCACCTTACAGAAGTGGTGATGGAACCTTGCCTCCCACAATCCTCACACTTAGCAACAATGTGGACATCGACTTGAAAGCAATGTCTTAGCCTCTTTGAGCCTCAGCTGACAAAATCGATTGCAAAGCAATGTTCTGTCCCTGGATTTTCTATAGGATGTAGCCTACCTATTTCTGTTAGTCGTgatttattttttgtttcatgGTATTGAGTGCTGTTGGTTTGAGATGGTCATGAAATAAAAAAGCTTCCAGGGTAAAAAGAAAACTTTAAAAGATCAGAGATCTTGAGCAATACATTTTTTGGTGTTAATGAAAGCTCTCAGGAGGAATTACATACGCACACATACTGCTCTGAACATGAGGATGAAAATGACATTGAAATAAAGGACATAGTGTGTCctttattttttaacattttgatTATATTGATGAACTAATATTGATTAACTTATAACTACAATATACTACATATTTCAGTATGATATAATATTTAAGTGTAATTGGAAATTAATAATTGAGTGGTTATGAAGTAATTCATAATTCTGTGGGGTATTATGCTTACACGGTGACCTTTCAGTTCTTCAATAATTAAATTACGTTTCTTTTGTATCATGGCATATTAGAATAATTTCATGAACTATGCCAGTAGATTATATTGCAGGGGCACAGGTTATTATTAAAGAGTAGAATGGTGATTTTCTATTCCCTCGCCTTGATGCTTGACAATGTCTGTGTATGTTGAGAAGCTCTTTCA
>TU1647620
CAGAAACTAAGCAAGACGCAAGATAGGACGTCGGCGTTCGCAATAACCGCATGCATACATTTTTGAGCAAATACCAACATCACCGTCGCTGCTCTAGTCTACCTGTCAGGTCACTTCTGCTGTGCATATTACGTTGGTGCGACAGACAGAGCACCTTTCAGCTCAgctgatatttttttttctccatttggtCAAGATGGCGGAACTGCTTTGACATCAGTCTGGCCTGTGGGTGTGGCACAGTGGATGAGGCTCCTCCCACTGACGTGGTATTGGAGCTCTGTGCCAAGTTCGAGGACCTCCAAGTTCCTACGTAAGGCCTGTGTTTCGGGCACCTGGGGTGACGCTGAGAAGCTCATCCCCTACTTCCCCTTCATCGAGGACCAACCTTTCCGGATCGAGATCCAATGTGAACTACTGCGTTTCCGTGTATTTGTGGATGGACACCAGCTCTTTGATTTTTACCACCGGGTGCAATCCTTACTGGACATTGACACATTAAGGATTAATGGTAGTTTAACCATTACCAAACTCAGATAGAGGGAAGAAGGACTGTGTAGGATGCACCTTACAGAAGTGGTGATGGAACCTTGCCTCCCACAATCCTCACACTTAGCAACAATGTGGACATCGACTTGAAAGCAATGTCTTAGCCTCTTTGAGCCTCAGCTGACAAAATCGATTGCAAAGCAATGTTCTGTCCCTGGATTTTCTATAGGATGTAGCCTACCTATTTCTGTTAGTCGTgatttattttttgtttcatgGTATTGAGTGCTGTTGGTTTGAGATGGTCATGAAATAAAAAAGCTTCCAGGGTAAAAAGAAAACTTTAAAAGATCAGAGATCTTGAGCAATACATTTTTTGGTGTTAATGAAAGCTCTCAGGAGGAATTACATACGCACACATACTGCTCTGAACATGAGGATGAAAATGACATTGAAATAAAGGACATAGTGTGTCctttattttttaacattttgatTATATTGATGAACTAATATTGATTAACTTATAACTACAATATACTACATATTTCAGTATGATATAATATTTAAGTGTAATTGGAAATTAATAATTGAGTGGTTATGAAGTAATTCATAATTCTGTGGGGTATTATTCAATAATTAAATTACGTTTCTTTTGTATCATGGCATATTAGAATAATTTCATGAACTATGCCAGTAGATTATATTGCAGGGGCACAGGTTATTATTAAAGAGTAGAATGGTGATTTTCTATTCCCTCGCCTTGATGCTTGACAATGTCTGTGTATGTTGAGAAGCTCTTTCAGTGGC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110493164 False 1222 mRNA 0.40 3 31974237 31976216
TU1647620 True 1299 TUCP 0.40 4 31973440 31976221

Neighbor

gene id symbol gene type direction distance location
LOC110493726 ugpa coding upstream 82141 31873655 ~ 31892096 (+)
cmdg LOC106585868 coding upstream 102472 31860343 ~ 31871765 (+)
LOC110493725 LOC106564858 coding upstream 137782 31792455 ~ 31836455 (+)
LOC110493724 LOC106564991 coding upstream 205077 31758530 ~ 31769160 (+)
LOC110493723 LOC106564859 coding upstream 216928 31744531 ~ 31758155 (+)
LOC110493728 LOC106585894 coding downstream 379 31976595 ~ 31990436 (+)
LOC110493731 LOC106585927 coding downstream 42208 32018424 ~ 32042767 (+)
LOC110493733 LOC106564847 coding downstream 132430 32108646 ~ 32146142 (+)
etaa1 LOC106564845 coding downstream 194089 32170305 ~ 32174711 (+)
aplf aplf coding downstream 276209 32252425 ~ 32268211 (+)
G1438997 NA non-coding upstream 62997 31910996 ~ 31911240 (+)
G1438996 NA non-coding upstream 63446 31910399 ~ 31910791 (+)
G1438994 NA non-coding upstream 64895 31908839 ~ 31909342 (+)
G1438993 LOC106585841 non-coding upstream 65940 31908067 ~ 31908297 (+)
G1438943 NA non-coding upstream 68120 31905297 ~ 31906117 (+)
G1439250 NA non-coding downstream 15538 31991754 ~ 32037811 (+)
G1439282 NA non-coding downstream 74252 32050468 ~ 32050696 (+)
G1439284 NA non-coding downstream 76269 32052485 ~ 32052688 (+)
G1439285 NA non-coding downstream 76627 32052843 ~ 32053099 (+)
G1439286 NA non-coding downstream 77580 32053796 ~ 32054034 (+)
G1438941 LOC106564856 other upstream 66739 31906522 ~ 31907498 (+)
G1438880 NA other upstream 269073 31702494 ~ 31705164 (+)
G1437911 LOC106564885 other upstream 1040653 30927247 ~ 30933584 (+)
G1437734 NA other upstream 1308230 30665171 ~ 30666007 (+)
G1437183 LOC106564893 other upstream 1559303 30410743 ~ 30414934 (+)
ero1b LOC106586106 other downstream 397399 32352949 ~ 32378308 (+)
rbm34 LOC106564828 other downstream 624020 32562173 ~ 32662021 (+)
G1439962 LOC106564826 other downstream 736644 32712860 ~ 32766707 (+)
G1440066 NA other downstream 820882 32797098 ~ 32797432 (+)
G1440162 NA other downstream 975584 32951800 ~ 32956057 (+)

Expression


Co-expression Network